Cow genome map


           Conread name:
           Ss1.1-reje28b_k1.5
        

               Conread position:
               2-241
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               181, 174
               

               Conread position:
               7-246
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-433
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               274
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               84, 75
               

               Conread position:
               7-453
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 173
               

               Conread position:
               7-462
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               273
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               285, 301
               

               Conread position:
               7-537
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               326
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               431, 411
               

               Conread position:
               7-540
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               524, 0
               

               Conread position:
               7-545
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               405, 418
               

               Conread position:
               7-561
               

               Cow position:
               
               

               Alignm length:
               559
               

               Alignm identity:
               335
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               181, 169
               

               Conread position:
               7-562
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 169
               

               Conread position:
               7-562
               

               Cow position:
               
               

               Alignm length:
               559
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 19
               

               Conread position:
               8-290
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               255, 247
               

               Conread position:
               8-378
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               241
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               203, 0
               

               Conread position:
               8-493
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 172
               

               Conread position:
               8-548
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               338
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               180, 169
               

               Conread position:
               8-561
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-561
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               535, 543
               

               Conread position:
               9-332
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               240, 252
               

               Conread position:
               9-350
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               216
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               283, 290
               

               Conread position:
               9-487
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               299
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               282, 341
               

               Conread position:
               9-492
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               157, 177
               

               Conread position:
               9-551
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               337
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               101, 54
               

               Conread position:
               9-561
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 169
               

               Conread position:
               9-561
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               538, 545
               

               Conread position:
               9-561
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               282, 290
               

               Conread position:
               9-578
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 86
               

               Conread position:
               10-539
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               325
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               119, 112
               

               Conread position:
               10-541
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 74
               

               Conread position:
               10-542
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 289
               

               Conread position:
               11-383
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               279, 285
               

               Conread position:
               11-409
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               78, 73
               

               Conread position:
               11-492
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               290
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-492
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 163
               

               Conread position:
               11-500
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               302
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               280, 292
               

               Conread position:
               11-540
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 288
               

               Conread position:
               11-542
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               323
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               167, 154
               

               Conread position:
               11-554
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 288
               

               Conread position:
               11-561
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               347
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               155, 31
               

               Conread position:
               11-561
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 93
               

               Conread position:
               11-562
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 165
               

               Conread position:
               11-563
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               322
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               325, 331
               

               Conread position:
               12-542
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               329
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               62, 72
               

               Conread position:
               13-454
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-555
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               334
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               8, 124
               

               Conread position:
               16-459
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               265
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               277, 290
               

               Conread position:
               17-540
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 292
               

               Conread position:
               17-542
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 282
               

               Conread position:
               17-542
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 289
               

               Conread position:
               17-545
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 57
               

               Conread position:
               18-492
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               283
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               241, 251
               

               Conread position:
               18-538
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               306
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               168, 159
               

               Conread position:
               18-542
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               339, 328
               

               Conread position:
               18-562
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 157
               

               Conread position:
               19-462
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               240, 250
               

               Conread position:
               19-554
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 280
               

               Conread position:
               19-561
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 280
               

               Conread position:
               20-342
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 72
               

               Conread position:
               20-378
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 72
               

               Conread position:
               20-453
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               267
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               167, 156
               

               Conread position:
               20-489
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               290
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               239, 249
               

               Conread position:
               20-492
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               72, 81
               

               Conread position:
               20-501
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               294
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               229, 245
               

               Conread position:
               20-503
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 84
               

               Conread position:
               20-542
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               313
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               138, 148
               

               Conread position:
               25-493
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               155, 53
               

               Conread position:
               26-417
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               95, 119
               

               Conread position:
               26-492
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               162, 140
               

               Conread position:
               26-542
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 273
               

               Conread position:
               26-543
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               310
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               154, 150
               

               Conread position:
               26-545
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               313
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               265, 273
               

               Conread position:
               26-545
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               318
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               233, 243
               

               Conread position:
               26-545
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               154, 150
               

               Conread position:
               26-549
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 52
               

               Conread position:
               26-549
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               321
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               18, 35
               

               Conread position:
               26-561
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               384, 394
               

               Conread position:
               26-561
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               323
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               164, 150
               

               Conread position:
               26-561
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               320
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               34, 124
               

               Conread position:
               27-492
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               291
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               266, 282
               

               Conread position:
               27-548
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               310
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               319, 315
               

               Conread position:
               27-551
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               316
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               63, 75
               

               Conread position:
               28-492
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               278
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               5, 272
               

               Conread position:
               28-545
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               310
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               231, 241
               

               Conread position:
               28-561
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               332
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               265, 278
               

               Conread position:
               29-497
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               230, 240
               

               Conread position:
               31-542
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               260, 267
               

               Conread position:
               32-384
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               216
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               257, 267
               

               Conread position:
               32-492
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               95, 118
               

               Conread position:
               32-516
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               298
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               157, 144
               

               Conread position:
               32-545
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               317
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               259, 267
               

               Conread position:
               32-545
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               317
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               257, 267
               

               Conread position:
               32-545
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               297
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               310, 305
               

               Conread position:
               32-561
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               321
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               148, 144
               

               Conread position:
               32-561
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               325
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               228, 241
               

               Conread position:
               32-562
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               329
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               149, 144
               

               Conread position:
               36-467
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               273
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               254, 260
               

               Conread position:
               41-492
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               279
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               143, 135
               

               Conread position:
               41-530
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 222
               

               Conread position:
               42-540
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               217, 231
               

               Conread position:
               50-561
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               314
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               43, 36
               

               Conread position:
               90-562
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 169
               

               Conread position:
               95-561
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 204
               

               Conread position:
               104-540
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 73
               

               Conread position:
               107-527
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               250
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               184, 201
               

               Conread position:
               128-537
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               252
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               31, 52
               

               Conread position:
               129-562
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               268
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               59, 47
               

               Conread position:
               193-545
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               56, 74
               

               Conread position:
               272-538
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               20, 9
               

               Conread position:
               290-562
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               123, 9
               
Show alignments to all cow chromosomes.