Cow genome map


           Conread name:
           Ss1.1-reje28b_k1.5
        

               Conread position:
               1-290
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               200
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-562
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 174
               

               Conread position:
               2-562
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 28
               

               Conread position:
               3-330
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               17, 87
               

               Conread position:
               3-384
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               182, 17
               

               Conread position:
               3-492
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               300
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               9, 178
               

               Conread position:
               3-561
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 297
               

               Conread position:
               7-387
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 76
               

               Conread position:
               7-462
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               290
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               36, 29
               

               Conread position:
               7-545
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 52
               

               Conread position:
               7-565
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               351
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               87, 79
               

               Conread position:
               7-568
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               345
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               173, 169
               

               Conread position:
               8-372
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               254, 228
               

               Conread position:
               8-548
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 255
               

               Conread position:
               8-562
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 29
               

               Conread position:
               9-210
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               9-286
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               179, 161
               

               Conread position:
               9-391
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               281, 290
               

               Conread position:
               9-409
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 254
               

               Conread position:
               9-492
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 290
               

               Conread position:
               9-527
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 167
               

               Conread position:
               9-537
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               9-539
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 167
               

               Conread position:
               9-539
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               314
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               171, 167
               

               Conread position:
               9-545
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               334
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               179, 169
               

               Conread position:
               9-545
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               331
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               254, 250
               

               Conread position:
               9-548
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               343
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               96, 75
               

               Conread position:
               9-554
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 74
               

               Conread position:
               9-561
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 291
               

               Conread position:
               9-561
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 290
               

               Conread position:
               9-562
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 167
               

               Conread position:
               10-285
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               170, 160
               

               Conread position:
               10-462
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 286
               

               Conread position:
               10-496
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               309
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               86, 76
               

               Conread position:
               10-497
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 289
               

               Conread position:
               10-551
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 289
               

               Conread position:
               10-553
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 170
               

               Conread position:
               10-561
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 289
               

               Conread position:
               11-325
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               11-461
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               279
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               84, 27
               

               Conread position:
               11-498
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 83
               

               Conread position:
               11-525
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               307
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               121, 108
               

               Conread position:
               11-562
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               414, 409
               

               Conread position:
               12-369
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               244
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               168, 164
               

               Conread position:
               12-561
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 242
               

               Conread position:
               17-529
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               304
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               273, 282
               

               Conread position:
               19-554
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               324
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               169, 162
               

               Conread position:
               19-561
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               344
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               157, 161
               

               Conread position:
               19-562
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               328
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               110, 102
               

               Conread position:
               20-371
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               270, 279
               

               Conread position:
               20-419
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               269, 279
               

               Conread position:
               20-529
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               316
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               271, 283
               

               Conread position:
               20-530
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               305
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               213, 224
               

               Conread position:
               20-561
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 155
               

               Conread position:
               20-561
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 229
               

               Conread position:
               20-573
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               349
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               85, 179
               

               Conread position:
               26-415
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               264, 273
               

               Conread position:
               26-493
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 150
               

               Conread position:
               26-549
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 173
               

               Conread position:
               28-415
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               161, 56
               

               Conread position:
               29-561
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               263, 277
               

               Conread position:
               30-539
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               314
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               257, 269
               

               Conread position:
               30-540
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               31-561
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 90
               

               Conread position:
               38-369
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               7, 14
               

               Conread position:
               38-551
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 166
               

               Conread position:
               38-561
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 49
               

               Conread position:
               39-561
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               337
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               76, 50
               

               Conread position:
               40-364
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               223, 214
               

               Conread position:
               40-453
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               267
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               103, 110
               

               Conread position:
               41-538
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               287
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               252, 266
               

               Conread position:
               41-540
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 301
               

               Conread position:
               41-549
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               304
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               45, 39
               

               Conread position:
               42-540
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               300
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               58, 69
               

               Conread position:
               47-538
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               296
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               244, 252
               

               Conread position:
               53-539
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               287
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               181, 175
               

               Conread position:
               60-562
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 54
               

               Conread position:
               61-541
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 119
               

               Conread position:
               65-562
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 11
               

               Conread position:
               89-548
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 43
               

               Conread position:
               122-497
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               58, 54
               

               Conread position:
               122-561
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               367, 189
               

               Conread position:
               123-489
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               62, 11
               

               Conread position:
               124-538
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               293, 298
               

               Conread position:
               149-555
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               90, 97
               

               Conread position:
               180-561
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               260, 240
               

               Conread position:
               183-561
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               248
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               109, 126
               

               Conread position:
               184-548
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               79, 30
               

               Conread position:
               196-561
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               221, 257
               

               Conread position:
               203-530
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               61, 56
               

               Conread position:
               208-540
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               84, 91
               

               Conread position:
               209-540
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               51, 43
               

               Conread position:
               233-562
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               59, 63
               

               Conread position:
               260-540
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               31, 48
               
Show alignments to all cow chromosomes.