Cow genome map
| Conread name: | Ss1.1-reru03c_m20.5 |
| Conread position: | 25-165 |
| Cow position: | chr23:24546987-24546847 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 129 |
| Conread position: | 33-781 |
| Cow position: | chr23:24522925-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 95 |
| Conread position: | 132-783 |
| Cow position: | chr23:25626434-25627082 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 19 |
| Conread position: | 137-784 |
| Cow position: | chr23:25626271-25626914 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 19 |
| Conread position: | 138-762 |
| Cow position: | chr23:24535971-24535351 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 541, 18 |
| Conread position: | 140-785 |
| Cow position: | chr23:24522408-24521761 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 144-784 |
| Cow position: | chr23:24547334-24546695 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 147-743 |
| Cow position: | chr23:24560723-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 9 |
| Conread position: | 148-784 |
| Cow position: | chr23:24639383-24640019 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 396 |
| Conread position: | 152-486 |
| Cow position: | chr23:25660406-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 126, 132 |
| Conread position: | 152-525 |
| Cow position: | chr23:24654120-24654487 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 152-747 |
| Cow position: | chr23:24639471-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 314 |
| Conread position: | 152-788 |
| Cow position: | chr23:25626033-25626667 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 133 |
| Conread position: | 153-337 |
| Cow position: | chr23:24626564-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 153-472 |
| Cow position: | chr23:25724039-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 153-587 |
| Cow position: | chr23:24639640-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 124 |
| Conread position: | 153-638 |
| Cow position: | chr23:24522645-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 153-641 |
| Cow position: | chr23:25698568-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 113 |
| Conread position: | 153-660 |
| Cow position: | chr23:25660239-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 124 |
| Conread position: | 153-777 |
| Cow position: | chr23:24547242-24546618 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 153-784 |
| Cow position: | chr23:24560802-24560171 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-436 |
| Cow position: | chr23:24521971-24521691 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 122 |
| Conread position: | 156-509 |
| Cow position: | chr23:24626399-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 0 |
| Conread position: | 156-640 |
| Cow position: | chr23:24560547-24560063 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 421 |
| Conread position: | 156-785 |
| Cow position: | chr23:25626121-25626747 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 157-593 |
| Cow position: | chr23:24626316-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 0 |
| Conread position: | 157-776 |
| Cow position: | chr23:24639308-24639927 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-643 |
| Cow position: | chr23:24654042-24654521 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 374 |
| Conread position: | 160-723 |
| Cow position: | chr23:25698645-25698082 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 33 |
| Conread position: | 160-777 |
| Cow position: | chr23:24560879-24560262 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 162 |
| Conread position: | 164-784 |
| Cow position: | chr23:25625961-25626581 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-782 |
| Cow position: | chr23:24536029-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 579, 0 |
| Conread position: | 171-585 |
| Cow position: | chr23:25724105-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 171-744 |
| Cow position: | chr23:25660173-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 106 |
| Conread position: | 171-784 |
| Cow position: | chr23:24639238-24639851 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 176-775 |
| Cow position: | chr23:25625889-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 193-675 |
| Cow position: | chr23:24626268-24626748 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 467, 0 |
| Conread position: | 203-784 |
| Cow position: | chr23:25698686-25698105 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 229 |
| Conread position: | 228-781 |
| Cow position: | chr23:25660146-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-781 |
| Cow position: | chr23:24560889-24560342 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 249-784 |
| Cow position: | chr23:24639232-24639767 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 157 |
| Conread position: | 249-792 |
| Cow position: | chr23:24536029-24535486 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-646 |
| Cow position: | chr23:25724107-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-778 |
| Cow position: | chr23:24560903-24560429 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 168 |
| Conread position: | 311-757 |
| Cow position: | chr23:24626302-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 0 |
| Conread position: | 311-775 |
| Cow position: | chr23:25660145-25660610 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 241 |
| Conread position: | 311-776 |
| Cow position: | chr23:24536051-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 439 |
| Conread position: | 313-646 |
| Cow position: | chr23:24521982-24521654 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 326-664 |
| Cow position: | chr23:24654042-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 327-784 |
| Cow position: | chr23:24639226-24639683 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 164 |
| Conread position: | 329-780 |
| Cow position: | chr23:25625958-25626409 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 337-730 |
| Cow position: | chr23:25724107-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 374 |
| Conread position: | 355-784 |
| Cow position: | chr23:24626261-24626691 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 397-690 |
| Cow position: | chr23:24521982-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 208, 254 |
| Conread position: | 402-782 |
| Cow position: | chr23:24522814-24522439 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 244, 24 |
| Conread position: | 402-784 |
| Cow position: | chr23:24560889-24560507 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 41 |
| Conread position: | 410-748 |
| Cow position: | chr23:24654042-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 422-783 |
| Cow position: | chr23:25724106-25723745 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 423-783 |
| Cow position: | chr23:25660173-25660533 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 443-782 |
| Cow position: | chr23:25698698-25698359 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 470-775 |
| Cow position: | chr23:24639201-24639506 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 180, 186 |
| Conread position: | 472-784 |
| Cow position: | chr23:24560903-24560591 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 494-779 |
| Cow position: | chr23:24654042-24654327 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 505-784 |
| Cow position: | chr23:25724107-25723828 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 506-775 |
| Cow position: | chr23:24639153-24639423 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 73 |
| Conread position: | 512-785 |
| Cow position: | chr23:25625889-25626162 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 568-790 |
| Cow position: | chr23:24536046-24535825 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 589-792 |
| Cow position: | chr23:25724107-25723904 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.