Cow genome map
| Conread name: | Ss1.1-rece22c_a22.5 |
| Conread position: | 1-272 |
| Cow position: | chr8:46817115-46817386 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 155, 146 |
| Conread position: | 1-301 |
| Cow position: | chr8:48406560-48406260 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 235, 244 |
| Conread position: | 1-370 |
| Cow position: | chr8:48407148-48406779 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-375 |
| Cow position: | chr8:46816359-46816733 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-375 |
| Cow position: | chr8:46816779-46817153 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 182 |
| Conread position: | 1-376 |
| Cow position: | chr8:45201248-45201623 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 1-376 |
| Cow position: | chr8:45201500-45201875 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 90 |
| Conread position: | 1-376 |
| Cow position: | chr8:46816443-46816818 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-376 |
| Cow position: | chr8:46816527-46816902 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-376 |
| Cow position: | chr8:48407484-48407109 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 65 |
| Conread position: | 1-377 |
| Cow position: | chr8:46816947-46817323 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 314 |
| Conread position: | 1-378 |
| Cow position: | chr8:45201584-45201961 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 1-378 |
| Cow position: | chr8:45201668-45202038 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 1-378 |
| Cow position: | chr8:48407316-48406939 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 1-378 |
| Cow position: | chr8:55580968-55581345 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 151 |
| Conread position: | 1-378 |
| Cow position: | chr8:55581220-55581597 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-378 |
| Cow position: | chr8:55581304-55581681 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 1-384 |
| Cow position: | chr8:6958018-6957636 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 234, 0 |
| Conread position: | 1-384 |
| Cow position: | chr8:45201080-45201463 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 1-384 |
| Cow position: | chr8:45201164-45201547 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr8:45201416-45201799 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr8:46816191-46816574 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr8:46816695-46817078 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 151 |
| Conread position: | 1-384 |
| Cow position: | chr8:46816863-46817246 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 153 |
| Conread position: | 1-384 |
| Cow position: | chr8:48406728-48406345 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr8:48407064-48406681 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 248 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 295, 320 |
| Conread position: | 1-384 |
| Cow position: | chr8:48407232-48406849 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 150 |
| Conread position: | 1-384 |
| Cow position: | chr8:48407400-48407017 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr8:48407568-48407185 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 1-384 |
| Cow position: | chr8:55581052-55581435 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 151 |
| Conread position: | 2-361 |
| Cow position: | chr8:46817032-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-370 |
| Cow position: | chr8:48406895-48406527 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 134, 156 |
| Conread position: | 2-373 |
| Cow position: | chr8:55581389-55581760 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 336, 314 |
| Conread position: | 2-375 |
| Cow position: | chr8:46816108-46816481 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-376 |
| Cow position: | chr8:55580885-55581259 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 2-384 |
| Cow position: | chr8:45200829-45201211 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 45, 41 |
| Conread position: | 2-384 |
| Cow position: | chr8:46816276-46816658 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-384 |
| Cow position: | chr8:46816612-46816994 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 348 |
| Conread position: | 2-384 |
| Cow position: | chr8:55581137-55581519 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-384 |
| Cow position: | chr8:45200999-45201379 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 95 |
| Conread position: | 5-368 |
| Cow position: | chr8:46815940-46816306 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 6-378 |
| Cow position: | chr8:55580805-55581177 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 150, 146 |
| Conread position: | 12-384 |
| Cow position: | chr8:46815785-46816154 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 178, 51 |
| Conread position: | 15-384 |
| Cow position: | chr8:46816037-46816406 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-377 |
| Cow position: | chr8:48407628-48407276 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 45-377 |
| Cow position: | chr8:6958058-6957727 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 269, 284 |
| Conread position: | 107-384 |
| Cow position: | chr8:48407630-48407353 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 110-378 |
| Cow position: | chr8:46815964-46816232 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 127-383 |
| Cow position: | chr8:6958060-6957804 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-384 |
| Cow position: | chr8:45200787-45201043 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 149, 141 |
| Conread position: | 167-378 |
| Cow position: | chr8:48407654-48407443 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 82 |
| Conread position: | 211-384 |
| Cow position: | chr8:6958060-6957887 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.