Cow genome map
| Conread name: | Ss1.1-rece22c_a22.5 |
| Conread position: | 1-267 |
| Cow position: | chr28:7758066-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 88 |
| Conread position: | 1-280 |
| Cow position: | chr28:7758554-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 1-307 |
| Cow position: | chr28:34673501-34673807 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 176, 172 |
| Conread position: | 1-339 |
| Cow position: | chr28:33210290-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 1-362 |
| Cow position: | chr28:9253249-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 1-365 |
| Cow position: | chr28:9299202-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 61, 15 |
| Conread position: | 1-371 |
| Cow position: | chr28:7757730-7758100 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 1-374 |
| Cow position: | chr28:7810410-7810774 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 1-376 |
| Cow position: | chr28:7757478-7757853 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 1-376 |
| Cow position: | chr28:9299045-9299406 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 1-378 |
| Cow position: | chr28:7810569-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 248 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 1-381 |
| Cow position: | chr28:9290066-9290442 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 1-384 |
| Cow position: | chr28:7757646-7758029 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 1-384 |
| Cow position: | chr28:7757814-7758197 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 1-384 |
| Cow position: | chr28:7757898-7758281 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 1-384 |
| Cow position: | chr28:7810326-7810700 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 53, 68 |
| Conread position: | 1-384 |
| Cow position: | chr28:9252997-9253380 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 1-384 |
| Cow position: | chr28:9290314-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-384 |
| Cow position: | chr28:34673417-34673800 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 1-384 |
| Cow position: | chr28:34679498-34679123 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 77, 64 |
| Conread position: | 2-336 |
| Cow position: | chr28:34696227-34696560 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 97, 79 |
| Conread position: | 2-351 |
| Cow position: | chr28:7757983-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 2-364 |
| Cow position: | chr28:7758471-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 97, 89 |
| Conread position: | 2-375 |
| Cow position: | chr28:7758387-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 68, 61 |
| Conread position: | 2-376 |
| Cow position: | chr28:34695891-34696265 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 70 |
| Conread position: | 2-378 |
| Cow position: | chr28:9253082-9253458 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 2-378 |
| Cow position: | chr28:9253166-9253542 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 57 |
| Conread position: | 2-384 |
| Cow position: | chr28:11333906-11333524 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 3-378 |
| Cow position: | chr28:11334073-11333698 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 4-384 |
| Cow position: | chr28:7757397-7757777 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 4-384 |
| Cow position: | chr28:9289982-9290361 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 141 |
| Conread position: | 6-376 |
| Cow position: | chr28:11334154-11333784 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-376 |
| Cow position: | chr28:9298556-9298918 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 69, 109 |
| Conread position: | 22-384 |
| Cow position: | chr28:33210227-33210590 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 335, 0 |
| Conread position: | 30-384 |
| Cow position: | chr28:34673362-34673716 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 112, 133 |
| Conread position: | 39-383 |
| Cow position: | chr28:34679544-34679197 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 45-384 |
| Cow position: | chr28:7810529-7810868 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 77-378 |
| Cow position: | chr28:34679588-34679286 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 80-376 |
| Cow position: | chr28:9298874-9299168 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 84-384 |
| Cow position: | chr28:7810325-7810616 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 261, 204 |
| Conread position: | 84-384 |
| Cow position: | chr28:9252911-9253212 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 98-378 |
| Cow position: | chr28:7758399-7758679 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-378 |
| Cow position: | chr28:9299217-9299492 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 107-384 |
| Cow position: | chr28:7758324-7758601 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-384 |
| Cow position: | chr28:7757334-7757609 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-376 |
| Cow position: | chr28:11334212-11333952 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 128-379 |
| Cow position: | chr28:7810285-7810536 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.