Cow genome map

Conread name: Ss1.1-reru03c_m20.5

Conread position: 18-152
Cow position: chr24:17070460-17070593 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 25-152
Cow position: chr24:17077918-17077791 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 138-778
Cow position: chr24:17035717-17035078 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 18

Conread position: 138-782
Cow position: chr24:17035885-17035242 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 18

Conread position: 144-785
Cow position: chr24:17070370-17071010 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 18

Conread position: 152-344
Cow position: chr24:17013334-17013525 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 169, 0

Conread position: 152-576
Cow position: chr24:17070629-17071053 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 40

Conread position: 152-671
Cow position: chr24:17035452-17034934 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 141

Conread position: 152-777
Cow position: chr24:17078259-17077634 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 152-792
Cow position: chr24:17036292-17035652 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 114

Conread position: 152-792
Cow position: chr24:17036376-17035736 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 195

Conread position: 153-614
Cow position: chr24:17077922-17077462 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 42

Conread position: 153-747
Cow position: chr24:17070462-17071056 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-780
Cow position: chr24:17036207-17035580 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 26

Conread position: 153-782
Cow position: chr24:17035619-17034990 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 544, 551

Conread position: 153-783
Cow position: chr24:17035955-17035325 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 520, 526

Conread position: 153-784
Cow position: chr24:17036039-17035408 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-784
Cow position: chr24:17036123-17035492 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 292

Conread position: 153-784
Cow position: chr24:17036543-17035912 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 353

Conread position: 156-669
Cow position: chr24:17070549-17071062 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 157-782
Cow position: chr24:17078086-17077462 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 588, 0

Conread position: 164-512
Cow position: chr24:17013178-17013525 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 225
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 106, 125

Conread position: 165-392
Cow position: chr24:16986445-16986675 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 211, 0

Conread position: 165-780
Cow position: chr24:17035775-17035160 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 29

Conread position: 171-783
Cow position: chr24:17036606-17035997 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 19

Conread position: 174-785
Cow position: chr24:17078153-17077542 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 196

Conread position: 179-755
Cow position: chr24:17035508-17034934 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 10

Conread position: 179-779
Cow position: chr24:17036432-17035833 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 7

Conread position: 217-792
Cow position: chr24:17078278-17077703 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 153

Conread position: 235-596
Cow position: chr24:17013165-17013525 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 228
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 338, 0

Conread position: 249-476
Cow position: chr24:16986445-16986673 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 153
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 109, 116

Conread position: 249-784
Cow position: chr24:17036612-17036080 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 26

Conread position: 302-660
Cow position: chr24:17013148-17013506 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 167

Conread position: 321-531
Cow position: chr24:16986433-16986643 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 122, 127

Conread position: 338-775
Cow position: chr24:17013103-17013536 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 34

Conread position: 423-627
Cow position: chr24:16986451-16986655 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 119, 108

Conread position: 470-784
Cow position: chr24:17013148-17013462 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 501-704
Cow position: chr24:16986445-16986648 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 119, 97

Conread position: 553-783
Cow position: chr24:17013147-17013377 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 582-792
Cow position: chr24:17070387-17070597 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 16, 25

Show alignments to all cow chromosomes.