Cow genome map
| Conread name: | Ss1.1-reru03c_m20.5 |
| Conread position: | 53-366 |
| Cow position: | chr3:16020562-16020247 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 139-784 |
| Cow position: | chr3:62742352-62742992 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 147-731 |
| Cow position: | chr3:62742942-62743505 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 152-466 |
| Cow position: | chr3:68046023-68046337 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 152-575 |
| Cow position: | chr3:62721987-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 152-602 |
| Cow position: | chr3:77350911-77350473 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 13, 132 |
| Conread position: | 152-650 |
| Cow position: | chr3:62722071-62721573 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 152-770 |
| Cow position: | chr3:77351236-77350631 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 8 |
| Conread position: | 152-781 |
| Cow position: | chr3:68045603-68046232 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 152-784 |
| Cow position: | chr3:62722239-62721607 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 153-657 |
| Cow position: | chr3:68045856-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 153-657 |
| Cow position: | chr3:77351070-77350576 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 153-661 |
| Cow position: | chr3:68027263-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 153-694 |
| Cow position: | chr3:68027179-68027720 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 125 |
| Conread position: | 153-730 |
| Cow position: | chr3:68045772-68046349 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 137 |
| Conread position: | 153-743 |
| Cow position: | chr3:62722154-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-781 |
| Cow position: | chr3:62742864-62743471 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 41 |
| Conread position: | 153-784 |
| Cow position: | chr3:62722322-62721691 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 156-789 |
| Cow position: | chr3:62742783-62743394 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 215 |
| Conread position: | 158-781 |
| Cow position: | chr3:68027016-68027639 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 328 |
| Conread position: | 158-789 |
| Cow position: | chr3:62742538-62743144 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 103 |
| Conread position: | 161-745 |
| Cow position: | chr3:62742457-62743032 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 69 |
| Conread position: | 164-778 |
| Cow position: | chr3:68027106-68027720 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 164-778 |
| Cow position: | chr3:68045699-68046313 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 208 |
| Conread position: | 172-778 |
| Cow position: | chr3:77351302-77350704 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 133 |
| Conread position: | 172-780 |
| Cow position: | chr3:62722387-62721779 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 176-595 |
| Cow position: | chr3:62743118-62743534 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 182, 193 |
| Conread position: | 198-775 |
| Cow position: | chr3:62742243-62742814 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 88 |
| Conread position: | 202-784 |
| Cow position: | chr3:68045569-68046151 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 223-523 |
| Cow position: | chr3:16020467-16020178 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 46 |
| Conread position: | 282-785 |
| Cow position: | chr3:68045565-68046068 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 248 |
| Conread position: | 296-785 |
| Cow position: | chr3:68027070-68027559 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 303-784 |
| Cow position: | chr3:68026993-68027474 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 328-779 |
| Cow position: | chr3:62742123-62742571 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 104, 74 |
| Conread position: | 372-775 |
| Cow position: | chr3:68026978-68027381 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 64 |
| Conread position: | 476-782 |
| Cow position: | chr3:16020466-16020171 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 297, 51 |
| Conread position: | 531-781 |
| Cow position: | chr3:68045562-68045812 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 538-781 |
| Cow position: | chr3:68026976-68027219 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 543-784 |
| Cow position: | chr3:62722352-62722111 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 12 |
Show alignments to all cow chromosomes.