Cow genome map

Conread name: Ss1.1-reru03c_m20.5

Conread position: 81-775
Cow position:
Alignm length: 722
Alignm identity: 430
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 88, 234

Conread position: 101-691
Cow position:
Alignm length: 592
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 187

Conread position: 131-783
Cow position:
Alignm length: 653
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 138-739
Cow position:
Alignm length: 606
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 18

Conread position: 138-753
Cow position:
Alignm length: 617
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 478, 18

Conread position: 138-784
Cow position:
Alignm length: 650
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 18

Conread position: 138-784
Cow position:
Alignm length: 650
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 18

Conread position: 138-790
Cow position:
Alignm length: 654
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 23

Conread position: 151-784
Cow position:
Alignm length: 637
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 43

Conread position: 152-410
Cow position:
Alignm length: 261
Alignm identity: 172
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 42

Conread position: 152-523
Cow position:
Alignm length: 374
Alignm identity: 231
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 246, 251

Conread position: 152-527
Cow position:
Alignm length: 377
Alignm identity: 231
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 361, 271

Conread position: 152-573
Cow position:
Alignm length: 425
Alignm identity: 271
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 119, 138

Conread position: 152-656
Cow position:
Alignm length: 506
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 133

Conread position: 152-658
Cow position:
Alignm length: 511
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 45

Conread position: 152-663
Cow position:
Alignm length: 512
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 152-663
Cow position:
Alignm length: 513
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 217

Conread position: 152-694
Cow position:
Alignm length: 549
Alignm identity: 342
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 120, 135

Conread position: 152-734
Cow position:
Alignm length: 586
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 7

Conread position: 152-758
Cow position:
Alignm length: 615
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 45

Conread position: 152-775
Cow position:
Alignm length: 626
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 122

Conread position: 152-779
Cow position:
Alignm length: 630
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 224

Conread position: 152-781
Cow position:
Alignm length: 630
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 152-781
Cow position:
Alignm length: 633
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 118

Conread position: 152-784
Cow position:
Alignm length: 634
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 152-784
Cow position:
Alignm length: 636
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 7

Conread position: 152-792
Cow position:
Alignm length: 643
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 127

Conread position: 153-407
Cow position:
Alignm length: 255
Alignm identity: 176
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 153-490
Cow position:
Alignm length: 339
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 135

Conread position: 153-525
Cow position:
Alignm length: 374
Alignm identity: 241
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 224, 216

Conread position: 153-591
Cow position:
Alignm length: 442
Alignm identity: 283
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 45, 53

Conread position: 153-661
Cow position:
Alignm length: 513
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 40

Conread position: 153-663
Cow position:
Alignm length: 515
Alignm identity: 304
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 225, 205

Conread position: 153-746
Cow position:
Alignm length: 597
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 145

Conread position: 153-747
Cow position:
Alignm length: 598
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 138

Conread position: 153-747
Cow position:
Alignm length: 596
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 213

Conread position: 153-771
Cow position:
Alignm length: 619
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-775
Cow position:
Alignm length: 625
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 137

Conread position: 153-776
Cow position:
Alignm length: 624
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-777
Cow position:
Alignm length: 643
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 137

Conread position: 153-777
Cow position:
Alignm length: 628
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 145

Conread position: 153-777
Cow position:
Alignm length: 627
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 565, 544

Conread position: 153-778
Cow position:
Alignm length: 633
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 44

Conread position: 153-779
Cow position:
Alignm length: 630
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 41

Conread position: 153-779
Cow position:
Alignm length: 631
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 61

Conread position: 153-780
Cow position:
Alignm length: 629
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 40

Conread position: 153-781
Cow position:
Alignm length: 631
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 111

Conread position: 153-782
Cow position:
Alignm length: 630
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-782
Cow position:
Alignm length: 630
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-783
Cow position:
Alignm length: 631
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-783
Cow position:
Alignm length: 633
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 204

Conread position: 153-784
Cow position:
Alignm length: 649
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 153-784
Cow position:
Alignm length: 635
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 221

Conread position: 153-784
Cow position:
Alignm length: 633
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 213

Conread position: 153-784
Cow position:
Alignm length: 634
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 137

Conread position: 153-784
Cow position:
Alignm length: 634
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 113

Conread position: 153-784
Cow position:
Alignm length: 634
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 124

Conread position: 153-784
Cow position:
Alignm length: 633
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 213

Conread position: 153-784
Cow position:
Alignm length: 639
Alignm identity: 386
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 61, 44

Conread position: 153-790
Cow position:
Alignm length: 639
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 44

Conread position: 153-792
Cow position:
Alignm length: 643
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 145

Conread position: 153-792
Cow position:
Alignm length: 641
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 137

Conread position: 153-792
Cow position:
Alignm length: 642
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 131

