Cow genome map
| Conread name: | Ss1.1-rese11c_n5.5 |
| Conread position: | 1-602 |
| Cow position: | chr17:22552134-22551534 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 2-644 |
| Cow position: | chr17:22552384-22551742 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 3-565 |
| Cow position: | chr17:22552469-22551907 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 3-576 |
| Cow position: | chr17:22452250-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 351 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 3-616 |
| Cow position: | chr17:41440992-41440379 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 3-623 |
| Cow position: | chr17:41440824-41440204 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 3-623 |
| Cow position: | chr17:41441076-41440456 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 188 |
| Conread position: | 6-644 |
| Cow position: | chr17:22552718-22552078 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 8-644 |
| Cow position: | chr17:22552212-22551574 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 12-623 |
| Cow position: | chr17:44467580-44468191 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 171 |
| Conread position: | 17-591 |
| Cow position: | chr17:44467669-44468243 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 235 |
| Conread position: | 17-614 |
| Cow position: | chr17:22552876-22552278 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 83 |
| Conread position: | 19-583 |
| Cow position: | chr17:22590039-22589475 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-556 |
| Cow position: | chr17:41440722-41440187 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 21-601 |
| Cow position: | chr17:22499162-22498582 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 14 |
| Conread position: | 21-614 |
| Cow position: | chr17:22589953-22589360 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 367 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 24-558 |
| Cow position: | chr17:44467843-44468378 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 8, 151 |
| Conread position: | 25-562 |
| Cow position: | chr17:22552026-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 329 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 249, 7 |
| Conread position: | 25-584 |
| Cow position: | chr17:22552278-22551720 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 25-585 |
| Cow position: | chr17:22499325-22498766 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 318, 9 |
| Conread position: | 25-595 |
| Cow position: | chr17:22452311-22451742 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 9 |
| Conread position: | 26-555 |
| Cow position: | chr17:22473405-22473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 325 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 141, 8 |
| Conread position: | 26-583 |
| Cow position: | chr17:22590199-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 26-584 |
| Cow position: | chr17:22553117-22552560 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 26-602 |
| Cow position: | chr17:22552949-22552374 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 8 |
| Conread position: | 27-595 |
| Cow position: | chr17:22473322-22473889 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 343 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 29-655 |
| Cow position: | chr17:22590113-22589486 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 241 |
| Conread position: | 30-584 |
| Cow position: | chr17:22499405-22498851 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 336 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 328, 321 |
| Conread position: | 33-463 |
| Cow position: | chr17:22589605-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 33-493 |
| Cow position: | chr17:22589689-22589229 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 280 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 139, 128 |
| Conread position: | 33-585 |
| Cow position: | chr17:22452388-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-651 |
| Cow position: | chr17:22552523-22551903 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 50 |
| Conread position: | 37-584 |
| Cow position: | chr17:22589769-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 333 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 153, 146 |
| Conread position: | 37-614 |
| Cow position: | chr17:22552771-22552194 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 42-471 |
| Cow position: | chr17:44467946-44468375 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 275 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 125, 132 |
| Conread position: | 42-480 |
| Cow position: | chr17:22498973-22498535 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 45-583 |
| Cow position: | chr17:22552595-22552057 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 222 |
| Conread position: | 45-602 |
| Cow position: | chr17:41441118-41440561 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 232 |
| Conread position: | 56-623 |
| Cow position: | chr17:44467372-44467939 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 63 |
| Conread position: | 57-595 |
| Cow position: | chr17:41440854-41440316 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 59 |
| Conread position: | 61-585 |
| Cow position: | chr17:22590249-22589725 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 117-593 |
| Cow position: | chr17:44467853-44468329 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 300 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 117-614 |
| Cow position: | chr17:22452388-22451891 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 303 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-623 |
| Cow position: | chr17:22553107-22552605 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 316 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 238, 231 |
| Conread position: | 139-586 |
| Cow position: | chr17:22473265-22473712 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-603 |
| Cow position: | chr17:22590254-22589791 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 107, 102 |
| Conread position: | 201-601 |
| Cow position: | chr17:22452388-22451988 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 201-622 |
| Cow position: | chr17:22499318-22498897 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 251, 236 |
| Conread position: | 203-614 |
| Cow position: | chr17:22473248-22473656 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 205-602 |
| Cow position: | chr17:22499398-22499001 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 315, 322 |
| Conread position: | 299-623 |
| Cow position: | chr17:41441116-41440792 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 366-602 |
| Cow position: | chr17:22452391-22452155 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 112, 108 |
| Conread position: | 465-623 |
| Cow position: | chr17:41441118-41440960 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.