Cow genome map

Conread name: Ss1.1-reru07c_p16.5

Conread position: 111-375
Cow position: chrX:44123557-44123302 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 129-378
Cow position: chrX:20677654-20677410 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 166
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 25

Conread position: 146-378
Cow position: chrX:8869132-8869358 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 25

Conread position: 151-360
Cow position: chrX:16770337-16770126 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 65

Conread position: 151-375
Cow position: chrX:34441185-34441407 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 107, 42

Conread position: 153-352
Cow position: chrX:5063502-5063315 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 154-376
Cow position: chrX:43150691-43150477 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 162-377
Cow position: chrX:18439252-18439041 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 143
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 9, 0

Conread position: 162-378
Cow position: chrX:42894182-42893970 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 13, 53

Conread position: 164-348
Cow position: chrX:42506691-42506875 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 125, 29

Conread position: 167-348
Cow position: chrX:26720438-26720608 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 168-378
Cow position: chrX:14951102-14951309 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 168-378
Cow position: chrX:29601575-29601784 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 23, 13

Conread position: 168-381
Cow position: chrX:17956936-17956732 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 169-378
Cow position: chrX:31948685-31948891 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 170-326
Cow position: chrX:41194155-41194001 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 170-369
Cow position: chrX:11529590-11529395 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 45

Conread position: 170-378
Cow position: chrX:8642298-8642090 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 46

Conread position: 171-346
Cow position: chrX:30958981-30958806 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 46

Conread position: 171-353
Cow position: chrX:4268819-4268995 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 44

Conread position: 171-354
Cow position: chrX:41435294-41435481 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 10

Conread position: 171-370
Cow position: chrX:4169781-4169979 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 11

Conread position: 171-371
Cow position: chrX:1101799-1101608 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 12

Conread position: 171-373
Cow position: chrX:41011139-41010947 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 171-378
Cow position: chrX:2314372-2314575 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 12, 0

Conread position: 171-378
Cow position: chrX:8493315-8493110 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 171-378
Cow position: chrX:11843988-11844197 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 22

Conread position: 171-378
Cow position: chrX:15545014-15545219 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 171-378
Cow position: chrX:17949244-17949449 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 171-378
Cow position: chrX:20887402-20887597 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 124, 22

Conread position: 172-306
Cow position: chrX:23185089-23185222 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 172-315
Cow position: chrX:783693-783551 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 172-350
Cow position: chrX:34193832-34194009 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 41, 0

Conread position: 172-354
Cow position: chrX:1938260-1938082 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 172-354
Cow position: chrX:33466870-33466692 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 83, 41

Conread position: 172-359
Cow position: chrX:41199469-41199287 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 21

Conread position: 172-369
Cow position: chrX:48071408-48071214 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 135
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 172-370
Cow position: chrX:21642233-21642430 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 132
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 41, 0

Conread position: 172-376
Cow position: chrX:41027406-41027205 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 8, 0

Conread position: 172-376
Cow position: chrX:41238115-41238308 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 172-377
Cow position: chrX:32420456-32420257 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 172-377
Cow position: chrX:40320655-40320451 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 138
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 24, 31

Conread position: 172-378
Cow position: chrX:3580195-3579988 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 43

Conread position: 172-378
Cow position: chrX:3606127-3605924 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 172-378
Cow position: chrX:4327933-4328139 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 128

Conread position: 172-378
Cow position: chrX:7179131-7178940 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 172-378
Cow position: chrX:15546128-15545926 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 172-378
Cow position: chrX:19717761-19717565 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 43

Conread position: 172-378
Cow position: chrX:25049034-25049238 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 137
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 21, 0

Conread position: 172-378
Cow position: chrX:27446928-27446730 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 172-378
Cow position: chrX:27460115-27459909 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 25

Conread position: 172-378
Cow position: chrX:27668712-27668914 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 43

Conread position: 172-378
Cow position: chrX:28068102-28067894 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 14, 44

Conread position: 172-380
Cow position: chrX:4512493-4512287 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 11

Conread position: 172-381
Cow position: chrX:44225485-44225690 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 173-354
Cow position: chrX:17524139-17524316 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 173-359
Cow position: chrX:31489766-31489583 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 173-377
Cow position: chrX:34540931-34540726 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 39

Conread position: 173-378
Cow position: chrX:27270615-27270419 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 154, 13

