Cow genome map
| Conread name: | Ss1.1-reje28b_k1.5 |
| Conread position: | 1-489 |
| Cow position: | chr23:24522690-24522203 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 76 |
| Conread position: | 2-279 |
| Cow position: | chr23:24560341-24560063 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 9, 220 |
| Conread position: | 2-548 |
| Cow position: | chr23:24560677-24560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 86 |
| Conread position: | 2-561 |
| Cow position: | chr23:24522857-24522299 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 358 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 6 |
| Conread position: | 2-561 |
| Cow position: | chr23:24639261-24639821 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 175 |
| Conread position: | 5-422 |
| Cow position: | chr23:25626663-25627083 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 7, 305 |
| Conread position: | 7-567 |
| Cow position: | chr23:24547196-24546634 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 8-201 |
| Cow position: | chr23:25723907-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 8-361 |
| Cow position: | chr23:24522516-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-484 |
| Cow position: | chr23:24626276-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 213 |
| Conread position: | 9-290 |
| Cow position: | chr23:25660456-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 158, 166 |
| Conread position: | 9-335 |
| Cow position: | chr23:24654086-24654414 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 253, 243 |
| Conread position: | 9-364 |
| Cow position: | chr23:25698435-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 86 |
| Conread position: | 9-416 |
| Cow position: | chr23:24522599-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 258 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-493 |
| Cow position: | chr23:25698603-25698119 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-369 |
| Cow position: | chr23:25626585-25626944 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 251, 241 |
| Conread position: | 10-370 |
| Cow position: | chr23:25724073-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-561 |
| Cow position: | chr23:24639522-24640073 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 11-561 |
| Cow position: | chr23:24639355-24639905 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 342 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 11-561 |
| Cow position: | chr23:25626169-25626716 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 343 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 351, 356 |
| Conread position: | 17-530 |
| Cow position: | chr23:24535984-24535471 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 237 |
| Conread position: | 17-542 |
| Cow position: | chr23:25660212-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 282 |
| Conread position: | 17-562 |
| Cow position: | chr23:24639445-24639990 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 19-380 |
| Cow position: | chr23:24626371-24626732 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 157 |
| Conread position: | 23-444 |
| Cow position: | chr23:25724144-25723723 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 26-285 |
| Cow position: | chr23:24535723-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-416 |
| Cow position: | chr23:25698502-25698112 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 98 |
| Conread position: | 26-498 |
| Cow position: | chr23:24547092-24546620 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 283 |
| Conread position: | 26-545 |
| Cow position: | chr23:24547260-24546741 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 150 |
| Conread position: | 26-545 |
| Cow position: | chr23:25626100-25626616 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 320 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 264, 273 |
| Conread position: | 26-561 |
| Cow position: | chr23:24560820-24560285 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 231 |
| Conread position: | 27-542 |
| Cow position: | chr23:24560903-24560388 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 227 |
| Conread position: | 28-542 |
| Cow position: | chr23:25626354-25626865 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 229 |
| Conread position: | 28-561 |
| Cow position: | chr23:24522745-24522215 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 330 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 137, 151 |
| Conread position: | 34-561 |
| Cow position: | chr23:25660145-25660672 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 391 |
| Conread position: | 36-548 |
| Cow position: | chr23:25698660-25698149 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 41-549 |
| Cow position: | chr23:24639217-24639726 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 135 |
| Conread position: | 42-372 |
| Cow position: | chr23:24654037-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 138, 7 |
| Conread position: | 50-561 |
| Cow position: | chr23:24547320-24546809 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 209 |
| Conread position: | 52-562 |
| Cow position: | chr23:25625958-25626468 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 305 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 238, 247 |
| Conread position: | 53-542 |
| Cow position: | chr23:24536032-24535543 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 201 |
| Conread position: | 56-540 |
| Cow position: | chr23:24560706-24560222 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 203 |
| Conread position: | 87-539 |
| Cow position: | chr23:24626271-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 100-548 |
| Cow position: | chr23:25698680-25698232 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 134-456 |
| Cow position: | chr23:24654043-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 119, 129 |
| Conread position: | 135-561 |
| Cow position: | chr23:24560879-24560453 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 283, 292 |
| Conread position: | 137-548 |
| Cow position: | chr23:24536032-24535621 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 274, 285 |
| Conread position: | 140-530 |
| Cow position: | chr23:25724111-25723721 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 179-562 |
| Cow position: | chr23:24626279-24626662 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 208-561 |
| Cow position: | chr23:24547330-24546977 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 84, 98 |
| Conread position: | 223-553 |
| Cow position: | chr23:25724112-25723781 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 195, 199 |
| Conread position: | 229-544 |
| Cow position: | chr23:24654054-24654369 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 80 |
Show alignments to all cow chromosomes.