Cow genome map
| Conread name: | Ss1.1-reje28b_k1.5 |
| Conread position: | 4-358 |
| Cow position: | chr3:68027392-68027745 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 75, 6 |
| Conread position: | 4-386 |
| Cow position: | chr3:68045985-68046364 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 168, 6 |
| Conread position: | 7-530 |
| Cow position: | chr3:77351107-77350594 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 121, 69 |
| Conread position: | 8-338 |
| Cow position: | chr3:62743143-62743473 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 172, 158 |
| Conread position: | 8-462 |
| Cow position: | chr3:62722022-62721568 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 298 |
| Conread position: | 9-541 |
| Cow position: | chr3:62722105-62721573 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 290 |
| Conread position: | 9-545 |
| Cow position: | chr3:62742498-62743025 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 143 |
| Conread position: | 9-551 |
| Cow position: | chr3:62742914-62743435 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 346 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 254, 66 |
| Conread position: | 9-554 |
| Cow position: | chr3:62722189-62721643 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 9-562 |
| Cow position: | chr3:68045653-68046206 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 9-567 |
| Cow position: | chr3:68027060-68027618 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 290 |
| Conread position: | 10-535 |
| Cow position: | chr3:62742415-62742937 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 10-561 |
| Cow position: | chr3:68027145-68027696 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 253, 247 |
| Conread position: | 10-561 |
| Cow position: | chr3:68045738-68046289 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 169 |
| Conread position: | 11-482 |
| Cow position: | chr3:68027314-68027784 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 11-539 |
| Cow position: | chr3:68045823-68046351 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 162 |
| Conread position: | 12-561 |
| Cow position: | chr3:68027231-68027779 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 16-464 |
| Cow position: | chr3:68045912-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 78, 70 |
| Conread position: | 17-486 |
| Cow position: | chr3:62743073-62743534 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 231, 43 |
| Conread position: | 20-551 |
| Cow position: | chr3:62722262-62721731 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 156 |
| Conread position: | 20-561 |
| Cow position: | chr3:62742342-62742877 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 339 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 156, 12 |
| Conread position: | 20-562 |
| Cow position: | chr3:62722346-62721804 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 25-561 |
| Cow position: | chr3:68045585-68046121 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 266, 284 |
| Conread position: | 28-497 |
| Cow position: | chr3:77351169-77350708 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 161, 64 |
| Conread position: | 31-561 |
| Cow position: | chr3:62742269-62742793 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 231, 83 |
| Conread position: | 54-549 |
| Cow position: | chr3:68027021-68027516 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 298 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-501 |
| Cow position: | chr3:62743033-62743468 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 230, 84 |
| Conread position: | 63-562 |
| Cow position: | chr3:62722387-62721888 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 98-562 |
| Cow position: | chr3:62742252-62742712 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 91, 77 |
Show alignments to all cow chromosomes.