Cow genome map

Conread name: Ss1.1-reje28b_k1.5

Conread position: 2-562
Cow position: chr2:78754474-78755018 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 352
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 92, 73

Conread position: 3-553
Cow position: chr2:5875136-5874584 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 336
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 7, 219

Conread position: 8-562
Cow position: chr2:86465570-86466124 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 328
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 18, 25

Conread position: 9-291
Cow position: chr2:82800167-82800449 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 182
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 179, 169

Conread position: 9-545
Cow position: chr2:82799747-82800283 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 479, 491

Conread position: 9-551
Cow position: chr2:82799495-82800037 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 338

Conread position: 9-561
Cow position: chr2:82799579-82800131 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 66

Conread position: 9-562
Cow position: chr2:82799663-82800216 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 480, 491

Conread position: 10-530
Cow position: chr2:5874876-5874356 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 320
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 179, 175

Conread position: 10-554
Cow position: chr2:5874961-5874415 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 325
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 12, 291

Conread position: 10-563
Cow position: chr2:5875044-5874491 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 329
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 76

Conread position: 11-542
Cow position: chr2:82799917-82800448 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 165

Conread position: 14-540
Cow position: chr2:86465072-86465598 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 312
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 83, 69

Conread position: 17-562
Cow position: chr2:82799839-82800384 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 242

Conread position: 20-492
Cow position: chr2:86465414-86465886 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 289
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 168, 158

Conread position: 20-538
Cow position: chr2:86465666-86466184 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 304
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 20-549
Cow position: chr2:86465246-86465776 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 317
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 159, 140

Conread position: 26-493
Cow position: chr2:78755738-78756206 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 293
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 150, 172

Conread position: 26-497
Cow position: chr2:78755572-78756042 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 283
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 464, 95

Conread position: 26-542
Cow position: chr2:78754986-78755501 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 56

Conread position: 26-553
Cow position: chr2:78754902-78755429 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 223

Conread position: 27-537
Cow position: chr2:78755823-78756332 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 319
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 38, 43

Conread position: 28-521
Cow position: chr2:78755407-78755897 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 306
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 148, 106

Conread position: 28-539
Cow position: chr2:78754166-78754675 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 314
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 25

Conread position: 28-540
Cow position: chr2:78754820-78755332 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 235

Conread position: 32-569
Cow position: chr2:78755495-78756029 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 323
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 144, 19

Conread position: 42-489
Cow position: chr2:5875180-5874733 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 269
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 295, 303

Conread position: 47-552
Cow position: chr2:48689534-48689030 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 304
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 250, 121

Conread position: 51-561
Cow position: chr2:82799453-82799963 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 318
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 212, 200

Conread position: 103-545
Cow position: chr2:78754811-78755253 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 281
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 72, 77

Conread position: 130-491
Cow position: chr2:5875176-5874815 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 227
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 265, 270

Conread position: 209-548
Cow position: chr2:48689540-48689201 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 217
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 51, 43

Show alignments to all cow chromosomes.