Cow genome map
| Conread name: | Ss1.1-reru03c_m20.5 |
| Conread position: | 25-156 |
| Cow position: | chrX:29044917-29044786 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 138-777 |
| Cow position: | chrX:25325094-25324456 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 18 |
| Conread position: | 138-783 |
| Cow position: | chrX:25325766-25325122 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 18 |
| Conread position: | 138-784 |
| Cow position: | chrX:25325178-25324533 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 616, 18 |
| Conread position: | 138-791 |
| Cow position: | chrX:25325262-25324609 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 646, 18 |
| Conread position: | 138-791 |
| Cow position: | chrX:25325430-25324777 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 649, 18 |
| Conread position: | 139-756 |
| Cow position: | chrX:29045270-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 139-775 |
| Cow position: | chrX:12627429-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 139-778 |
| Cow position: | chrX:29045837-29045220 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 22 |
| Conread position: | 145-784 |
| Cow position: | chrX:14181647-14181008 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 370 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 164, 141 |
| Conread position: | 151-783 |
| Cow position: | chrX:25325838-25325206 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 41 |
| Conread position: | 152-421 |
| Cow position: | chrX:25310312-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 209, 229 |
| Conread position: | 152-660 |
| Cow position: | chrX:25324745-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 130 |
| Conread position: | 152-789 |
| Cow position: | chrX:25325668-25325031 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 8 |
| Conread position: | 153-595 |
| Cow position: | chrX:25310145-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 134 |
| Conread position: | 153-776 |
| Cow position: | chrX:12627358-12627979 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 37 |
| Conread position: | 153-776 |
| Cow position: | chrX:13826861-13826238 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 367 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 153-777 |
| Cow position: | chrX:25325332-25324708 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 153-777 |
| Cow position: | chrX:25325500-25324876 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-783 |
| Cow position: | chrX:29045656-29045047 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 129 |
| Conread position: | 153-789 |
| Cow position: | chrX:25324912-25324275 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 130 |
| Conread position: | 153-789 |
| Cow position: | chrX:25325584-25324947 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 630, 0 |
| Conread position: | 153-791 |
| Cow position: | chrX:25324996-25324357 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 129 |
| Conread position: | 153-792 |
| Cow position: | chrX:25309893-25310531 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 213 |
| Conread position: | 156-554 |
| Cow position: | chrX:12627695-12628093 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 156-692 |
| Cow position: | chrX:12627528-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 331 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 225, 139 |
| Conread position: | 156-763 |
| Cow position: | chrX:25309980-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 299 |
| Conread position: | 156-776 |
| Cow position: | chrX:25309812-25310432 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 158-744 |
| Cow position: | chrX:25324823-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-779 |
| Cow position: | chrX:25309730-25310351 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 194 |
| Conread position: | 161-779 |
| Cow position: | chrX:29045333-29044715 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 210 |
| Conread position: | 165-792 |
| Cow position: | chrX:13826933-13826306 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 371 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 271, 284 |
| Conread position: | 180-778 |
| Cow position: | chrX:25309668-25310266 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 205-777 |
| Cow position: | chrX:25325868-25325296 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 215-634 |
| Cow position: | chrX:29045846-29045427 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 396 |
| Conread position: | 243-691 |
| Cow position: | chrX:12627280-12627726 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 323-792 |
| Cow position: | chrX:25326002-25325533 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 300 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 339-775 |
| Cow position: | chrX:25309659-25310095 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 464-775 |
| Cow position: | chrX:12627333-12627643 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 486-783 |
| Cow position: | chrX:29045827-29045530 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 539-777 |
| Cow position: | chrX:12627324-12627561 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 73 |
| Conread position: | 555-783 |
| Cow position: | chrX:29045842-29045614 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 592-792 |
| Cow position: | chrX:25309660-25309860 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.