Cow genome map
| Conread name: | Ss1.1-reje28b_k1.5 |
| Conread position: | 3-484 |
| Cow position: | chr8:48407249-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 168 |
| Conread position: | 3-553 |
| Cow position: | chr8:48407331-48406781 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 5 |
| Conread position: | 3-562 |
| Cow position: | chr8:46815676-46816230 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 339 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 7, 109 |
| Conread position: | 3-562 |
| Cow position: | chr8:46816594-46817154 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 174 |
| Conread position: | 7-555 |
| Cow position: | chr8:48406908-48406360 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 158 |
| Conread position: | 7-561 |
| Cow position: | chr8:45200815-45201370 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 86 |
| Conread position: | 8-380 |
| Cow position: | chr8:45201573-45201944 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 283, 291 |
| Conread position: | 9-561 |
| Cow position: | chr8:55581042-55581594 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 77 |
| Conread position: | 10-463 |
| Cow position: | chr8:55581295-55581748 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 10-540 |
| Cow position: | chr8:45200987-45201517 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 10-540 |
| Cow position: | chr8:48406989-48406459 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 328 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 254, 243 |
| Conread position: | 10-545 |
| Cow position: | chr8:55581211-55581746 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 242 |
| Conread position: | 11-502 |
| Cow position: | chr8:55580876-55581367 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 285 |
| Conread position: | 11-537 |
| Cow position: | chr8:48406820-48406294 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 325 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 11-542 |
| Cow position: | chr8:48407072-48406541 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 241 |
| Conread position: | 11-561 |
| Cow position: | chr8:55580960-55581510 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 288 |
| Conread position: | 11-562 |
| Cow position: | chr8:55581128-55581679 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 246 |
| Conread position: | 17-554 |
| Cow position: | chr8:48407570-48407032 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 19-379 |
| Cow position: | chr8:46817031-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 278, 272 |
| Conread position: | 19-562 |
| Cow position: | chr8:46816107-46816650 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 212 |
| Conread position: | 20-542 |
| Cow position: | chr8:46816360-46816882 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 276 |
| Conread position: | 20-549 |
| Cow position: | chr8:46816864-46817392 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 91 |
| Conread position: | 20-562 |
| Cow position: | chr8:46816024-46816566 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 156 |
| Conread position: | 21-488 |
| Cow position: | chr8:48406728-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 295 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 24-545 |
| Cow position: | chr8:45201253-45201774 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 239 |
| Conread position: | 24-561 |
| Cow position: | chr8:46816448-46816985 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 239 |
| Conread position: | 26-506 |
| Cow position: | chr8:45201507-45201987 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 273 |
| Conread position: | 26-540 |
| Cow position: | chr8:45201423-45201937 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 26-540 |
| Cow position: | chr8:48407393-48406879 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 150 |
| Conread position: | 26-542 |
| Cow position: | chr8:45201171-45201687 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 399 |
| Conread position: | 26-545 |
| Cow position: | chr8:45201339-45201858 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 399 |
| Conread position: | 26-553 |
| Cow position: | chr8:46816702-46817230 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 270 |
| Conread position: | 26-561 |
| Cow position: | chr8:45201087-45201622 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 195 |
| Conread position: | 26-562 |
| Cow position: | chr8:46815943-46816482 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 114 |
| Conread position: | 26-562 |
| Cow position: | chr8:46816198-46816734 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 120 |
| Conread position: | 26-562 |
| Cow position: | chr8:48407477-48406941 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 233 |
| Conread position: | 27-545 |
| Cow position: | chr8:46816283-46816801 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 217 |
| Conread position: | 27-548 |
| Cow position: | chr8:55580808-55581329 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 185, 202 |
| Conread position: | 28-541 |
| Cow position: | chr8:46816788-46817301 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 173 |
| Conread position: | 31-553 |
| Cow position: | chr8:46816539-46817062 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 145 |
| Conread position: | 40-549 |
| Cow position: | chr8:48407631-48407122 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 52-545 |
| Cow position: | chr8:55580749-55581242 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 56-561 |
| Cow position: | chr8:45200949-45201454 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 321 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 62-494 |
| Cow position: | chr8:6958059-6957628 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 351, 276 |
| Conread position: | 233-561 |
| Cow position: | chr8:55580762-55581090 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 21 |
Show alignments to all cow chromosomes.