Cow genome map

Conread name: Ss1.1-reje28b_k1.5

Conread position: 8-435
Cow position: chr24:17077874-17077448 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 269
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 181, 168

Conread position: 8-540
Cow position: chr24:17035655-17035123 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 288

Conread position: 9-477
Cow position: chr24:17035402-17034935 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 414

Conread position: 9-497
Cow position: chr24:17035738-17035250 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 287

Conread position: 9-539
Cow position: chr24:17035570-17035040 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-540
Cow position: chr24:17036242-17035711 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 300

Conread position: 9-545
Cow position: chr24:17036410-17035874 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 167

Conread position: 9-548
Cow position: chr24:17035990-17035451 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 159

Conread position: 10-209
Cow position: chr24:17070848-17071047 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 136
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 10-288
Cow position: chr24:17070764-17071042 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 10-296
Cow position: chr24:17013217-17013504 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 81, 73

Conread position: 10-545
Cow position: chr24:17036574-17036042 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 21

Conread position: 11-372
Cow position: chr24:17070681-17071042 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 124

Conread position: 11-561
Cow position: chr24:17035820-17035270 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 298

Conread position: 11-562
Cow position: chr24:17035904-17035353 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 298

Conread position: 19-545
Cow position: chr24:17036484-17035958 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 280

Conread position: 23-380
Cow position: chr24:17013146-17013503 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-497
Cow position: chr24:17077942-17077470 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 152

Conread position: 24-545
Cow position: chr24:17036143-17035622 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 285

Conread position: 26-540
Cow position: chr24:17070528-17071042 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 277

Conread position: 26-553
Cow position: chr24:17036309-17035781 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 283

Conread position: 26-553
Cow position: chr24:17078108-17077580 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 270

Conread position: 26-562
Cow position: chr24:17070444-17070980 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 273

Conread position: 27-545
Cow position: chr24:17036056-17035538 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 225

Conread position: 28-571
Cow position: chr24:17078022-17077480 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 155

Conread position: 53-252
Cow position: chr24:16986442-16986641 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 109, 100

Conread position: 54-561
Cow position: chr24:17070388-17070895 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 255

Conread position: 65-545
Cow position: chr24:17078153-17077673 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 71

Conread position: 107-542
Cow position: chr24:17078363-17077928 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 245
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 273, 283

Conread position: 135-487
Cow position: chr24:17013174-17013525 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 230
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 156, 161

Conread position: 137-350
Cow position: chr24:16986442-16986655 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 125, 100

Conread position: 179-553
Cow position: chr24:17036573-17036201 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 243
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 239, 24

Conread position: 186-553
Cow position: chr24:17013143-17013508 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 244
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 31, 11

Conread position: 229-567
Cow position: chr24:17036607-17036272 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 213
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 34, 28

Conread position: 314-567
Cow position: chr24:17013185-17013438 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.