Cow genome map
| Conread name: | Ss1.1-reru03c_m20.5 |
| Conread position: | 128-777 |
| Cow position: | chr28:9252999-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 617, 12 |
| Conread position: | 137-770 |
| Cow position: | chr28:9298555-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 138-672 |
| Cow position: | chr28:7810421-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 18 |
| Conread position: | 138-781 |
| Cow position: | chr28:7757489-7758131 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 138-783 |
| Cow position: | chr28:9298723-9299350 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 18 |
| Conread position: | 139-789 |
| Cow position: | chr28:7758078-7758712 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 627, 17 |
| Conread position: | 144-457 |
| Cow position: | chr28:9290414-9290724 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 219, 15 |
| Conread position: | 145-648 |
| Cow position: | chr28:7758404-7758906 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 435, 7 |
| Conread position: | 147-783 |
| Cow position: | chr28:7757251-7757881 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 149-615 |
| Cow position: | chr28:34673437-34673904 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 5, 149 |
| Conread position: | 152-531 |
| Cow position: | chr28:33210230-33210610 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 116, 138 |
| Conread position: | 152-642 |
| Cow position: | chr28:9299224-9299710 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 152-730 |
| Cow position: | chr28:7757754-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 460 |
| Conread position: | 152-757 |
| Cow position: | chr28:7810351-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 7 |
| Conread position: | 152-784 |
| Cow position: | chr28:9252937-9253569 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 152-784 |
| Cow position: | chr28:34695914-34696546 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 153-564 |
| Cow position: | chr28:34679473-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 123, 89 |
| Conread position: | 153-710 |
| Cow position: | chr28:34695999-34696556 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 343 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 153-734 |
| Cow position: | chr28:11334050-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 153-770 |
| Cow position: | chr28:7757587-7758204 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-775 |
| Cow position: | chr28:7757419-7758042 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 613, 0 |
| Conread position: | 153-775 |
| Cow position: | chr28:11334134-11333511 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 153-776 |
| Cow position: | chr28:7757335-7757958 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-777 |
| Cow position: | chr28:7758259-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 592, 77 |
| Conread position: | 153-778 |
| Cow position: | chr28:9289921-9290542 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 30 |
| Conread position: | 153-782 |
| Cow position: | chr28:9290091-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 134 |
| Conread position: | 153-783 |
| Cow position: | chr28:7757671-7758301 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 130 |
| Conread position: | 153-784 |
| Cow position: | chr28:11333882-11333251 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 155-792 |
| Cow position: | chr28:9252774-9253409 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 121 |
| Conread position: | 156-776 |
| Cow position: | chr28:9298823-9299427 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 171 |
| Conread position: | 157-714 |
| Cow position: | chr28:34673362-34673919 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 130 |
| Conread position: | 163-648 |
| Cow position: | chr28:34679547-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 153 |
| Conread position: | 171-791 |
| Cow position: | chr28:7810285-7810897 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 172-774 |
| Cow position: | chr28:9289780-9290373 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 7 |
| Conread position: | 172-781 |
| Cow position: | chr28:7757024-7757627 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 123 |
| Conread position: | 202-765 |
| Cow position: | chr28:11333917-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 203-783 |
| Cow position: | chr28:9252903-9253484 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 80 |
| Conread position: | 203-792 |
| Cow position: | chr28:11334168-11333579 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 74 |
| Conread position: | 206-792 |
| Cow position: | chr28:7756977-7757554 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 369 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 73, 36 |
| Conread position: | 207-783 |
| Cow position: | chr28:9298208-9298779 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 209-771 |
| Cow position: | chr28:11334246-11333683 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 214-792 |
| Cow position: | chr28:34695724-34696302 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 353 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 166, 157 |
| Conread position: | 215-784 |
| Cow position: | chr28:34695809-34696378 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 344 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 223-774 |
| Cow position: | chr28:9298556-9299104 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 228-783 |
| Cow position: | chr28:7757164-7757713 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 148 |
| Conread position: | 230-770 |
| Cow position: | chr28:9299217-9299750 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 428, 353 |
| Conread position: | 234-625 |
| Cow position: | chr28:33210228-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 240-789 |
| Cow position: | chr28:9252526-9253071 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 410, 214 |
| Conread position: | 289-779 |
| Cow position: | chr28:11334250-11333760 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 226, 264 |
| Conread position: | 300-783 |
| Cow position: | chr28:34679578-34679103 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 191 |
| Conread position: | 301-746 |
| Cow position: | chr28:33210211-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 284 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 68, 76 |
| Conread position: | 325-777 |
| Cow position: | chr28:34673362-34673815 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 337-783 |
| Cow position: | chr28:7810283-7810720 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 191 |
| Conread position: | 372-789 |
| Cow position: | chr28:11334254-11333833 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 7, 244 |
| Conread position: | 373-755 |
| Cow position: | chr28:9289727-9290105 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 264, 154 |
| Conread position: | 375-792 |
| Cow position: | chr28:9298208-9298622 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 337, 33 |
| Conread position: | 381-778 |
| Cow position: | chr28:34679579-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 34 |
| Conread position: | 409-783 |
| Cow position: | chr28:34673362-34673736 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 206 |
| Conread position: | 450-764 |
| Cow position: | chr28:9289720-9290027 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 471-776 |
| Cow position: | chr28:7809817-7810116 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 485-784 |
| Cow position: | chr28:33210227-33210526 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 116, 126 |
| Conread position: | 487-774 |
| Cow position: | chr28:34673356-34673644 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 113, 135 |
| Conread position: | 547-779 |
| Cow position: | chr28:7810250-7810473 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.