Cow genome map
| Conread name: | Ss1.1-rece22c_a22.5 |
| Conread position: | 1-250 |
| Cow position: | chr3:68027490-68027739 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 137, 146 |
| Conread position: | 1-280 |
| Cow position: | chr3:62721843-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-292 |
| Cow position: | chr3:77350850-77350564 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 237, 148 |
| Conread position: | 1-339 |
| Cow position: | chr3:68027406-68027744 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-342 |
| Cow position: | chr3:68045999-68046340 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-376 |
| Cow position: | chr3:62742755-62743114 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 1-377 |
| Cow position: | chr3:62722095-62721719 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 1-378 |
| Cow position: | chr3:62722011-62721634 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 1-378 |
| Cow position: | chr3:62722179-62721802 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-378 |
| Cow position: | chr3:62742257-62742633 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-384 |
| Cow position: | chr3:62742424-62742802 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 1-384 |
| Cow position: | chr3:68027154-68027537 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 78 |
| Conread position: | 1-384 |
| Cow position: | chr3:68027238-68027621 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 1-384 |
| Cow position: | chr3:68045747-68046130 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 97 |
| Conread position: | 2-346 |
| Cow position: | chr3:77350933-77350592 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 72 |
| Conread position: | 2-355 |
| Cow position: | chr3:62721926-62721573 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 91 |
| Conread position: | 2-378 |
| Cow position: | chr3:68045832-68046208 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 73 |
| Conread position: | 2-384 |
| Cow position: | chr3:68027323-68027705 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 150 |
| Conread position: | 2-384 |
| Cow position: | chr3:68045580-68045962 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 2-384 |
| Cow position: | chr3:68045916-68046298 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 169 |
| Conread position: | 7-377 |
| Cow position: | chr3:68027076-68027446 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-377 |
| Cow position: | chr3:68045669-68046039 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 238 |
| Conread position: | 7-384 |
| Cow position: | chr3:62722257-62721880 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 93 |
| Conread position: | 38-384 |
| Cow position: | chr3:62722310-62721964 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 45-384 |
| Cow position: | chr3:62743035-62743369 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 72-378 |
| Cow position: | chr3:68027057-68027363 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-384 |
| Cow position: | chr3:62742665-62742971 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 90 |
| Conread position: | 80-378 |
| Cow position: | chr3:77350942-77350644 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 240 |
| Conread position: | 84-384 |
| Cow position: | chr3:62742256-62742555 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 109-376 |
| Cow position: | chr3:68027010-68027277 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 109-384 |
| Cow position: | chr3:62722323-62722048 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-375 |
| Cow position: | chr3:62722387-62722141 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-384 |
| Cow position: | chr3:68027076-68027201 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.