Cow genome map
| Conread name: | Ss1.1-reru03c_m20.5 |
| Conread position: | 99-782 |
| Cow position: | chr19:14960523-14959842 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 126-758 |
| Cow position: | chr19:20635651-20635022 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 138-531 |
| Cow position: | chr19:14948391-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 128, 21 |
| Conread position: | 138-640 |
| Cow position: | chr19:14940568-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 138-743 |
| Cow position: | chr19:23649882-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 21 |
| Conread position: | 138-774 |
| Cow position: | chr19:23614264-23614899 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 138-778 |
| Cow position: | chr19:23614348-23614987 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 18 |
| Conread position: | 138-778 |
| Cow position: | chr19:23614432-23615071 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 138-784 |
| Cow position: | chr19:14940400-14941045 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 139-440 |
| Cow position: | chr19:14959165-14958871 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 140-778 |
| Cow position: | chr19:23613341-23613979 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 144-778 |
| Cow position: | chr19:23614186-23614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 12 |
| Conread position: | 144-784 |
| Cow position: | chr19:23649468-23650107 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 12 |
| Conread position: | 146-778 |
| Cow position: | chr19:23613852-23614483 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 10 |
| Conread position: | 148-598 |
| Cow position: | chr19:14916131-14916561 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 114, 84 |
| Conread position: | 148-765 |
| Cow position: | chr19:23613770-23614386 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 8 |
| Conread position: | 152-495 |
| Cow position: | chr19:23597370-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 152-710 |
| Cow position: | chr19:14940497-14941055 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 134 |
| Conread position: | 152-743 |
| Cow position: | chr19:23614529-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 217 |
| Conread position: | 152-767 |
| Cow position: | chr19:14915966-14916562 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 386 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 152-775 |
| Cow position: | chr19:20677872-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 459 |
| Conread position: | 152-775 |
| Cow position: | chr19:20678040-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 290 |
| Conread position: | 152-775 |
| Cow position: | chr19:23613521-23614144 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 152-777 |
| Cow position: | chr19:23614025-23614650 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 152-779 |
| Cow position: | chr19:23597034-23597662 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 614, 0 |
| Conread position: | 152-780 |
| Cow position: | chr19:23613437-23614065 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 152-783 |
| Cow position: | chr19:14939993-14940624 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 152-783 |
| Cow position: | chr19:23614109-23614740 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 152-784 |
| Cow position: | chr19:23649811-23650443 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 152-784 |
| Cow position: | chr19:43570377-43569755 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 152-785 |
| Cow position: | chr19:23649727-23650360 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 153-592 |
| Cow position: | chr19:20635459-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 217 |
| Conread position: | 153-663 |
| Cow position: | chr19:23597203-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 117 |
| Conread position: | 153-733 |
| Cow position: | chr19:43570218-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 373 |
| Conread position: | 153-740 |
| Cow position: | chr19:14959395-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 153-775 |
| Cow position: | chr19:20678125-20678745 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 153-776 |
| Cow position: | chr19:20677453-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 153-777 |
| Cow position: | chr19:14959967-14959359 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 153-777 |
| Cow position: | chr19:23613606-23614230 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 204 |
| Conread position: | 153-777 |
| Cow position: | chr19:23613942-23614566 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 519, 524 |
| Conread position: | 153-778 |
| Cow position: | chr19:14940078-14940703 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-778 |
| Cow position: | chr19:23613690-23614315 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-779 |
| Cow position: | chr19:20677957-20678583 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 153-781 |
| Cow position: | chr19:14960051-14959439 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 153-781 |
| Cow position: | chr19:23596954-23597579 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 79 |
| Conread position: | 153-781 |
| Cow position: | chr19:23649308-23649936 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-782 |
| Cow position: | chr19:14940330-14940959 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-782 |
| Cow position: | chr19:20677705-20678333 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 132 |
| Conread position: | 153-782 |
| Cow position: | chr19:23649560-23650189 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-783 |
| Cow position: | chr19:14940162-14940792 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 130 |
| Conread position: | 153-783 |
| Cow position: | chr19:14959563-14958948 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 125 |
| Conread position: | 153-784 |
| Cow position: | chr19:14960135-14959520 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 314 |
| Conread position: | 153-784 |
| Cow position: | chr19:20636110-20635500 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 388 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 325, 59 |
| Conread position: | 153-784 |
| Cow position: | chr19:23596870-23597498 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 136 |
| Conread position: | 153-787 |
| Cow position: | chr19:14959479-14958861 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 156-747 |
| Cow position: | chr19:23597122-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 156-775 |
| Cow position: | chr19:14940249-14940869 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 611, 0 |
| Conread position: | 156-775 |
| Cow position: | chr19:14959798-14959202 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 38 |
| Conread position: | 157-779 |
| Cow position: | chr19:14960381-14959763 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 159-749 |
| Cow position: | chr19:20678215-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 133 |
| Conread position: | 159-792 |
| Cow position: | chr19:23649398-23650031 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 143 |
| Conread position: | 160-603 |
| Cow position: | chr19:14948453-14948011 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 285 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 200, 53 |
| Conread position: | 162-780 |
| Cow position: | chr19:20677630-20678248 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 400 |
| Conread position: | 174-772 |
| Cow position: | chr19:43570278-43569687 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 17 |
| Conread position: | 174-782 |
| Cow position: | chr19:20677309-20677914 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 50 |
| Conread position: | 218-784 |
| Cow position: | chr19:23649289-23649855 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 48 |
| Conread position: | 224-777 |
| Cow position: | chr19:20677440-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 217 |
| Conread position: | 224-778 |
| Cow position: | chr19:20635640-20635086 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 388 |
| Conread position: | 232-784 |
| Cow position: | chr19:14939987-14940541 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 127 |
| Conread position: | 235-784 |
| Cow position: | chr19:23596868-23597414 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 258-784 |
| Cow position: | chr19:14960448-14959924 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 295-784 |
| Cow position: | chr19:23649282-23649771 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 459, 455 |
| Conread position: | 297-784 |
| Cow position: | chr19:14948484-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 303-779 |
| Cow position: | chr19:43570394-43569928 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 109 |
| Conread position: | 316-782 |
| Cow position: | chr19:14915962-14916425 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 167 |
| Conread position: | 319-778 |
| Cow position: | chr19:20635712-20635254 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 387-775 |
| Cow position: | chr19:14939976-14940365 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 0 |
| Conread position: | 394-781 |
| Cow position: | chr19:23596859-23597243 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 402-791 |
| Cow position: | chr19:23613351-23613741 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 0 |
| Conread position: | 417-777 |
| Cow position: | chr19:43570447-43570098 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 449-782 |
| Cow position: | chr19:23649266-23649601 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 13, 225 |
| Conread position: | 474-778 |
| Cow position: | chr19:14915953-14916256 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 496-779 |
| Cow position: | chr19:43570452-43570180 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 538-742 |
| Cow position: | chr19:23668554-23668757 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 543-784 |
| Cow position: | chr19:23596840-23597078 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 567-784 |
| Cow position: | chr19:14960475-14960258 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 46 |
Show alignments to all cow chromosomes.