Cow genome map
| Conread name: | Ss1.1-reru03c_m20.5 |
| Conread position: | 25-156 |
| Cow position: | chr8:46816304-46816435 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-162 |
| Cow position: | chr8:46816144-46816273 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-781 |
| Cow position: | chr8:55580718-55581369 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 138-659 |
| Cow position: | chr8:55581231-55581751 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 18 |
| Conread position: | 138-735 |
| Cow position: | chr8:46816790-46817386 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 477, 18 |
| Conread position: | 138-775 |
| Cow position: | chr8:46816706-46817343 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 628, 18 |
| Conread position: | 138-777 |
| Cow position: | chr8:46816118-46816756 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 18 |
| Conread position: | 138-779 |
| Cow position: | chr8:48407305-48406665 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 22 |
| Conread position: | 138-783 |
| Cow position: | chr8:46816454-46817098 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 18 |
| Conread position: | 138-789 |
| Cow position: | chr8:46816202-46816853 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 18 |
| Conread position: | 139-783 |
| Cow position: | chr8:45201092-45201735 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 139-792 |
| Cow position: | chr8:45201176-45201828 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 143-784 |
| Cow position: | chr8:48407636-48406996 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 17 |
| Conread position: | 144-778 |
| Cow position: | chr8:45201347-45201982 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 147-597 |
| Cow position: | chr8:48406709-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 285 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 226, 217 |
| Conread position: | 152-744 |
| Cow position: | chr8:45201608-45202191 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 462, 392 |
| Conread position: | 152-776 |
| Cow position: | chr8:46816635-46817259 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 602, 598 |
| Conread position: | 152-777 |
| Cow position: | chr8:55581076-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 527, 522 |
| Conread position: | 152-791 |
| Cow position: | chr8:46815963-46816603 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 215 |
| Conread position: | 153-563 |
| Cow position: | chr8:6957993-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 276, 211 |
| Conread position: | 153-656 |
| Cow position: | chr8:46816888-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-761 |
| Cow position: | chr8:45201441-45202042 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 561, 0 |
| Conread position: | 153-776 |
| Cow position: | chr8:46816048-46816671 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 153-780 |
| Cow position: | chr8:46816300-46816927 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 214 |
| Conread position: | 153-784 |
| Cow position: | chr8:48407207-48406576 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 153-784 |
| Cow position: | chr8:55580909-55581540 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-784 |
| Cow position: | chr8:55580993-55581624 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 153-789 |
| Cow position: | chr8:45200937-45201574 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 214 |
| Conread position: | 153-789 |
| Cow position: | chr8:45201021-45201658 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 634, 0 |
| Conread position: | 156-749 |
| Cow position: | chr8:48407372-48406779 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 211 |
| Conread position: | 156-775 |
| Cow position: | chr8:46816387-46817006 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-779 |
| Cow position: | chr8:48407456-48406833 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 141 |
| Conread position: | 156-781 |
| Cow position: | chr8:48407120-48406495 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 156-782 |
| Cow position: | chr8:48406952-48406326 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 221 |
| Conread position: | 156-792 |
| Cow position: | chr8:45201276-45201912 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-791 |
| Cow position: | chr8:45200857-45201492 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 294 |
| Conread position: | 158-777 |
| Cow position: | chr8:46815882-46816504 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 159-791 |
| Cow position: | chr8:46816558-46817191 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 625, 0 |
| Conread position: | 163-776 |
| Cow position: | chr8:55580835-55581448 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 163-781 |
| Cow position: | chr8:48407533-48406915 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 363 |
| Conread position: | 165-783 |
| Cow position: | chr8:48407027-48406409 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 171-647 |
| Cow position: | chr8:6958059-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 296 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 270, 284 |
| Conread position: | 171-777 |
| Cow position: | chr8:45200787-45201393 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 93 |
| Conread position: | 177-781 |
| Cow position: | chr8:45200718-45201313 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 180-658 |
| Cow position: | chr8:48406759-48406280 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 23 |
| Conread position: | 213-784 |
| Cow position: | chr8:46815850-46816427 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 234-783 |
| Cow position: | chr8:55580737-55581287 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 255-731 |
| Cow position: | chr8:6958059-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 272 |
| Conread position: | 318-784 |
| Cow position: | chr8:55580737-55581204 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 97 |
| Conread position: | 340-770 |
| Cow position: | chr8:6958058-6957629 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 282 |
| Conread position: | 375-779 |
| Cow position: | chr8:48407657-48407253 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 57 |
| Conread position: | 422-787 |
| Cow position: | chr8:45200786-45201152 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 423-775 |
| Cow position: | chr8:6958059-6957707 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 283 |
| Conread position: | 467-792 |
| Cow position: | chr8:48407649-48407324 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 207 |
| Conread position: | 507-775 |
| Cow position: | chr8:6958059-6957791 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 542-784 |
| Cow position: | chr8:48407658-48407416 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 672-784 |
| Cow position: | chr8:6958062-6957950 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.