Cow genome map
| Conread name: | Ss1.1-reru03c_m20.5 |
| Conread position: | 129-775 |
| Cow position: | chr7:8325050-8325694 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 129-779 |
| Cow position: | chr7:8242864-8243511 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 131-756 |
| Cow position: | chr7:1014837-1015460 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 131-770 |
| Cow position: | chr7:8277410-8278048 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 137-791 |
| Cow position: | chr7:42879372-42878718 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 138-776 |
| Cow position: | chr7:3180190-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 18 |
| Conread position: | 138-778 |
| Cow position: | chr7:8277921-8278558 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 18 |
| Conread position: | 138-784 |
| Cow position: | chr7:1014760-1015405 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 138-784 |
| Cow position: | chr7:3180106-3180751 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 138-791 |
| Cow position: | chr7:42878951-42878298 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 18 |
| Conread position: | 141-777 |
| Cow position: | chr7:1014265-1014894 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 19 |
| Conread position: | 148-775 |
| Cow position: | chr7:11601188-11600562 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 151-783 |
| Cow position: | chr7:42879443-42878811 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 97 |
| Conread position: | 152-609 |
| Cow position: | chr7:8243640-8244094 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 132 |
| Conread position: | 152-651 |
| Cow position: | chr7:18390332-18390831 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 152-654 |
| Cow position: | chr7:11600933-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 130 |
| Conread position: | 152-711 |
| Cow position: | chr7:1438169-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 342 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 284, 32 |
| Conread position: | 152-775 |
| Cow position: | chr7:1439638-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 135 |
| Conread position: | 152-776 |
| Cow position: | chr7:8324820-8325443 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 7 |
| Conread position: | 152-777 |
| Cow position: | chr7:11601101-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 152-778 |
| Cow position: | chr7:8277766-8278392 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 132 |
| Conread position: | 152-781 |
| Cow position: | chr7:11434884-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 39 |
| Conread position: | 152-783 |
| Cow position: | chr7:42879022-42878391 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 292 |
| Conread position: | 152-783 |
| Cow position: | chr7:42879190-42878559 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 460 |
| Conread position: | 152-784 |
| Cow position: | chr7:3180035-3180667 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-659 |
| Cow position: | chr7:42878769-42878263 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-694 |
| Cow position: | chr7:8278187-8278719 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 330 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 153-732 |
| Cow position: | chr7:11601016-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 149 |
| Conread position: | 153-732 |
| Cow position: | chr7:42878853-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-769 |
| Cow position: | chr7:8278019-8278627 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 153-772 |
| Cow position: | chr7:8277683-8278302 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 41 |
| Conread position: | 153-776 |
| Cow position: | chr7:3179784-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 153-777 |
| Cow position: | chr7:8277263-8277887 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 36 |
| Conread position: | 153-777 |
| Cow position: | chr7:8325492-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 153-779 |
| Cow position: | chr7:3179868-3180494 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-779 |
| Cow position: | chr7:8324736-8325362 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 117 |
| Conread position: | 153-780 |
| Cow position: | chr7:8325408-8326035 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 208 |
| Conread position: | 153-781 |
| Cow position: | chr7:8277599-8278227 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 374 |
| Conread position: | 153-781 |
| Cow position: | chr7:42879105-42878477 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 378 |
| Conread position: | 153-784 |
| Cow position: | chr7:18390165-18390796 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 213 |
| Conread position: | 156-695 |
| Cow position: | chr7:8243560-8244096 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 156-779 |
| Cow position: | chr7:8242805-8243427 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 156-779 |
| Cow position: | chr7:8243392-8244013 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 37 |
| Conread position: | 156-779 |
| Cow position: | chr7:8325243-8325866 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 38 |
| Conread position: | 156-784 |
| Cow position: | chr7:3179955-3180583 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 114 |
| Conread position: | 156-784 |
| Cow position: | chr7:18390000-18390628 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 122 |
| Conread position: | 157-776 |
| Cow position: | chr7:42879269-42878650 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 137 |
| Conread position: | 157-784 |
| Cow position: | chr7:1014694-1015321 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 127 |
| Conread position: | 159-620 |
| Cow position: | chr7:1439817-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 163-779 |
| Cow position: | chr7:1014370-1014980 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 194 |
| Conread position: | 164-775 |
| Cow position: | chr7:8242981-8243592 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 194 |
| Conread position: | 171-775 |
| Cow position: | chr7:1438023-1438622 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 367 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 66, 19 |
| Conread position: | 178-784 |
| Cow position: | chr7:1014217-1014817 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 516, 428 |
| Conread position: | 204-784 |
| Cow position: | chr7:3179751-3180331 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 412 |
| Conread position: | 213-498 |
| Cow position: | chr7:11434508-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 213-778 |
| Cow position: | chr7:11601208-11600643 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 217-775 |
| Cow position: | chr7:1439453-1440011 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 135 |
| Conread position: | 217-784 |
| Cow position: | chr7:1014670-1015237 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 221-784 |
| Cow position: | chr7:18390149-18390712 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 230-778 |
| Cow position: | chr7:8277256-8277804 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 235-779 |
| Cow position: | chr7:18389995-18390539 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 239-779 |
| Cow position: | chr7:8242804-8243344 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 114 |
| Conread position: | 296-775 |
| Cow position: | chr7:3179675-3180154 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 12 |
| Conread position: | 302-784 |
| Cow position: | chr7:11601203-11600721 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 65 |
| Conread position: | 315-779 |
| Cow position: | chr7:8277257-8277721 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 319-784 |
| Cow position: | chr7:18389995-18390460 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 320-775 |
| Cow position: | chr7:8324735-8325190 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 417-782 |
| Cow position: | chr7:3179712-3180077 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 113 |
| Conread position: | 422-764 |
| Cow position: | chr7:11601250-11600909 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 23 |
| Conread position: | 430-775 |
| Cow position: | chr7:1439410-1439762 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 184 |
| Conread position: | 478-784 |
| Cow position: | chr7:18389986-18390292 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 137, 147 |
| Conread position: | 487-784 |
| Cow position: | chr7:1014108-1014403 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 116, 16 |
| Conread position: | 538-777 |
| Cow position: | chr7:11601217-11600980 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 164, 6 |
| Conread position: | 547-784 |
| Cow position: | chr7:1439447-1439682 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 567-778 |
| Cow position: | chr7:11601275-11601063 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 571-787 |
| Cow position: | chr7:18389995-18390211 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 128, 138 |
| Conread position: | 578-779 |
| Cow position: | chr7:3179705-3179906 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 176, 172 |
Show alignments to all cow chromosomes.