Cow genome map

Conread name: Ss1.1-reje28b_k1.5

Conread position: 3-561
Cow position: chr19:23614488-23615047 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 261

Conread position: 6-559
Cow position: chr19:14959350-14958811 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 350
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 52

Conread position: 7-288
Cow position: chr19:23650195-23650476 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 187
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 254, 247

Conread position: 8-349
Cow position: chr19:14948329-14947989 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 216
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 291, 282

Conread position: 8-459
Cow position: chr19:23650028-23650479 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 288

Conread position: 8-551
Cow position: chr19:23614410-23614953 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 168

Conread position: 8-562
Cow position: chr19:14960087-14959549 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 350
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 156, 147

Conread position: 9-251
Cow position: chr19:14940799-14941041 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 158
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 9-296
Cow position: chr19:23614831-23615117 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 174, 159

Conread position: 9-303
Cow position: chr19:43570001-43569708 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 247, 254

Conread position: 9-364
Cow position: chr19:23614747-23615102 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 233
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 150, 163

Conread position: 9-377
Cow position: chr19:23650113-23650481 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 240
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 253, 249

Conread position: 9-380
Cow position: chr19:20678342-20678713 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 237
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 167, 171

Conread position: 9-483
Cow position: chr19:20635494-20635020 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 302
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 192, 188

Conread position: 9-539
Cow position: chr19:23597168-23597698 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 254

Conread position: 9-542
Cow position: chr19:23649609-23650142 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 167

Conread position: 9-548
Cow position: chr19:14939960-14940498 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 29

Conread position: 9-549
Cow position: chr19:23649861-23650402 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 254

Conread position: 9-559
Cow position: chr19:14959834-14959300 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 339
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 124, 22

Conread position: 9-561
Cow position: chr19:20677838-20678390 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 170

Conread position: 9-561
Cow position: chr19:23649777-23650329 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 22

Conread position: 9-563
Cow position: chr19:14959514-14958975 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 349
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 278, 206

Conread position: 10-492
Cow position: chr19:20678259-20678738 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 310
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 80, 72

Conread position: 10-542
Cow position: chr19:23597085-23597617 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 286

Conread position: 10-545
Cow position: chr19:14940296-14940831 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 289

Conread position: 10-561
Cow position: chr19:20635577-20635026 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 290

Conread position: 10-561
Cow position: chr19:20677671-20678222 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 167

Conread position: 10-561
Cow position: chr19:23613656-23614207 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 234

Conread position: 11-212
Cow position: chr19:23614917-23615118 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 135
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 11-374
Cow position: chr19:23597338-23597701 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 230
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 280, 297

Conread position: 11-387
Cow position: chr19:43570083-43569708 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 249
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 83, 76

Conread position: 11-420
Cow position: chr19:14916020-14916425 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 249
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 280, 109

Conread position: 11-516
Cow position: chr19:23614581-23615086 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 319
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 178, 164

Conread position: 11-540
Cow position: chr19:23649947-23650476 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 288

Conread position: 11-545
Cow position: chr19:23596921-23597452 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 319
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 252, 115

Conread position: 11-559
Cow position: chr19:14940549-14941096 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 288

Conread position: 11-561
Cow position: chr19:14940045-14940595 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 165

Conread position: 11-561
Cow position: chr19:14940381-14940931 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 288

Conread position: 11-561
Cow position: chr19:23613489-23614039 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 76

Conread position: 11-565
Cow position: chr19:14940213-14940767 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 165

Conread position: 12-540
Cow position: chr19:43570166-43569642 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 158

Conread position: 12-545
Cow position: chr19:23614076-23614611 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 253

Conread position: 15-561
Cow position: chr19:20677760-20678306 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 74

Conread position: 17-545
Cow position: chr19:43570245-43569719 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 60

Conread position: 17-557
Cow position: chr19:23613411-23613953 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 237

Conread position: 18-562
Cow position: chr19:20677511-20678055 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 331
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 273, 281

Conread position: 19-492
Cow position: chr19:23613581-23614054 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 280

Conread position: 19-542
Cow position: chr19:14940137-14940660 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 244

Conread position: 19-561
Cow position: chr19:20677594-20678138 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 335
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 12, 279

Conread position: 19-561
Cow position: chr19:23614001-23614543 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 484, 491

Conread position: 20-492
Cow position: chr19:23614170-23614642 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 67

Conread position: 20-496
Cow position: chr19:14948484-14948008 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 84

Conread position: 20-545
Cow position: chr19:20635735-20635210 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 325
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 20, 34

Conread position: 20-561
Cow position: chr19:20678017-20678558 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 340
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 163, 179

Conread position: 20-562
Cow position: chr19:14940474-14941016 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 156

Conread position: 20-562
Cow position: chr19:23649284-23649826 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 279

Conread position: 20-562
Cow position: chr19:23649704-23650246 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 289

Conread position: 21-416
Cow position: chr19:14960158-14959765 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 259
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 242, 238

Conread position: 24-460
Cow position: chr19:14959256-14958826 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 286
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 65, 51

Conread position: 24-464
Cow position: chr19:23614678-23615118 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 283
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 165, 144

Conread position: 25-548
Cow position: chr19:43570395-43569882 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 117

Conread position: 26-495
Cow position: chr19:14960235-14959770 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 82

Conread position: 26-501
Cow position: chr19:20635645-20635170 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 293
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 267, 280

Conread position: 26-516
Cow position: chr19:23614344-23614834 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 52

Conread position: 26-540
Cow position: chr19:20677939-20678451 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 266

Conread position: 26-542
Cow position: chr19:23613924-23614440 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 273

Conread position: 26-548
Cow position: chr19:20678191-20678713 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 150

Conread position: 26-549
Cow position: chr19:23649458-23649982 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 151

Conread position: 26-562
Cow position: chr19:14959901-14959381 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 334
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 40, 26

Conread position: 26-591
Cow position: chr19:14960319-14959760 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 170

Conread position: 27-545
Cow position: chr19:23614261-23614779 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 325
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 153, 139

Conread position: 28-497
Cow position: chr19:20678109-20678578 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 293
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 226, 218

Conread position: 28-547
Cow position: chr19:23613758-23614276 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 479

Conread position: 28-553
Cow position: chr19:14960401-14959876 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 248

Conread position: 31-497
Cow position: chr19:14915955-14916418 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 294
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 41, 20

Conread position: 32-545
Cow position: chr19:23613846-23614359 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 264

Conread position: 39-568
Cow position: chr19:14960472-14959947 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 40-561
Cow position: chr19:23649388-23649909 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 137

Conread position: 40-562
Cow position: chr19:23613350-23613872 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 42-562
Cow position: chr19:23596868-23597385 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 136

Conread position: 51-561
Cow position: chr19:43570452-43569953 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 319
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 29, 55

Conread position: 61-462
Cow position: chr19:14959712-14959313 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 255
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 119, 61

Conread position: 70-562
Cow position: chr19:23596813-23597301 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 306
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 269, 13

Conread position: 93-562
Cow position: chr19:14939960-14940428 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 20

Conread position: 101-562
Cow position: chr19:23649281-23649742 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 276
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 189, 198

Conread position: 117-545
Cow position: chr19:23613343-23613771 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 269
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 174, 179

Conread position: 135-537
Cow position: chr19:14948453-14948052 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 258
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 157, 41

Conread position: 224-554
Cow position: chr19:14948448-14948118 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 214
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 35

Show alignments to all cow chromosomes.