Cow genome map

Conread name: Ss1.1-reru03c_m20.5

Conread position: 66-784
Cow position: chr13:56333469-56334190 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 66

Conread position: 131-791
Cow position: chr13:39984133-39984792 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 28

Conread position: 138-475
Cow position: chr13:56292126-56291789 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 225
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 135, 23

Conread position: 138-747
Cow position: chr13:56333704-56334321 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 18

Conread position: 138-777
Cow position: chr13:39983888-39984526 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 138-779
Cow position: chr13:39984224-39984864 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 18

Conread position: 138-781
Cow position: chr13:39984056-39984698 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 22

Conread position: 139-777
Cow position: chr13:39983973-39984610 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 22

Conread position: 144-776
Cow position: chr13:56292536-56291909 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 82

Conread position: 147-645
Cow position: chr13:56317345-56317833 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 311
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 62, 12

Conread position: 152-642
Cow position: chr13:56292270-56291790 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 384, 72

Conread position: 153-724
Cow position: chr13:39930650-39931218 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 220

Conread position: 153-734
Cow position: chr13:39984322-39984903 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 125

Conread position: 153-766
Cow position: chr13:22125015-22125628 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 364
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 81, 76

Conread position: 160-784
Cow position: chr13:56292436-56291816 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 160-792
Cow position: chr13:56292688-56292061 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 396
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 124, 171

Conread position: 162-783
Cow position: chr13:29183811-29183202 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 385
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 10, 105

Conread position: 164-780
Cow position: chr13:56333645-56334270 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 50

Conread position: 165-711
Cow position: chr13:22125111-22125657 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 315
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 137

Conread position: 165-783
Cow position: chr13:22124691-22125309 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 351
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 406, 399

Conread position: 171-765
Cow position: chr13:39930584-39931176 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 111

Conread position: 171-783
Cow position: chr13:22124949-22125561 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 353
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 97, 111

Conread position: 176-781
Cow position: chr13:39983841-39984446 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 100

Conread position: 185-683
Cow position: chr13:24162857-24163355 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 292
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 79

Conread position: 224-775
Cow position: chr13:39983721-39984272 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 115

Conread position: 244-718
Cow position: chr13:56317356-56317822 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 295
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 51, 42

Conread position: 248-767
Cow position: chr13:56292847-56292333 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 327
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 295, 72

Conread position: 296-648
Cow position: chr13:56317929-56318287 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 226
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 152, 134

Conread position: 302-766
Cow position: chr13:24162890-24163354 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 275
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 302-783
Cow position: chr13:39930631-39931112 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 71

Conread position: 303-789
Cow position: chr13:56333532-56334019 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 54

Conread position: 308-784
Cow position: chr13:39983721-39984197 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 303
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 175, 188

Conread position: 321-766
Cow position: chr13:41118840-41118387 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 278
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 117, 9

Conread position: 329-725
Cow position: chr13:56292850-56292459 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 249
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 207, 75

Conread position: 342-784
Cow position: chr13:29183798-29183360 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 275
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 225, 101

Conread position: 386-704
Cow position: chr13:24162470-24162788 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 199
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 79

Conread position: 405-781
Cow position: chr13:56317350-56317717 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 239
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 209, 7

Conread position: 423-783
Cow position: chr13:39930584-39930944 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 236
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 178, 184

Conread position: 464-775
Cow position: chr13:56317929-56318240 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 200
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 86, 75

Conread position: 473-772
Cow position: chr13:56292877-56292580 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 195
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 102

Conread position: 534-776
Cow position: chr13:56292898-56292660 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 44

Conread position: 548-778
Cow position: chr13:56317929-56318159 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 72

Show alignments to all cow chromosomes.