Cow genome map

Conread name: Ss1.1-reru03c_m20.5

Conread position: 25-156
Cow position:
Alignm length: 132
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-162
Cow position:
Alignm length: 130
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 131-781
Cow position:
Alignm length: 656
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 65

Conread position: 138-659
Cow position:
Alignm length: 523
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 18

Conread position: 138-735
Cow position:
Alignm length: 599
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 477, 18

Conread position: 138-775
Cow position:
Alignm length: 639
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 628, 18

Conread position: 138-777
Cow position:
Alignm length: 641
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 18

Conread position: 138-779
Cow position:
Alignm length: 646
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 22

Conread position: 138-783
Cow position:
Alignm length: 648
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 18

Conread position: 138-789
Cow position:
Alignm length: 654
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 18

Conread position: 139-783
Cow position:
Alignm length: 647
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 17

Conread position: 139-792
Cow position:
Alignm length: 654
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 143-784
Cow position:
Alignm length: 644
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 17

Conread position: 144-778
Cow position:
Alignm length: 636
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 147-597
Cow position:
Alignm length: 453
Alignm identity: 285
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 226, 217

Conread position: 152-744
Cow position:
Alignm length: 596
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 462, 392

Conread position: 152-776
Cow position:
Alignm length: 626
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 602, 598

Conread position: 152-777
Cow position:
Alignm length: 627
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 527, 522

Conread position: 152-791
Cow position:
Alignm length: 642
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 215

Conread position: 153-563
Cow position:
Alignm length: 413
Alignm identity: 249
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 276, 211

Conread position: 153-656
Cow position:
Alignm length: 504
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-761
Cow position:
Alignm length: 609
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 561, 0

Conread position: 153-776
Cow position:
Alignm length: 627
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 52

Conread position: 153-780
Cow position:
Alignm length: 629
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 214

Conread position: 153-784
Cow position:
Alignm length: 637
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 37

Conread position: 153-784
Cow position:
Alignm length: 632
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-784
Cow position:
Alignm length: 634
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 42

Conread position: 153-789
Cow position:
Alignm length: 639
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 214

Conread position: 153-789
Cow position:
Alignm length: 638
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 634, 0

Conread position: 156-749
Cow position:
Alignm length: 596
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 211

Conread position: 156-775
Cow position:
Alignm length: 620
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 156-779
Cow position:
Alignm length: 627
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 141

Conread position: 156-781
Cow position:
Alignm length: 628
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 156-782
Cow position:
Alignm length: 631
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 221

Conread position: 156-792
Cow position:
Alignm length: 637
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 157-791
Cow position:
Alignm length: 637
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 294

Conread position: 158-777
Cow position:
Alignm length: 625
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 50

Conread position: 159-791
Cow position:
Alignm length: 634
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 625, 0

Conread position: 163-776
Cow position:
Alignm length: 617
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 42

Conread position: 163-781
Cow position:
Alignm length: 621
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 363

Conread position: 165-783
Cow position:
Alignm length: 623
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 32

Conread position: 171-647
Cow position:
Alignm length: 478
Alignm identity: 296
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 270, 284

Conread position: 171-777
Cow position:
Alignm length: 609
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 93

Conread position: 177-781
Cow position:
Alignm length: 605
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 180-658
Cow position:
Alignm length: 482
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 23

Conread position: 213-784
Cow position:
Alignm length: 580
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 87

Conread position: 234-783
Cow position:
Alignm length: 554
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 45

Conread position: 255-731
Cow position:
Alignm length: 479
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 410, 272

Conread position: 318-784
Cow position:
Alignm length: 469
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 97

Conread position: 340-770
Cow position:
Alignm length: 436
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 282

Conread position: 375-779
Cow position:
Alignm length: 406
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 57

Conread position: 422-787
Cow position:
Alignm length: 368
Alignm identity: 240
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 19, 10

Conread position: 423-775
Cow position:
Alignm length: 355
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 283

Conread position: 467-792
Cow position:
Alignm length: 328
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 207

Conread position: 507-775
Cow position:
Alignm length: 269
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 542-784
Cow position:
Alignm length: 243
Alignm identity: 164
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 672-784
Cow position:
Alignm length: 113
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.