Cow genome map


           Conread name:
           Ss1.1-reje28b_k1.5
        

               Conread position:
               3-561
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 261
               

               Conread position:
               6-559
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               350
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               14, 52
               

               Conread position:
               7-288
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               254, 247
               

               Conread position:
               8-349
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               216
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               291, 282
               

               Conread position:
               8-459
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 288
               

               Conread position:
               8-551
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 168
               

               Conread position:
               8-562
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               350
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               156, 147
               

               Conread position:
               9-251
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               9-296
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               174, 159
               

               Conread position:
               9-303
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               247, 254
               

               Conread position:
               9-364
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               150, 163
               

               Conread position:
               9-377
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               253, 249
               

               Conread position:
               9-380
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               167, 171
               

               Conread position:
               9-483
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               302
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               192, 188
               

               Conread position:
               9-539
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 254
               

               Conread position:
               9-542
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 167
               

               Conread position:
               9-548
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 29
               

               Conread position:
               9-549
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 254
               

               Conread position:
               9-559
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               339
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               124, 22
               

               Conread position:
               9-561
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 170
               

               Conread position:
               9-561
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 22
               

               Conread position:
               9-563
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               349
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               278, 206
               

               Conread position:
               10-492
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               310
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               80, 72
               

               Conread position:
               10-542
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 286
               

               Conread position:
               10-545
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 289
               

               Conread position:
               10-561
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               282, 290
               

               Conread position:
               10-561
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 167
               

               Conread position:
               10-561
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               250, 234
               

               Conread position:
               11-212
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-374
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               230
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               280, 297
               

               Conread position:
               11-387
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               83, 76
               

               Conread position:
               11-420
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               280, 109
               

               Conread position:
               11-516
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               319
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               178, 164
               

               Conread position:
               11-540
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 288
               

               Conread position:
               11-545
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               319
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               252, 115
               

               Conread position:
               11-559
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 288
               

               Conread position:
               11-561
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 165
               

               Conread position:
               11-561
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 288
               

               Conread position:
               11-561
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 76
               

               Conread position:
               11-565
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 165
               

               Conread position:
               12-540
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 158
               

               Conread position:
               12-545
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 253
               

               Conread position:
               15-561
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 74
               

               Conread position:
               17-545
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 60
               

               Conread position:
               17-557
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 237
               

               Conread position:
               18-562
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               331
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               273, 281
               

               Conread position:
               19-492
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 280
               

               Conread position:
               19-542
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 244
               

               Conread position:
               19-561
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               335
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               12, 279
               

               Conread position:
               19-561
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               484, 491
               

               Conread position:
               20-492
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 67
               

               Conread position:
               20-496
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 84
               

               Conread position:
               20-545
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               325
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               20, 34
               

               Conread position:
               20-561
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               340
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               163, 179
               

               Conread position:
               20-562
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 156
               

               Conread position:
               20-562
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 279
               

               Conread position:
               20-562
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 289
               

               Conread position:
               21-416
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               259
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               242, 238
               

               Conread position:
               24-460
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               286
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               65, 51
               

               Conread position:
               24-464
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               283
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               165, 144
               

               Conread position:
               25-548
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 117
               

               Conread position:
               26-495
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 82
               

               Conread position:
               26-501
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               293
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               267, 280
               

               Conread position:
               26-516
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 52
               

               Conread position:
               26-540
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 266
               

               Conread position:
               26-542
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               264, 273
               

               Conread position:
               26-548
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 150
               

               Conread position:
               26-549
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 151
               

               Conread position:
               26-562
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               334
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               40, 26
               

               Conread position:
               26-591
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 170
               

               Conread position:
               27-545
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               325
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               153, 139
               

               Conread position:
               28-497
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               293
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               226, 218
               

               Conread position:
               28-547
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               466, 479
               

               Conread position:
               28-553
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 248
               

               Conread position:
               31-497
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               41, 20
               

               Conread position:
               32-545
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 264
               

               Conread position:
               39-568
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               40-561
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 137
               

               Conread position:
               40-562
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 197
               

               Conread position:
               42-562
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 136
               

               Conread position:
               51-561
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               319
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               29, 55
               

               Conread position:
               61-462
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               119, 61
               

               Conread position:
               70-562
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               306
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               269, 13
               

               Conread position:
               93-562
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 20
               

               Conread position:
               101-562
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               276
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               189, 198
               

               Conread position:
               117-545
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               269
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               174, 179
               

               Conread position:
               135-537
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               157, 41
               

               Conread position:
               224-554
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               39, 35
               
Show alignments to all cow chromosomes.