Cow genome map

Conread name: Ss1.1-reje28b_k1.5

Conread position: 2-545
Cow position:
Alignm length: 548
Alignm identity: 336
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 8, 250

Conread position: 2-548
Cow position:
Alignm length: 549
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 299

Conread position: 2-562
Cow position:
Alignm length: 566
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 174

Conread position: 2-568
Cow position:
Alignm length: 573
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 305

Conread position: 3-495
Cow position:
Alignm length: 500
Alignm identity: 318
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 7, 81

Conread position: 7-547
Cow position:
Alignm length: 545
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 147

Conread position: 8-560
Cow position:
Alignm length: 559
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 51

Conread position: 8-568
Cow position:
Alignm length: 563
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 243

Conread position: 9-362
Cow position:
Alignm length: 356
Alignm identity: 224
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 157, 171

Conread position: 9-537
Cow position:
Alignm length: 531
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 167

Conread position: 10-545
Cow position:
Alignm length: 540
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 249

Conread position: 11-562
Cow position:
Alignm length: 557
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 48

Conread position: 18-562
Cow position:
Alignm length: 549
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 241

Conread position: 19-453
Cow position:
Alignm length: 435
Alignm identity: 257
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 19-489
Cow position:
Alignm length: 476
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 170

Conread position: 19-545
Cow position:
Alignm length: 530
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 139

Conread position: 19-548
Cow position:
Alignm length: 535
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 147

Conread position: 20-330
Cow position:
Alignm length: 313
Alignm identity: 200
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 143, 151

Conread position: 20-487
Cow position:
Alignm length: 472
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 201

Conread position: 20-561
Cow position:
Alignm length: 544
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 239

Conread position: 20-561
Cow position:
Alignm length: 547
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 171

Conread position: 22-567
Cow position:
Alignm length: 549
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 10

Conread position: 24-562
Cow position:
Alignm length: 542
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 165

Conread position: 24-562
Cow position:
Alignm length: 543
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 35

Conread position: 26-490
Cow position:
Alignm length: 466
Alignm identity: 291
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 265, 277

Conread position: 26-561
Cow position:
Alignm length: 537
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 392

Conread position: 26-561
Cow position:
Alignm length: 540
Alignm identity: 333
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 163, 150

Conread position: 26-562
Cow position:
Alignm length: 540
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 233

Conread position: 26-567
Cow position:
Alignm length: 546
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 150

Conread position: 29-493
Cow position:
Alignm length: 467
Alignm identity: 294
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 42, 49

Conread position: 32-554
Cow position:
Alignm length: 527
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 144

Conread position: 32-562
Cow position:
Alignm length: 533
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 277

Conread position: 32-562
Cow position:
Alignm length: 534
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 144

Conread position: 32-590
Cow position:
Alignm length: 564
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 227

Conread position: 37-561
Cow position:
Alignm length: 525
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 37-562
Cow position:
Alignm length: 527
Alignm identity: 317
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 254, 7

Conread position: 39-562
Cow position:
Alignm length: 528
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 137

Conread position: 51-501
Cow position:
Alignm length: 453
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 203

Conread position: 53-562
Cow position:
Alignm length: 514
Alignm identity: 307
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 214, 206

Conread position: 93-562
Cow position:
Alignm length: 471
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 213

Conread position: 128-565
Cow position:
Alignm length: 438
Alignm identity: 275
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 180-562
Cow position:
Alignm length: 386
Alignm identity: 254
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 84, 79

Conread position: 184-539
Cow position:
Alignm length: 357
Alignm identity: 220
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 108, 116

Conread position: 189-562
Cow position:
Alignm length: 377
Alignm identity: 238
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 102, 120

Show alignments to all cow chromosomes.