Conread position: 173-378
Cow position: chrX:33020684-33020481 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 173-378
Cow position: chrX:42050023-42050226 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 174-352
Cow position: chrX:41941868-41941693 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 13, 0

Conread position: 174-354
Cow position: chrX:9451589-9451413 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 41

Conread position: 174-378
Cow position: chrX:16763684-16763881 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 0

Conread position: 175-354
Cow position: chrX:35392057-35392230 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 45

Conread position: 176-352
Cow position: chrX:19000370-19000196 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 176-359
Cow position: chrX:31729681-31729505 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 176-370
Cow position: chrX:17293202-17293007 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 39

Conread position: 176-376
Cow position: chrX:10415008-10415207 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 176-377
Cow position: chrX:876602-876797 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 18, 38

Conread position: 176-378
Cow position: chrX:31480210-31480015 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 126, 37

Conread position: 176-378
Cow position: chrX:34412093-34411890 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 38

Conread position: 176-378
Cow position: chrX:35409995-35409796 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 17, 0

Conread position: 176-380
Cow position: chrX:23335733-23335930 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 177-341
Cow position: chrX:36356347-36356187 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 177-378
Cow position: chrX:6407784-6407588 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 22, 0

Conread position: 178-378
Cow position: chrX:38964337-38964152 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 181-359
Cow position: chrX:27261429-27261255 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 144
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 0

Conread position: 181-378
Cow position: chrX:9201780-9201592 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 6

Conread position: 181-378
Cow position: chrX:23358875-23359067 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 35

Conread position: 181-378
Cow position: chrX:26493246-26493050 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 30, 0

Conread position: 182-307
Cow position: chrX:19161891-19162016 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 32

Conread position: 182-368
Cow position: chrX:5915430-5915242 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 14, 36

Conread position: 183-304
Cow position: chrX:32590168-32590288 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 183-312
Cow position: chrX:16532747-16532617 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 128

Conread position: 183-315
Cow position: chrX:42220462-42220595 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 32

Conread position: 183-341
Cow position: chrX:42515894-42516049 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 183-343
Cow position: chrX:37844237-37844074 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 19

Conread position: 183-347
Cow position: chrX:13924098-13923939 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 183-371
Cow position: chrX:39290594-39290410 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 32

Conread position: 183-377
Cow position: chrX:24335838-24336032 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 29

Conread position: 183-378
Cow position: chrX:4092159-4091968 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 30, 0

Conread position: 183-378
Cow position: chrX:11454411-11454230 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 183-378
Cow position: chrX:20168792-20168602 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 183-378
Cow position: chrX:25035145-25035338 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 183-378
Cow position: chrX:26843029-26843225 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 80, 30

Conread position: 183-378
Cow position: chrX:28013203-28013398 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 94, 30

Conread position: 183-378
Cow position: chrX:35285412-35285217 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 13, 31

Conread position: 184-369
Cow position: chrX:44201809-44201993 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 184-378
Cow position: chrX:11633918-11633726 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 184-378
Cow position: chrX:40680850-40680658 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 185-329
Cow position: chrX:26367467-26367610 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 105
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 28, 0

Conread position: 186-359
Cow position: chrX:38577878-38577708 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 103, 27

Conread position: 186-360
Cow position: chrX:4602704-4602876 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 187-325
Cow position: chrX:42159174-42159038 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 187-333
Cow position: chrX:39886979-39887125 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 102, 26

Conread position: 187-347
Cow position: chrX:22284071-22283912 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 119, 6

Conread position: 187-351
Cow position: chrX:6480361-6480525 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 17, 27

Conread position: 187-352
Cow position: chrX:33678237-33678403 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 103, 26

Conread position: 187-360
Cow position: chrX:28107079-28106909 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 187-360
Cow position: chrX:36391954-36392123 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 27

Conread position: 187-378
Cow position: chrX:22115080-22115273 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 133
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 10, 26

Conread position: 187-378
Cow position: chrX:27416328-27416137 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 88, 24

Conread position: 187-378
Cow position: chrX:27508792-27508978 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 96, 9

Conread position: 187-378
Cow position: chrX:36921909-36922098 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 104, 10

Conread position: 187-378
Cow position: chrX:42836411-42836225 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 12, 0

Conread position: 187-378
Cow position: chrX:46532258-46532451 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 9

