Cow genome map

Conread name: Ss1.1-reru03c_m20.5

Conread position: 19-776
Cow position:
Alignm length: 762
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 29-161
Cow position:
Alignm length: 133
Alignm identity: 99
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 132-733
Cow position:
Alignm length: 606
Alignm identity: 367
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 459, 24

Conread position: 137-764
Cow position:
Alignm length: 635
Alignm identity: 380
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 130, 23

Conread position: 138-783
Cow position:
Alignm length: 648
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 18

Conread position: 138-784
Cow position:
Alignm length: 650
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 18

Conread position: 138-784
Cow position:
Alignm length: 648
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 18

Conread position: 139-638
Cow position:
Alignm length: 504
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 13

Conread position: 139-769
Cow position:
Alignm length: 633
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 473, 17

Conread position: 139-769
Cow position:
Alignm length: 632
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 473, 17

Conread position: 139-770
Cow position:
Alignm length: 634
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 17

Conread position: 139-776
Cow position:
Alignm length: 640
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 17

Conread position: 139-777
Cow position:
Alignm length: 640
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 473, 17

Conread position: 139-783
Cow position:
Alignm length: 647
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 17

Conread position: 140-783
Cow position:
Alignm length: 648
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 16

Conread position: 144-408
Cow position:
Alignm length: 267
Alignm identity: 176
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 70, 12

Conread position: 144-646
Cow position:
Alignm length: 503
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 151-779
Cow position:
Alignm length: 634
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 151

Conread position: 152-354
Cow position:
Alignm length: 204
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 62, 7

Conread position: 152-605
Cow position:
Alignm length: 471
Alignm identity: 293
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 100, 208

Conread position: 152-661
Cow position:
Alignm length: 513
Alignm identity: 321
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 245, 79

Conread position: 152-779
Cow position:
Alignm length: 629
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 43

Conread position: 152-779
Cow position:
Alignm length: 629
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 153-411
Cow position:
Alignm length: 259
Alignm identity: 177
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 153-479
Cow position:
Alignm length: 328
Alignm identity: 213
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 112, 125

Conread position: 153-572
Cow position:
Alignm length: 420
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-621
Cow position:
Alignm length: 470
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 193

Conread position: 153-646
Cow position:
Alignm length: 497
Alignm identity: 302
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 112, 130

Conread position: 153-742
Cow position:
Alignm length: 591
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 553, 561

Conread position: 153-742
Cow position:
Alignm length: 590
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-758
Cow position:
Alignm length: 608
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 125

Conread position: 153-765
Cow position:
Alignm length: 615
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 96

Conread position: 153-769
Cow position:
Alignm length: 620
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 77

Conread position: 153-770
Cow position:
Alignm length: 620
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 53

Conread position: 153-774
Cow position:
Alignm length: 626
Alignm identity: 352
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 142

Conread position: 153-774
Cow position:
Alignm length: 623
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 130

Conread position: 153-775
Cow position:
Alignm length: 637
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 112

Conread position: 153-776
Cow position:
Alignm length: 631
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 45

Conread position: 153-777
Cow position:
Alignm length: 626
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 53

Conread position: 153-783
Cow position:
Alignm length: 631
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-783
Cow position:
Alignm length: 632
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 216

Conread position: 153-784
Cow position:
Alignm length: 632
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 153-784
Cow position:
Alignm length: 633
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 133

Conread position: 153-784
Cow position:
Alignm length: 632
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-789
Cow position:
Alignm length: 640
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 152

Conread position: 153-792
Cow position:
Alignm length: 644
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 116

Conread position: 156-441
Cow position:
Alignm length: 287
Alignm identity: 191
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 106, 128

Conread position: 156-562
Cow position:
Alignm length: 409
Alignm identity: 253
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 109, 122

Conread position: 156-775
Cow position:
Alignm length: 624
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 136

Conread position: 156-778
Cow position:
Alignm length: 625
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 49

Conread position: 156-779
Cow position:
Alignm length: 625
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 68

Conread position: 157-784
Cow position:
Alignm length: 639
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 114

Conread position: 158-776
Cow position:
Alignm length: 621
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 372

Conread position: 162-776
Cow position:
Alignm length: 621
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 96

Conread position: 164-649
Cow position:
Alignm length: 486
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 164-740
Cow position:
Alignm length: 579
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 176

Conread position: 168-730
Cow position:
Alignm length: 564
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 117

Conread position: 168-747
Cow position:
Alignm length: 581
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 18

Conread position: 171-784
Cow position:
Alignm length: 616
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 113

Conread position: 174-490
Cow position:
Alignm length: 320
Alignm identity: 210
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 23

Conread position: 174-647
Cow position:
Alignm length: 479
Alignm identity: 292
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 78, 68

Conread position: 174-779
Cow position:
Alignm length: 607
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 541, 523

Conread position: 174-784
Cow position:
Alignm length: 614
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 202

Conread position: 174-784
Cow position:
Alignm length: 612
Alignm identity: 350
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 88, 116

Conread position: 177-747
Cow position:
Alignm length: 574
Alignm identity: 328
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 9

Conread position: 178-775
Cow position:
Alignm length: 601
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 200-526
Cow position:
Alignm length: 332
Alignm identity: 220
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 78, 85

