Cow genome map
| Conread name: | Ss1.1-reje28b_k1.5 |
| Conread position: | 2-455 |
| Cow position: | chr7:42878728-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 175 |
| Conread position: | 3-540 |
| Cow position: | chr7:1439515-1440053 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 332 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 7, 74 |
| Conread position: | 6-416 |
| Cow position: | chr7:8325705-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 8-562 |
| Cow position: | chr7:11601136-11600582 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 234 |
| Conread position: | 9-353 |
| Cow position: | chr7:18390466-18390810 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 282, 302 |
| Conread position: | 9-414 |
| Cow position: | chr7:1438301-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 119, 135 |
| Conread position: | 9-493 |
| Cow position: | chr7:18390046-18390530 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 308 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 112, 123 |
| Conread position: | 9-561 |
| Cow position: | chr7:11601051-11600499 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 158 |
| Conread position: | 10-342 |
| Cow position: | chr7:1015160-1015494 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 86, 76 |
| Conread position: | 10-501 |
| Cow position: | chr7:8243271-8243762 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 10-516 |
| Cow position: | chr7:18390299-18390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 10-561 |
| Cow position: | chr7:3180002-3180553 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 289 |
| Conread position: | 11-287 |
| Cow position: | chr7:11600713-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 178, 155 |
| Conread position: | 11-436 |
| Cow position: | chr7:18390384-18390809 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 289 |
| Conread position: | 11-537 |
| Cow position: | chr7:11600965-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 156 |
| Conread position: | 11-542 |
| Cow position: | chr7:3180339-3180869 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 64 |
| Conread position: | 11-545 |
| Cow position: | chr7:1014411-1014939 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 337 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 90, 76 |
| Conread position: | 11-545 |
| Cow position: | chr7:3180087-3180621 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 79 |
| Conread position: | 11-561 |
| Cow position: | chr7:1014825-1015375 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 93 |
| Conread position: | 11-561 |
| Cow position: | chr7:3179835-3180385 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 73 |
| Conread position: | 12-537 |
| Cow position: | chr7:1014079-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 149, 9 |
| Conread position: | 12-549 |
| Cow position: | chr7:18390133-18390671 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 234 |
| Conread position: | 17-371 |
| Cow position: | chr7:1015083-1015437 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 18-493 |
| Cow position: | chr7:8277823-8278300 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 18-539 |
| Cow position: | chr7:18390223-18390744 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 148 |
| Conread position: | 20-416 |
| Cow position: | chr7:8277995-8278391 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 20-455 |
| Cow position: | chr7:11600872-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 20-493 |
| Cow position: | chr7:8325216-8325689 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 20-497 |
| Cow position: | chr7:8325132-8325609 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 146, 164 |
| Conread position: | 20-537 |
| Cow position: | chr7:42878793-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 63 |
| Conread position: | 20-548 |
| Cow position: | chr7:1014750-1015278 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 20-561 |
| Cow position: | chr7:3180180-3180721 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 223 |
| Conread position: | 24-330 |
| Cow position: | chr7:8243705-8244009 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 94 |
| Conread position: | 24-493 |
| Cow position: | chr7:8243034-8243502 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 142, 151 |
| Conread position: | 24-493 |
| Cow position: | chr7:8277579-8278048 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 24-493 |
| Cow position: | chr7:8325388-8325857 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 165, 155 |
| Conread position: | 24-493 |
| Cow position: | chr7:8325640-8326109 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 24-555 |
| Cow position: | chr7:8243453-8243984 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 320 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 165, 140 |
| Conread position: | 24-561 |
| Cow position: | chr7:8324884-8325421 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 339 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 24-561 |
| Cow position: | chr7:42879209-42878672 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 276 |
| Conread position: | 25-493 |
| Cow position: | chr7:8278252-8278711 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 25-545 |
| Cow position: | chr7:1014923-1015443 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 284 |
| Conread position: | 26-255 |
| Cow position: | chr7:1440043-1440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 26-331 |
| Cow position: | chr7:1439960-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 26-497 |
| Cow position: | chr7:1439793-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 299 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 150, 49 |
| Conread position: | 26-542 |
| Cow position: | chr7:3179766-3180282 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 270 |
| Conread position: | 26-542 |
| Cow position: | chr7:8325474-8325990 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 311 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 163, 143 |
| Conread position: | 26-545 |
| Cow position: | chr7:1014672-1015191 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 26-545 |
| Cow position: | chr7:3179934-3180453 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 226 |
| Conread position: | 26-545 |
| Cow position: | chr7:42878955-42878436 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 225 |
| Conread position: | 26-548 |
| Cow position: | chr7:42879039-42878517 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 469, 483 |
| Conread position: | 26-549 |
| Cow position: | chr7:42878871-42878348 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 141 |
| Conread position: | 26-555 |
| Cow position: | chr7:3180270-3180799 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 273 |
| Conread position: | 26-561 |
| Cow position: | chr7:11601202-11600667 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 280 |
| Conread position: | 26-562 |
| Cow position: | chr7:42879123-42878587 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 233 |
| Conread position: | 27-462 |
| Cow position: | chr7:1015009-1015444 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 227 |
| Conread position: | 28-497 |
| Cow position: | chr7:1439457-1439927 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 293 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 28-497 |
| Cow position: | chr7:8277331-8277801 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 56 |
| Conread position: | 28-568 |
| Cow position: | chr7:1439712-1440249 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 337 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 30-561 |
| Cow position: | chr7:42879371-42878840 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 53 |
| Conread position: | 31-561 |
| Cow position: | chr7:8325563-8326093 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 72, 57 |
| Conread position: | 32-497 |
| Cow position: | chr7:8243545-8244009 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 32-555 |
| Cow position: | chr7:1014348-1014865 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 329 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 37-500 |
| Cow position: | chr7:8324729-8325192 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 79, 50 |
| Conread position: | 42-561 |
| Cow position: | chr7:18389995-18390514 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 96, 109 |
| Conread position: | 47-561 |
| Cow position: | chr7:42879439-42878924 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 40 |
| Conread position: | 49-554 |
| Cow position: | chr7:3179705-3180211 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 206 |
| Conread position: | 64-542 |
| Cow position: | chr7:42879253-42878775 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 236 |
| Conread position: | 69-462 |
| Cow position: | chr7:1014217-1014610 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 193, 185 |
| Conread position: | 103-562 |
| Cow position: | chr7:11601209-11600750 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 288 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 133-561 |
| Cow position: | chr7:3179705-3180133 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 166 |
| Conread position: | 267-561 |
| Cow position: | chr7:3179671-3179965 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 249, 241 |
Show alignments to all cow chromosomes.