Conread position: 187-378
Cow position: chrX:48558979-48558790 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 187-380
Cow position: chrX:25845839-25846031 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 132
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 9, 27

Conread position: 187-380
Cow position: chrX:34554957-34554765 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 188-347
Cow position: chrX:3543096-3542931 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 5

Conread position: 188-354
Cow position: chrX:4559966-4559801 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 25, 0

Conread position: 188-378
Cow position: chrX:25207629-25207811 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 188-378
Cow position: chrX:29451313-29451507 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 100, 25

Conread position: 188-378
Cow position: chrX:46032494-46032683 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 132
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 9, 27

Conread position: 189-298
Cow position: chrX:27226714-27226605 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 7, 25

Conread position: 189-327
Cow position: chrX:36962981-36962845 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 108, 10

Conread position: 189-352
Cow position: chrX:9425531-9425683 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 189-352
Cow position: chrX:16801036-16801193 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 189-352
Cow position: chrX:30789298-30789461 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 94, 24

Conread position: 189-352
Cow position: chrX:37956076-37955917 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 189-352
Cow position: chrX:47100363-47100527 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 94, 24

Conread position: 189-353
Cow position: chrX:11674343-11674178 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 24

Conread position: 189-354
Cow position: chrX:44040408-44040244 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 189-354
Cow position: chrX:44339089-44339257 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 25

Conread position: 189-354
Cow position: chrX:45044685-45044520 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 100, 24

Conread position: 189-359
Cow position: chrX:11589136-11589304 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 189-360
Cow position: chrX:14925505-14925334 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 7, 23

Conread position: 189-370
Cow position: chrX:15231428-15231608 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 189-376
Cow position: chrX:21672796-21672606 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 189-377
Cow position: chrX:41790196-41790384 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 62, 22

Conread position: 189-377
Cow position: chrX:43008842-43008654 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 7, 29

Conread position: 189-378
Cow position: chrX:4632623-4632814 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 121, 24

Conread position: 189-378
Cow position: chrX:8917625-8917438 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 189-378
Cow position: chrX:12095540-12095728 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 24, 0

Conread position: 189-378
Cow position: chrX:19203114-19203302 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 189-378
Cow position: chrX:24332008-24331820 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 189-378
Cow position: chrX:27442307-27442495 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 189-378
Cow position: chrX:35276218-35276029 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 25

Conread position: 189-378
Cow position: chrX:35431010-35431195 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 189-378
Cow position: chrX:38549678-38549491 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 17, 25

Conread position: 189-378
Cow position: chrX:41454722-41454910 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 189-379
Cow position: chrX:597247-597431 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 190-378
Cow position: chrX:19018598-19018787 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 79, 23

Conread position: 190-378
Cow position: chrX:34398553-34398740 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 23, 0

Conread position: 190-378
Cow position: chrX:35885502-35885683 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 191-378
Cow position: chrX:32867099-32866919 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 192-359
Cow position: chrX:35269084-35268924 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 192-378
Cow position: chrX:19761977-19761798 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 193-341
Cow position: chrX:17929225-17929082 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 193-341
Cow position: chrX:37717949-37717803 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 193-346
Cow position: chrX:15139269-15139422 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 78, 18

Conread position: 193-346
Cow position: chrX:30672157-30672314 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 82, 20

Conread position: 193-348
Cow position: chrX:16323788-16323944 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 68, 20

Conread position: 193-352
Cow position: chrX:51675-51831 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 193-352
Cow position: chrX:10279102-10278940 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 20

Conread position: 193-354
Cow position: chrX:38094299-38094452 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 193-359
Cow position: chrX:23497470-23497628 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 20, 0

Conread position: 193-359
Cow position: chrX:41215550-41215385 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 20

Conread position: 193-360
Cow position: chrX:32215456-32215290 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 193-364
Cow position: chrX:35659021-35658854 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 193-369
Cow position: chrX:296619-296444 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 193-370
Cow position: chrX:25930867-25930689 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 103, 20

Conread position: 193-372
Cow position: chrX:11602260-11602431 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 193-377
Cow position: chrX:40649129-40648939 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 88, 18

Conread position: 193-378
Cow position: chrX:756147-755968 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 193-378
Cow position: chrX:4109412-4109228 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 88, 24

Conread position: 193-378
Cow position: chrX:4403545-4403361 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 193-378
Cow position: chrX:5097567-5097757 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 84, 20

