Cow genome map
| Conread name: | Ss1.1-reep02c_e6.5.5 |
| Conread position: | 3-368 |
| Cow position: | chr23:440956-441324 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 330 |
| Conread position: | 139-574 |
| Cow position: | chr23:454280-454724 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 13 |
| Conread position: | 221-515 |
| Cow position: | chr23:384581-384881 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 41, 110 |
| Conread position: | 231-574 |
| Cow position: | chr23:371056-371384 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 245-574 |
| Cow position: | chr23:339607-339936 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 263-574 |
| Cow position: | chr23:441198-441509 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-574 |
| Cow position: | chr23:318251-318531 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 304-574 |
| Cow position: | chr23:327454-327727 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 340-587 |
| Cow position: | chr23:472577-472825 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 173 |
| Conread position: | 370-589 |
| Cow position: | chr23:432100-432314 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 371-581 |
| Cow position: | chr23:547937-548145 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 147 |
| Conread position: | 371-581 |
| Cow position: | chr23:581586-581794 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 147 |
| Conread position: | 371-581 |
| Cow position: | chr23:597753-597961 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 147 |
| Conread position: | 371-581 |
| Cow position: | chr23:621084-621292 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 147 |
| Conread position: | 371-587 |
| Cow position: | chr23:484705-484918 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 573-660 |
| Cow position: | chr23:442304-442391 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 647-843 |
| Cow position: | chr23:493745-493940 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 191, 184 |
| Conread position: | 655-815 |
| Cow position: | chr23:340593-340753 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 141 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 655-818 |
| Cow position: | chr23:321057-321220 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 139 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 655-818 |
| Cow position: | chr23:373207-373370 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 139 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 655-818 |
| Cow position: | chr23:474034-474197 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 655-818 |
| Cow position: | chr23:485984-486147 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 655-818 |
| Cow position: | chr23:548748-548911 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 655-818 |
| Cow position: | chr23:582486-582649 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 655-818 |
| Cow position: | chr23:623411-623574 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 655-821 |
| Cow position: | chr23:442469-442635 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 655-823 |
| Cow position: | chr23:329461-329629 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 140 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 658-815 |
| Cow position: | chr23:434283-434440 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 136 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 658-815 |
| Cow position: | chr23:601053-601210 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 658-818 |
| Cow position: | chr23:456232-456393 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 663-820 |
| Cow position: | chr23:535866-536023 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 808-976 |
| Cow position: | chr23:373510-373678 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 813-976 |
| Cow position: | chr23:340853-341016 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 813-976 |
| Cow position: | chr23:434743-434906 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 813-976 |
| Cow position: | chr23:443110-443273 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 813-976 |
| Cow position: | chr23:456576-456739 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 813-983 |
| Cow position: | chr23:330425-330595 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 813-1000 |
| Cow position: | chr23:322355-322542 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 835-976 |
| Cow position: | chr23:486431-486572 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 966-1109 |
| Cow position: | chr23:373752-373894 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 975-1102 |
| Cow position: | chr23:435016-435143 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 975-1102 |
| Cow position: | chr23:443357-443484 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 121 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 975-1102 |
| Cow position: | chr23:549939-550066 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 975-1102 |
| Cow position: | chr23:561987-562114 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 975-1114 |
| Cow position: | chr23:323094-323233 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 975-1127 |
| Cow position: | chr23:331206-331358 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 983-1102 |
| Cow position: | chr23:456835-456954 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1102-1311 |
| Cow position: | chr23:388448-388657 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1102-1321 |
| Cow position: | chr23:323468-323687 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1102-1321 |
| Cow position: | chr23:331428-331647 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1102-1321 |
| Cow position: | chr23:341546-341765 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 1102-1321 |
| Cow position: | chr23:373985-374204 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1102-1322 |
| Cow position: | chr23:457048-457268 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1102-1324 |
| Cow position: | chr23:443655-443877 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1102-1369 |
| Cow position: | chr23:435274-435539 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 116, 112 |
| Conread position: | 1112-1318 |
| Cow position: | chr23:497175-497381 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1112-1318 |
| Cow position: | chr23:537390-537596 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1112-1318 |
| Cow position: | chr23:562295-562501 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1112-1318 |
| Cow position: | chr23:602638-602844 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1112-1318 |
| Cow position: | chr23:625278-625484 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1112-1322 |
| Cow position: | chr23:584700-584910 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1113-1318 |
| Cow position: | chr23:487414-487619 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1124-1330 |
| Cow position: | chr23:475317-475526 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 1348-1722 |
| Cow position: | chr23:445364-445745 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 259 |
Show alignments to all cow chromosomes.