Cow genome map

Conread name: Ss1.1-reru03c_m20.5

Conread position: 99-782
Cow position:
Alignm length: 687
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 67

Conread position: 126-758
Cow position:
Alignm length: 633
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 138-531
Cow position:
Alignm length: 397
Alignm identity: 257
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 128, 21

Conread position: 138-640
Cow position:
Alignm length: 503
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 138-743
Cow position:
Alignm length: 607
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 21

Conread position: 138-774
Cow position:
Alignm length: 640
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 18

Conread position: 138-778
Cow position:
Alignm length: 643
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 18

Conread position: 138-778
Cow position:
Alignm length: 641
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 138-784
Cow position:
Alignm length: 647
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 139-440
Cow position:
Alignm length: 302
Alignm identity: 201
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 21, 0

Conread position: 140-778
Cow position:
Alignm length: 639
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 144-778
Cow position:
Alignm length: 637
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 12

Conread position: 144-784
Cow position:
Alignm length: 644
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 12

Conread position: 146-778
Cow position:
Alignm length: 634
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 10

Conread position: 148-598
Cow position:
Alignm length: 457
Alignm identity: 295
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 114, 84

Conread position: 148-765
Cow position:
Alignm length: 623
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 8

Conread position: 152-495
Cow position:
Alignm length: 346
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 44

Conread position: 152-710
Cow position:
Alignm length: 560
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 134

Conread position: 152-743
Cow position:
Alignm length: 594
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 217

Conread position: 152-767
Cow position:
Alignm length: 620
Alignm identity: 386
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 38, 55

Conread position: 152-775
Cow position:
Alignm length: 627
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 459

Conread position: 152-775
Cow position:
Alignm length: 628
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 290

Conread position: 152-775
Cow position:
Alignm length: 627
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 53

Conread position: 152-777
Cow position:
Alignm length: 627
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 49

Conread position: 152-779
Cow position:
Alignm length: 629
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 614, 0

Conread position: 152-780
Cow position:
Alignm length: 629
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 152-783
Cow position:
Alignm length: 632
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 152-783
Cow position:
Alignm length: 632
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 152-784
Cow position:
Alignm length: 635
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 45

Conread position: 152-784
Cow position:
Alignm length: 633
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 152-785
Cow position:
Alignm length: 635
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 44

Conread position: 153-592
Cow position:
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 217

Conread position: 153-663
Cow position:
Alignm length: 514
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 117

Conread position: 153-733
Cow position:
Alignm length: 583
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 373

Conread position: 153-740
Cow position:
Alignm length: 589
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 44

Conread position: 153-775
Cow position:
Alignm length: 628
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 41

Conread position: 153-776
Cow position:
Alignm length: 629
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 53

Conread position: 153-777
Cow position:
Alignm length: 627
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 42

Conread position: 153-777
Cow position:
Alignm length: 627
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 204

Conread position: 153-777
Cow position:
Alignm length: 626
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 519, 524

Conread position: 153-778
Cow position:
Alignm length: 626
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-778
Cow position:
Alignm length: 626
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-779
Cow position:
Alignm length: 629
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 73

Conread position: 153-781
Cow position:
Alignm length: 635
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 42

Conread position: 153-781
Cow position:
Alignm length: 631
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 79

Conread position: 153-781
Cow position:
Alignm length: 629
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-782
Cow position:
Alignm length: 630
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-782
Cow position:
Alignm length: 631
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 132

Conread position: 153-782
Cow position:
Alignm length: 630
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-783
Cow position:
Alignm length: 632
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 130

Conread position: 153-783
Cow position:
Alignm length: 633
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 125

Conread position: 153-784
Cow position:
Alignm length: 635
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 378, 314

Conread position: 153-784
Cow position:
Alignm length: 634
Alignm identity: 388
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 325, 59

Conread position: 153-784
Cow position:
Alignm length: 634
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 136

Conread position: 153-787
Cow position:
Alignm length: 639
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 42

Conread position: 156-747
Cow position:
Alignm length: 594
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 38

Conread position: 156-775
Cow position:
Alignm length: 621
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 611, 0

Conread position: 156-775
Cow position:
Alignm length: 624
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 38

Conread position: 157-779
Cow position:
Alignm length: 624
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 37

Conread position: 159-749
Cow position:
Alignm length: 593
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 133

Conread position: 159-792
Cow position:
Alignm length: 636
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 143

Conread position: 160-603
Cow position:
Alignm length: 446
Alignm identity: 285
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 200, 53

Conread position: 162-780
Cow position:
Alignm length: 621
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 400

Conread position: 174-772
Cow position:
Alignm length: 601
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 17

Conread position: 174-782
Cow position:
Alignm length: 613
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 50

Conread position: 218-784
Cow position:
Alignm length: 569
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 48

Conread position: 224-777
Cow position:
Alignm length: 555
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 217

Conread position: 224-778
Cow position:
Alignm length: 556
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 395, 388

Conread position: 232-784
Cow position:
Alignm length: 556
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 127

Conread position: 235-784
Cow position:
Alignm length: 552
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 30

Conread position: 258-784
Cow position:
Alignm length: 528
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 24

Conread position: 295-784
Cow position:
Alignm length: 491
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 459, 455

Conread position: 297-784
Cow position:
Alignm length: 489
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 69

Conread position: 303-779
Cow position:
Alignm length: 478
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 109

Conread position: 316-782
Cow position:
Alignm length: 471
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 167

Conread position: 319-778
Cow position:
Alignm length: 460
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 387-775
Cow position:
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 0

Conread position: 394-781
Cow position:
Alignm length: 388
Alignm identity: 242
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 173, 0

Conread position: 402-791
Cow position:
Alignm length: 391
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 0

Conread position: 417-777
Cow position:
Alignm length: 362
Alignm identity: 239
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 50

Conread position: 449-782
Cow position:
Alignm length: 337
Alignm identity: 220
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 13, 225

Conread position: 474-778
Cow position:
Alignm length: 307
Alignm identity: 205
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 18

Conread position: 496-779
Cow position:
Alignm length: 285
Alignm identity: 194
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 29, 45

Conread position: 538-742
Cow position:
Alignm length: 205
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 543-784
Cow position:
Alignm length: 242
Alignm identity: 159
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 192, 0

Conread position: 567-784
Cow position:
Alignm length: 219
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 46

Show alignments to all cow chromosomes.