Cow genome map
| Conread name: | Ss1.1-rece22c_a22.5 |
| Conread position: | 1-343 |
| Cow position: | chr25:34714180-34714522 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 87, 81 |
| Conread position: | 1-351 |
| Cow position: | chr25:33299465-33299815 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 1-351 |
| Cow position: | chr25:36801605-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 1-352 |
| Cow position: | chr25:34769558-34769207 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 341, 346 |
| Conread position: | 1-369 |
| Cow position: | chr25:34447336-34447704 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 149 |
| Conread position: | 1-375 |
| Cow position: | chr25:36800945-36801319 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 337, 326 |
| Conread position: | 1-376 |
| Cow position: | chr25:33299045-33299420 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 55 |
| Conread position: | 1-376 |
| Cow position: | chr25:33299213-33299588 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 251 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 1-378 |
| Cow position: | chr25:33305257-33304884 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 213, 154 |
| Conread position: | 1-378 |
| Cow position: | chr25:34433502-34433876 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 1-378 |
| Cow position: | chr25:34769726-34769349 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 1-378 |
| Cow position: | chr25:34770062-34769685 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-378 |
| Cow position: | chr25:34770146-34769769 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 1-378 |
| Cow position: | chr25:36800861-36801238 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 318, 323 |
| Conread position: | 1-378 |
| Cow position: | chr25:36801521-36801898 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 79, 86 |
| Conread position: | 1-384 |
| Cow position: | chr25:22235891-22236274 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 65 |
| Conread position: | 1-384 |
| Cow position: | chr25:23420445-23420828 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 1-384 |
| Cow position: | chr25:33144911-33145291 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 108, 88 |
| Conread position: | 1-384 |
| Cow position: | chr25:33299381-33299764 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 56 |
| Conread position: | 1-384 |
| Cow position: | chr25:33305340-33304961 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 98, 22 |
| Conread position: | 1-384 |
| Cow position: | chr25:34447252-34447635 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 242 |
| Conread position: | 1-384 |
| Cow position: | chr25:34713928-34714311 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 67 |
| Conread position: | 1-384 |
| Cow position: | chr25:34714096-34714479 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 1-384 |
| Cow position: | chr25:34769642-34769259 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 97 |
| Conread position: | 1-384 |
| Cow position: | chr25:34769894-34769511 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr25:36800693-36801076 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 2-277 |
| Cow position: | chr25:33127949-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-351 |
| Cow position: | chr25:23420530-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-354 |
| Cow position: | chr25:33127865-33128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-354 |
| Cow position: | chr25:34433587-34433935 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-356 |
| Cow position: | chr25:33145077-33145431 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 95, 87 |
| Conread position: | 2-375 |
| Cow position: | chr25:34447001-34447374 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 149 |
| Conread position: | 2-377 |
| Cow position: | chr25:33157242-33156867 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 2-378 |
| Cow position: | chr25:33157158-33156783 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 169 |
| Conread position: | 2-378 |
| Cow position: | chr25:33157410-33157034 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 2-378 |
| Cow position: | chr25:33298878-33299254 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 2-378 |
| Cow position: | chr25:34447085-34447461 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 2-384 |
| Cow position: | chr25:33127781-33128163 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 2-384 |
| Cow position: | chr25:33157326-33156944 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 2-384 |
| Cow position: | chr25:33157494-33157112 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-384 |
| Cow position: | chr25:33298962-33299344 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 2-384 |
| Cow position: | chr25:33299130-33299512 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 252 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 2-384 |
| Cow position: | chr25:33305421-33305045 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 378, 17 |
| Conread position: | 2-384 |
| Cow position: | chr25:33305819-33305440 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 2-384 |
| Cow position: | chr25:33306156-33305773 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 81 |
| Conread position: | 2-384 |
| Cow position: | chr25:34769809-34769427 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-384 |
| Cow position: | chr25:34769977-34769595 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-227 |
| Cow position: | chr25:34433003-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 17-277 |
| Cow position: | chr25:33145176-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 139, 135 |
| Conread position: | 17-384 |
| Cow position: | chr25:23420377-23420744 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-384 |
| Cow position: | chr25:34732614-34732247 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-384 |
| Cow position: | chr25:36801453-36801820 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 20-378 |
| Cow position: | chr25:33144846-33145201 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 23-369 |
| Cow position: | chr25:346448-346794 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 172, 158 |
| Conread position: | 26-365 |
| Cow position: | chr25:326926-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 26-376 |
| Cow position: | chr25:33298566-33298916 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 29-377 |
| Cow position: | chr25:33145023-33145368 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 120, 16 |
| Conread position: | 74-352 |
| Cow position: | chr25:326548-326826 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 82 |
| Conread position: | 77-376 |
| Cow position: | chr25:18642201-18641899 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 132, 253 |
| Conread position: | 77-377 |
| Cow position: | chr25:23420353-23420653 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 239 |
| Conread position: | 77-384 |
| Cow position: | chr25:34446992-34447299 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-384 |
| Cow position: | chr25:36800693-36800992 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-377 |
| Cow position: | chr25:33127791-33128072 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 97-384 |
| Cow position: | chr25:33298469-33298756 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 98-384 |
| Cow position: | chr25:34763153-34763439 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 100-378 |
| Cow position: | chr25:34446931-34447209 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-384 |
| Cow position: | chr25:34770127-34769847 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 106-317 |
| Cow position: | chr25:34433019-34433231 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 107-384 |
| Cow position: | chr25:366725-367002 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 225, 231 |
| Conread position: | 108-376 |
| Cow position: | chr25:326924-327192 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 147, 135 |
| Conread position: | 109-377 |
| Cow position: | chr25:33298565-33298833 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 127, 135 |
| Conread position: | 109-378 |
| Cow position: | chr25:36800633-36800902 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 114-378 |
| Cow position: | chr25:33127725-33127989 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-381 |
| Cow position: | chr25:34432952-34433211 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 255, 0 |
| Conread position: | 128-384 |
| Cow position: | chr25:23420320-23420576 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 169-384 |
| Cow position: | chr25:34770146-34769931 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 14 |
Show alignments to all cow chromosomes.