Conread position: 193-378
Cow position: chrX:9251936-9252119 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 193-378
Cow position: chrX:11656305-11656125 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 193-378
Cow position: chrX:11762784-11762957 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 193-378
Cow position: chrX:13122171-13121982 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 112, 24

Conread position: 193-378
Cow position: chrX:16984862-16984685 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 193-378
Cow position: chrX:24365595-24365777 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 193-378
Cow position: chrX:24425774-24425958 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 193-378
Cow position: chrX:34314248-34314068 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 193-378
Cow position: chrX:36367707-36367891 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 193-378
Cow position: chrX:38218940-38218758 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 122, 20

Conread position: 193-378
Cow position: chrX:41990896-41991090 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 66, 20

Conread position: 193-378
Cow position: chrX:42492294-42492479 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 68, 20

Conread position: 193-378
Cow position: chrX:42855690-42855502 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 77, 20

Conread position: 193-378
Cow position: chrX:44055030-44054846 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 24, 0

Conread position: 193-379
Cow position: chrX:6634572-6634387 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 193-379
Cow position: chrX:37867481-37867296 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 193-379
Cow position: chrX:42875436-42875255 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 193-380
Cow position: chrX:40337138-40336953 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 0

Conread position: 193-382
Cow position: chrX:42760480-42760292 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 20, 0

Conread position: 193-403
Cow position: chrX:16555996-16556197 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 112, 20

Conread position: 194-354
Cow position: chrX:48574128-48574289 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 87, 17

Conread position: 194-359
Cow position: chrX:22552753-22552916 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 194-370
Cow position: chrX:17298486-17298311 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 89, 19

Conread position: 194-378
Cow position: chrX:6559230-6559404 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 194-378
Cow position: chrX:41858658-41858838 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 108, 23

Conread position: 194-401
Cow position: chrX:38968121-38967907 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 82, 19

Conread position: 195-336
Cow position: chrX:1996226-1996366 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 195-339
Cow position: chrX:11670912-11670769 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 195-341
Cow position: chrX:35509455-35509598 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 195-342
Cow position: chrX:19356689-19356543 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 195-353
Cow position: chrX:37867658-37867501 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 18, 0

Conread position: 195-354
Cow position: chrX:20339670-20339824 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 0

Conread position: 195-359
Cow position: chrX:8759848-8759689 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 116, 18

Conread position: 195-359
Cow position: chrX:26881854-26882017 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 195-359
Cow position: chrX:27175225-27175061 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 16

Conread position: 195-368
Cow position: chrX:17550439-17550606 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 195-369
Cow position: chrX:44091148-44090975 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 120
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 18, 0

Conread position: 195-369
Cow position: chrX:48004071-48003899 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 121
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 18, 0

Conread position: 195-369
Cow position: chrX:48010830-48010657 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 120
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 18, 0

Conread position: 195-369
Cow position: chrX:48574872-48574699 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 195-370
Cow position: chrX:1396346-1396168 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 195-370
Cow position: chrX:4296599-4296773 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 195-370
Cow position: chrX:26979566-26979737 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 97, 18

Conread position: 195-370
Cow position: chrX:32019908-32020082 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 195-376
Cow position: chrX:4645689-4645867 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 195-377
Cow position: chrX:17231962-17231780 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 104, 18

Conread position: 195-377
Cow position: chrX:46588045-46587867 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 195-378
Cow position: chrX:1960200-1960381 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 195-378
Cow position: chrX:3494596-3494778 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 195-378
Cow position: chrX:10516479-10516297 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 195-378
Cow position: chrX:12290943-12290763 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 195-378
Cow position: chrX:13322159-13321978 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 195-378
Cow position: chrX:17498548-17498366 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 195-378
Cow position: chrX:18111604-18111422 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 195-378
Cow position: chrX:24170500-24170685 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 64, 18

Conread position: 195-378
Cow position: chrX:27705812-27705630 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 18

Conread position: 195-378
Cow position: chrX:29478947-29478768 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 0

Conread position: 195-378
Cow position: chrX:31250669-31250851 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 195-378
Cow position: chrX:42246956-42247138 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 18, 0

Conread position: 195-378
Cow position: chrX:46910033-46909859 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 195-380
Cow position: chrX:46023000-46022817 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 195-381
Cow position: chrX:18030191-18030376 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 195-412
Cow position: chrX:25815674-25815893 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 63, 18

