Cow genome map
| Conread name: | Ss1.1-reje28b_k1.5 |
| Conread position: | 2-545 |
| Cow position: | chr17:22552890-22552346 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 336 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 8, 250 |
| Conread position: | 2-548 |
| Cow position: | chr17:22552722-22552175 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 299 |
| Conread position: | 2-562 |
| Cow position: | chr17:22552301-22551741 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 174 |
| Conread position: | 2-568 |
| Cow position: | chr17:22552050-22551483 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 305 |
| Conread position: | 3-495 |
| Cow position: | chr17:22589719-22589226 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 318 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 7-547 |
| Cow position: | chr17:22473385-22473926 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 147 |
| Conread position: | 8-560 |
| Cow position: | chr17:22499090-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 8-568 |
| Cow position: | chr17:22473303-22473863 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 243 |
| Conread position: | 9-362 |
| Cow position: | chr17:22451991-22451638 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 157, 171 |
| Conread position: | 9-537 |
| Cow position: | chr17:22452327-22451799 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 167 |
| Conread position: | 10-545 |
| Cow position: | chr17:22552209-22551674 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 249 |
| Conread position: | 11-562 |
| Cow position: | chr17:22552460-22551909 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 18-562 |
| Cow position: | chr17:22590291-22589747 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 241 |
| Conread position: | 19-453 |
| Cow position: | chr17:41440639-41440205 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-489 |
| Cow position: | chr17:22452149-22451679 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 170 |
| Conread position: | 19-545 |
| Cow position: | chr17:22452233-22451707 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 139 |
| Conread position: | 19-548 |
| Cow position: | chr17:22589870-22589341 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 147 |
| Conread position: | 20-330 |
| Cow position: | chr17:22589533-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 143, 151 |
| Conread position: | 20-487 |
| Cow position: | chr17:22551947-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 201 |
| Conread position: | 20-561 |
| Cow position: | chr17:22499162-22498621 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 239 |
| Conread position: | 20-561 |
| Cow position: | chr17:22589953-22589412 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 171 |
| Conread position: | 22-567 |
| Cow position: | chr17:22452397-22451853 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 10 |
| Conread position: | 24-562 |
| Cow position: | chr17:22552531-22551993 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 165 |
| Conread position: | 24-562 |
| Cow position: | chr17:22590117-22589579 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 35 |
| Conread position: | 26-490 |
| Cow position: | chr17:22452058-22451594 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 291 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 265, 277 |
| Conread position: | 26-561 |
| Cow position: | chr17:22499324-22498789 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 392 |
| Conread position: | 26-561 |
| Cow position: | chr17:22553117-22552582 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 333 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 163, 150 |
| Conread position: | 26-562 |
| Cow position: | chr17:22590199-22589663 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 233 |
| Conread position: | 26-567 |
| Cow position: | chr17:22552949-22552408 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 150 |
| Conread position: | 29-493 |
| Cow position: | chr17:22499237-22498773 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 32-554 |
| Cow position: | chr17:22552103-22551580 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 32-562 |
| Cow position: | chr17:22552607-22552077 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 277 |
| Conread position: | 32-562 |
| Cow position: | chr17:22552775-22552245 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 32-590 |
| Cow position: | chr17:22552355-22551795 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 227 |
| Conread position: | 37-561 |
| Cow position: | chr17:22499395-22498873 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 37-562 |
| Cow position: | chr17:22473172-22473689 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 254, 7 |
| Conread position: | 39-562 |
| Cow position: | chr17:22553020-22552497 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 137 |
| Conread position: | 51-501 |
| Cow position: | chr17:22473262-22473712 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 203 |
| Conread position: | 53-562 |
| Cow position: | chr17:22553174-22552665 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 214, 206 |
| Conread position: | 93-562 |
| Cow position: | chr17:22452411-22451942 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 213 |
| Conread position: | 128-565 |
| Cow position: | chr17:22499390-22498953 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 275 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-562 |
| Cow position: | chr17:22590297-22589915 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 254 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 184-539 |
| Cow position: | chr17:22499418-22499063 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 116 |
| Conread position: | 189-562 |
| Cow position: | chr17:22553122-22552749 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 102, 120 |
Show alignments to all cow chromosomes.