Cow genome map
| Conread name: | Ss1.1-reje28b_k1.5 |
| Conread position: | 1-281 |
| Cow position: | chr28:34673652-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 142, 7 |
| Conread position: | 2-374 |
| Cow position: | chr28:11333756-11333390 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 289, 0 |
| Conread position: | 2-480 |
| Cow position: | chr28:7810476-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 13, 61 |
| Conread position: | 3-500 |
| Cow position: | chr28:7757713-7758212 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 82 |
| Conread position: | 3-501 |
| Cow position: | chr28:9290133-9290626 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 3-540 |
| Cow position: | chr28:9252980-9253518 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 76 |
| Conread position: | 3-561 |
| Cow position: | chr28:7757461-7758020 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 290 |
| Conread position: | 3-561 |
| Cow position: | chr28:7758133-7758676 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 174 |
| Conread position: | 3-561 |
| Cow position: | chr28:9298613-9299167 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 348 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 4-561 |
| Cow position: | chr28:9252566-9253119 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 7-371 |
| Cow position: | chr28:34696214-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 181, 169 |
| Conread position: | 8-488 |
| Cow position: | chr28:11333834-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 291 |
| Conread position: | 8-540 |
| Cow position: | chr28:9253070-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 301 |
| Conread position: | 8-545 |
| Cow position: | chr28:7757551-7758088 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 244 |
| Conread position: | 9-539 |
| Cow position: | chr28:7757804-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 290 |
| Conread position: | 9-555 |
| Cow position: | chr28:7758224-7758754 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 311 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 283, 105 |
| Conread position: | 9-561 |
| Cow position: | chr28:7757384-7757936 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 128 |
| Conread position: | 11-418 |
| Cow position: | chr28:7758462-7758869 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 190, 186 |
| Conread position: | 11-422 |
| Cow position: | chr28:9290224-9290632 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 172, 36 |
| Conread position: | 20-432 |
| Cow position: | chr28:34696143-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-502 |
| Cow position: | chr28:7757647-7758129 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 307 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 20-541 |
| Cow position: | chr28:11333990-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 391, 406 |
| Conread position: | 26-497 |
| Cow position: | chr28:7758393-7758864 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 304, 316 |
| Conread position: | 26-497 |
| Cow position: | chr28:34673424-34673896 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 286 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 265, 283 |
| Conread position: | 26-542 |
| Cow position: | chr28:11334152-11333636 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 323 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 44, 51 |
| Conread position: | 26-561 |
| Cow position: | chr28:7810417-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 335 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 237, 108 |
| Conread position: | 26-564 |
| Cow position: | chr28:11334068-11333530 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 237, 228 |
| Conread position: | 32-335 |
| Cow position: | chr28:9290410-9290712 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 32-539 |
| Cow position: | chr28:34696071-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 316 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 156, 146 |
| Conread position: | 32-562 |
| Cow position: | chr28:34695987-34696517 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 322 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 37-453 |
| Cow position: | chr28:33210223-33210641 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 267 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 5, 263 |
| Conread position: | 39-422 |
| Cow position: | chr28:34673353-34673737 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 258, 251 |
| Conread position: | 40-541 |
| Cow position: | chr28:7758323-7758823 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 259 |
| Conread position: | 47-545 |
| Cow position: | chr28:9252941-9253439 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 211, 216 |
| Conread position: | 54-540 |
| Cow position: | chr28:7757345-7757831 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 304 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 126, 122 |
| Conread position: | 56-561 |
| Cow position: | chr28:11334206-11333701 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 60-497 |
| Cow position: | chr28:7810283-7810711 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 120, 105 |
| Conread position: | 103-561 |
| Cow position: | chr28:9252747-9253203 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 193, 145 |
| Conread position: | 121-538 |
| Cow position: | chr28:33210223-33210642 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 5, 110 |
| Conread position: | 128-493 |
| Cow position: | chr28:34673358-34673723 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 138-552 |
| Cow position: | chr28:9298580-9298993 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 150-568 |
| Cow position: | chr28:7757357-7757775 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 205-547 |
| Cow position: | chr28:33210223-33210566 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 5, 99 |
| Conread position: | 209-562 |
| Cow position: | chr28:7757254-7757601 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 117, 79 |
Show alignments to all cow chromosomes.