Conread position: 196-330
Cow position: chrX:10479974-10479841 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 196-353
Cow position: chrX:1122323-1122478 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 196-354
Cow position: chrX:38302038-38301877 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 17

Conread position: 196-359
Cow position: chrX:11653991-11653833 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 196-362
Cow position: chrX:32330395-32330226 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 17

Conread position: 196-377
Cow position: chrX:27074827-27075006 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 196-378
Cow position: chrX:1175766-1175938 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 196-378
Cow position: chrX:27145823-27145648 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 17, 0

Conread position: 196-378
Cow position: chrX:35382818-35382992 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 196-378
Cow position: chrX:42449789-42449970 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 144
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 17, 0

Conread position: 196-380
Cow position: chrX:33001122-33000947 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 106, 17

Conread position: 199-359
Cow position: chrX:15100199-15100046 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 97, 14

Conread position: 199-360
Cow position: chrX:45875611-45875454 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 199-369
Cow position: chrX:45139710-45139879 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 199-370
Cow position: chrX:46533083-46533253 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 199-377
Cow position: chrX:23563569-23563746 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 162, 14

Conread position: 199-378
Cow position: chrX:13347490-13347317 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 199-378
Cow position: chrX:30962654-30962833 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 100, 14

Conread position: 199-378
Cow position: chrX:35681788-35681611 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 199-378
Cow position: chrX:37751890-37752062 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 199-380
Cow position: chrX:36866394-36866215 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 18, 0

Conread position: 200-377
Cow position: chrX:34544006-34543829 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 35, 13

Conread position: 200-380
Cow position: chrX:41878717-41878888 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 39, 13

Conread position: 201-316
Cow position: chrX:29723970-29723857 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 201-341
Cow position: chrX:42314672-42314811 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 201-353
Cow position: chrX:41166610-41166756 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 201-360
Cow position: chrX:42087045-42086889 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 201-378
Cow position: chrX:33654624-33654800 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 12, 0

Conread position: 201-378
Cow position: chrX:48495217-48495041 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 69, 12

Conread position: 201-409
Cow position: chrX:46068545-46068747 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 179, 9

Conread position: 202-363
Cow position: chrX:44995718-44995556 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 132
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 141, 11

Conread position: 203-377
Cow position: chrX:13868921-13868747 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 99, 10

Conread position: 203-378
Cow position: chrX:3806895-3806726 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 203-378
Cow position: chrX:34270778-34270605 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 203-378
Cow position: chrX:34420953-34420778 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 77, 10

Conread position: 203-380
Cow position: chrX:34504836-34505007 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 140, 10

Conread position: 204-352
Cow position: chrX:11813290-11813143 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 204-359
Cow position: chrX:10237697-10237850 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 7, 0

Conread position: 204-378
Cow position: chrX:8731310-8731138 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 204-378
Cow position: chrX:27228345-27228170 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 9

Conread position: 204-378
Cow position: chrX:31986356-31986530 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 138, 9

Conread position: 204-378
Cow position: chrX:39427082-39427255 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 204-378
Cow position: chrX:41809959-41810124 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 204-378
Cow position: chrX:48822126-48822298 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 77, 9

Conread position: 205-378
Cow position: chrX:14955552-14955725 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 121
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 70, 84

Conread position: 208-352
Cow position: chrX:32574529-32574387 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 211-378
Cow position: chrX:31294359-31294528 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 211-378
Cow position: chrX:36468158-36468324 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 153, 0

Conread position: 212-348
Cow position: chrX:25048893-25049027 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 212-369
Cow position: chrX:48474118-48473960 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 64, 83

Conread position: 212-377
Cow position: chrX:36976161-36975996 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 212-378
Cow position: chrX:40035230-40035396 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 115
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 212-379
Cow position: chrX:28850927-28850770 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 213-375
Cow position: chrX:44941931-44941767 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 213-378
Cow position: chrX:28877958-28878130 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 48, 0

Conread position: 217-354
Cow position: chrX:46770758-46770895 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 98, 84

Conread position: 217-418
Cow position: chrX:20345655-20345454 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 187, 172

Conread position: 219-369
Cow position: chrX:44660386-44660537 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 221-360
Cow position: chrX:40283323-40283183 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 227-378
Cow position: chrX:39180039-39180189 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 95, 0

Show alignments to all cow chromosomes.