Cow genome map
| Conread name: | Ss1.1-reru03c_m20.5 |
| Conread position: | 138-772 |
| Cow position: | chr17:22452306-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 18 |
| Conread position: | 138-772 |
| Cow position: | chr17:22590027-22589394 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 18 |
| Conread position: | 138-775 |
| Cow position: | chr17:22552693-22552057 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 18 |
| Conread position: | 138-776 |
| Cow position: | chr17:22552189-22551552 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 138-776 |
| Cow position: | chr17:22552525-22551888 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 18 |
| Conread position: | 138-778 |
| Cow position: | chr17:22590195-22589556 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 18 |
| Conread position: | 139-779 |
| Cow position: | chr17:22589858-22589219 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 21 |
| Conread position: | 144-764 |
| Cow position: | chr17:22552099-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 144-776 |
| Cow position: | chr17:22552351-22551720 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 12 |
| Conread position: | 144-781 |
| Cow position: | chr17:22589937-22589301 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 144-792 |
| Cow position: | chr17:22552855-22552208 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 12 |
| Conread position: | 147-775 |
| Cow position: | chr17:22553022-22552393 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 152 |
| Conread position: | 151-783 |
| Cow position: | chr17:22552597-22551965 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 220 |
| Conread position: | 152-504 |
| Cow position: | chr17:22498803-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 206, 213 |
| Conread position: | 152-739 |
| Cow position: | chr17:22589762-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 152-775 |
| Cow position: | chr17:22590098-22589475 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 131 |
| Conread position: | 152-783 |
| Cow position: | chr17:22552260-22551629 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 145 |
| Conread position: | 153-657 |
| Cow position: | chr17:22589677-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 288 |
| Conread position: | 153-675 |
| Cow position: | chr17:22498970-22498457 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 200 |
| Conread position: | 153-692 |
| Cow position: | chr17:22473423-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 212 |
| Conread position: | 153-749 |
| Cow position: | chr17:22499138-22498542 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 204 |
| Conread position: | 153-767 |
| Cow position: | chr17:22452208-22451594 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 44 |
| Conread position: | 153-779 |
| Cow position: | chr17:22552931-22552305 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 144 |
| Conread position: | 153-783 |
| Cow position: | chr17:22552763-22552133 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 133 |
| Conread position: | 153-784 |
| Cow position: | chr17:22499306-22498675 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 288 |
| Conread position: | 153-784 |
| Cow position: | chr17:22552427-22551796 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 133 |
| Conread position: | 153-784 |
| Cow position: | chr17:22553099-22552468 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 376 |
| Conread position: | 153-792 |
| Cow position: | chr17:22499222-22498583 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 204 |
| Conread position: | 156-777 |
| Cow position: | chr17:22499387-22498766 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-783 |
| Cow position: | chr17:22452373-22451746 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 550, 539 |
| Conread position: | 158-775 |
| Cow position: | chr17:22590260-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-756 |
| Cow position: | chr17:22499048-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 159-765 |
| Cow position: | chr17:22473345-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 160-784 |
| Cow position: | chr17:22473262-22473886 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 109 |
| Conread position: | 193-791 |
| Cow position: | chr17:22590308-22589710 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 12 |
| Conread position: | 204-788 |
| Cow position: | chr17:22452409-22451826 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 575, 0 |
| Conread position: | 211-779 |
| Cow position: | chr17:22499416-22498848 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 400 |
| Conread position: | 214-783 |
| Cow position: | chr17:22553122-22552553 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 330-789 |
| Cow position: | chr17:22553174-22552714 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 451, 0 |
| Conread position: | 344-785 |
| Cow position: | chr17:22452522-22452080 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 454-780 |
| Cow position: | chr17:22499425-22499099 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 19 |
Show alignments to all cow chromosomes.