Conread position: 201-563
Cow position:
Alignm length: 369
Alignm identity: 229
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 85

Conread position: 201-767
Cow position:
Alignm length: 568
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 75

Conread position: 204-434
Cow position:
Alignm length: 231
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 205-779
Cow position:
Alignm length: 580
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 86

Conread position: 207-779
Cow position:
Alignm length: 574
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 59

Conread position: 211-776
Cow position:
Alignm length: 568
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 19

Conread position: 212-744
Cow position:
Alignm length: 542
Alignm identity: 336
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 174, 216

Conread position: 221-766
Cow position:
Alignm length: 547
Alignm identity: 322
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 57, 69

Conread position: 221-770
Cow position:
Alignm length: 552
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 148

Conread position: 225-769
Cow position:
Alignm length: 546
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 230

Conread position: 228-777
Cow position:
Alignm length: 554
Alignm identity: 324
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 38, 56

Conread position: 231-779
Cow position:
Alignm length: 551
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 166

Conread position: 233-525
Cow position:
Alignm length: 294
Alignm identity: 186
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 136, 25

Conread position: 233-730
Cow position:
Alignm length: 502
Alignm identity: 300
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 33, 43

Conread position: 278-614
Cow position:
Alignm length: 341
Alignm identity: 222
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 6, 0

Conread position: 292-730
Cow position:
Alignm length: 443
Alignm identity: 278
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 143, 155

Conread position: 296-784
Cow position:
Alignm length: 489
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 297-780
Cow position:
Alignm length: 485
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 416

Conread position: 302-784
Cow position:
Alignm length: 486
Alignm identity: 296
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 133, 137

Conread position: 308-602
Cow position:
Alignm length: 295
Alignm identity: 187
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 308-784
Cow position:
Alignm length: 477
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 309-783
Cow position:
Alignm length: 476
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 58

Conread position: 311-743
Cow position:
Alignm length: 435
Alignm identity: 263
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 40, 49

Conread position: 315-784
Cow position:
Alignm length: 470
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 315-784
Cow position:
Alignm length: 470
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 317-784
Cow position:
Alignm length: 472
Alignm identity: 285
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 64, 52

Conread position: 317-787
Cow position:
Alignm length: 473
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 40

Conread position: 318-647
Cow position:
Alignm length: 332
Alignm identity: 213
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 117, 129

Conread position: 318-766
Cow position:
Alignm length: 471
Alignm identity: 306
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 206, 324

Conread position: 318-784
Cow position:
Alignm length: 469
Alignm identity: 280
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 29, 37

Conread position: 333-776
Cow position:
Alignm length: 450
Alignm identity: 286
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 360, 105

Conread position: 342-776
Cow position:
Alignm length: 442
Alignm identity: 277
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 80, 60

Conread position: 361-731
Cow position:
Alignm length: 372
Alignm identity: 233
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 26

Conread position: 368-792
Cow position:
Alignm length: 427
Alignm identity: 273
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 136, 24

Conread position: 372-781
Cow position:
Alignm length: 412
Alignm identity: 267
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 277, 113

Conread position: 381-731
Cow position:
Alignm length: 352
Alignm identity: 214
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 207, 213

Conread position: 396-775
Cow position:
Alignm length: 383
Alignm identity: 237
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 48

Conread position: 399-792
Cow position:
Alignm length: 394
Alignm identity: 246
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 64, 0

Conread position: 403-776
Cow position:
Alignm length: 374
Alignm identity: 240
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 124, 0

Conread position: 423-748
Cow position:
Alignm length: 327
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 165, 171

Conread position: 424-686
Cow position:
Alignm length: 263
Alignm identity: 170
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 431-785
Cow position:
Alignm length: 356
Alignm identity: 235
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 342, 23

Conread position: 432-783
Cow position:
Alignm length: 354
Alignm identity: 230
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 213, 197

Conread position: 447-784
Cow position:
Alignm length: 339
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 38

Conread position: 448-782
Cow position:
Alignm length: 338
Alignm identity: 227
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 140, 0

Conread position: 465-781
Cow position:
Alignm length: 317
Alignm identity: 207
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 465-781
Cow position:
Alignm length: 317
Alignm identity: 209
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 470-690
Cow position:
Alignm length: 221
Alignm identity: 158
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 474-783
Cow position:
Alignm length: 311
Alignm identity: 209
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 99, 92

Conread position: 486-754
Cow position:
Alignm length: 269
Alignm identity: 178
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 486-774
Cow position:
Alignm length: 290
Alignm identity: 182
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 280, 22

Conread position: 486-775
Cow position:
Alignm length: 292
Alignm identity: 191
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 118, 138

Conread position: 504-778
Cow position:
Alignm length: 275
Alignm identity: 181
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 505-783
Cow position:
Alignm length: 281
Alignm identity: 178
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 168, 172

Conread position: 510-778
Cow position:
Alignm length: 270
Alignm identity: 185
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 93, 12

Conread position: 510-784
Cow position:
Alignm length: 275
Alignm identity: 183
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 12, 0

Conread position: 553-770
Cow position:
Alignm length: 218
Alignm identity: 155
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 571-784
Cow position:
Alignm length: 215
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 195, 208

Conread position: 586-784
Cow position:
Alignm length: 200
Alignm identity: 138
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 13, 20

Show alignments to all cow chromosomes.