Conread position: 156-781
Cow position:
Alignm length: 629
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 476, 463

Conread position: 156-790
Cow position:
Alignm length: 636
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 331

Conread position: 157-743
Cow position:
Alignm length: 590
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 216

Conread position: 157-775
Cow position:
Alignm length: 621
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 133

Conread position: 158-742
Cow position:
Alignm length: 591
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 130

Conread position: 158-778
Cow position:
Alignm length: 623
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 460, 453

Conread position: 159-523
Cow position:
Alignm length: 366
Alignm identity: 233
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 324, 262

Conread position: 159-775
Cow position:
Alignm length: 618
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 551, 536

Conread position: 159-783
Cow position:
Alignm length: 629
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 145

Conread position: 159-783
Cow position:
Alignm length: 629
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 135

Conread position: 160-779
Cow position:
Alignm length: 624
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 198

Conread position: 162-777
Cow position:
Alignm length: 622
Alignm identity: 378
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 52, 28

Conread position: 165-642
Cow position:
Alignm length: 479
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 121

Conread position: 165-747
Cow position:
Alignm length: 588
Alignm identity: 347
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 49, 29

Conread position: 165-772
Cow position:
Alignm length: 611
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 285

Conread position: 165-779
Cow position:
Alignm length: 619
Alignm identity: 374
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 118, 109

Conread position: 170-788
Cow position:
Alignm length: 624
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 112

Conread position: 174-777
Cow position:
Alignm length: 607
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 105

Conread position: 176-779
Cow position:
Alignm length: 606
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 531, 102

Conread position: 176-784
Cow position:
Alignm length: 611
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 269

Conread position: 188-783
Cow position:
Alignm length: 599
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 250

Conread position: 202-790
Cow position:
Alignm length: 589
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 580, 0

Conread position: 210-784
Cow position:
Alignm length: 578
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 164

Conread position: 213-778
Cow position:
Alignm length: 572
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 78

Conread position: 213-784
Cow position:
Alignm length: 576
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 161

Conread position: 214-782
Cow position:
Alignm length: 587
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 70

Conread position: 214-792
Cow position:
Alignm length: 579
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 565, 0

Conread position: 235-775
Cow position:
Alignm length: 542
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 225

Conread position: 237-781
Cow position:
Alignm length: 548
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 315

Conread position: 242-776
Cow position:
Alignm length: 535
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 243-777
Cow position:
Alignm length: 535
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 249-778
Cow position:
Alignm length: 533
Alignm identity: 326
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 133, 111

Conread position: 285-779
Cow position:
Alignm length: 512
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 9

Conread position: 295-770
Cow position:
Alignm length: 476
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 296-777
Cow position:
Alignm length: 488
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 158

Conread position: 296-779
Cow position:
Alignm length: 484
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 296-785
Cow position:
Alignm length: 493
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 236

Conread position: 297-751
Cow position:
Alignm length: 459
Alignm identity: 295
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 63, 68

Conread position: 297-777
Cow position:
Alignm length: 484
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 68

Conread position: 308-775
Cow position:
Alignm length: 470
Alignm identity: 270
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 235, 222

Conread position: 312-766
Cow position:
Alignm length: 455
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 314-783
Cow position:
Alignm length: 471
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 305

Conread position: 326-777
Cow position:
Alignm length: 456
Alignm identity: 293
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 133, 125

Conread position: 326-783
Cow position:
Alignm length: 460
Alignm identity: 285
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 133, 126

Conread position: 330-783
Cow position:
Alignm length: 454
Alignm identity: 282
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 333-781
Cow position:
Alignm length: 451
Alignm identity: 275
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 290, 280

Conread position: 375-784
Cow position:
Alignm length: 415
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 19

Conread position: 376-784
Cow position:
Alignm length: 426
Alignm identity: 244
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 300, 0

Conread position: 378-778
Cow position:
Alignm length: 401
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 380-779
Cow position:
Alignm length: 404
Alignm identity: 264
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 239, 231

Conread position: 380-790
Cow position:
Alignm length: 411
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 0

Conread position: 380-792
Cow position:
Alignm length: 413
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 416-783
Cow position:
Alignm length: 370
Alignm identity: 230
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 110, 122

Conread position: 416-783
Cow position:
Alignm length: 368
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 428-785
Cow position:
Alignm length: 360
Alignm identity: 223
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 251, 244

Conread position: 455-784
Cow position:
Alignm length: 330
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 538-781
Cow position:
Alignm length: 245
Alignm identity: 161
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 120, 112

Conread position: 539-769
Cow position:
Alignm length: 231
Alignm identity: 163
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 544-784
Cow position:
Alignm length: 242
Alignm identity: 170
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 135, 129

Conread position: 573-778
Cow position:
Alignm length: 206
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 636-792
Cow position:
Alignm length: 157
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.