Cow genome map

Conread name: Ss1.1-rese11c_n5.5

Conread position: 1-602
Cow position:
Alignm length: 608
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 5

Conread position: 2-644
Cow position:
Alignm length: 648
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 18

Conread position: 3-565
Cow position:
Alignm length: 569
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 30

Conread position: 3-576
Cow position:
Alignm length: 577
Alignm identity: 351
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 23, 32

Conread position: 3-616
Cow position:
Alignm length: 616
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 105

Conread position: 3-623
Cow position:
Alignm length: 625
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 29

Conread position: 3-623
Cow position:
Alignm length: 623
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 188

Conread position: 6-644
Cow position:
Alignm length: 645
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 61

Conread position: 8-644
Cow position:
Alignm length: 642
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 27

Conread position: 12-623
Cow position:
Alignm length: 615
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 171

Conread position: 17-591
Cow position:
Alignm length: 576
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 235

Conread position: 17-614
Cow position:
Alignm length: 601
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 83

Conread position: 19-583
Cow position:
Alignm length: 565
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 21-556
Cow position:
Alignm length: 540
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 18

Conread position: 21-601
Cow position:
Alignm length: 585
Alignm identity: 341
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 14

Conread position: 21-614
Cow position:
Alignm length: 599
Alignm identity: 367
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 5, 12

Conread position: 24-558
Cow position:
Alignm length: 537
Alignm identity: 320
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 8, 151

Conread position: 25-562
Cow position:
Alignm length: 540
Alignm identity: 329
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 249, 7

Conread position: 25-584
Cow position:
Alignm length: 563
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 9

Conread position: 25-585
Cow position:
Alignm length: 562
Alignm identity: 331
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 318, 9

Conread position: 25-595
Cow position:
Alignm length: 572
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 9

Conread position: 26-555
Cow position:
Alignm length: 532
Alignm identity: 325
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 141, 8

Conread position: 26-583
Cow position:
Alignm length: 558
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 26-584
Cow position:
Alignm length: 563
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 11

Conread position: 26-602
Cow position:
Alignm length: 579
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 8

Conread position: 27-595
Cow position:
Alignm length: 571
Alignm identity: 343
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 7, 12

Conread position: 29-655
Cow position:
Alignm length: 630
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 241

Conread position: 30-584
Cow position:
Alignm length: 556
Alignm identity: 336
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 328, 321

Conread position: 33-463
Cow position:
Alignm length: 433
Alignm identity: 256
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 85, 75

Conread position: 33-493
Cow position:
Alignm length: 464
Alignm identity: 280
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 139, 128

Conread position: 33-585
Cow position:
Alignm length: 553
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 33-651
Cow position:
Alignm length: 627
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 50

Conread position: 37-584
Cow position:
Alignm length: 551
Alignm identity: 333
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 153, 146

Conread position: 37-614
Cow position:
Alignm length: 582
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 55

Conread position: 42-471
Cow position:
Alignm length: 433
Alignm identity: 275
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 125, 132

Conread position: 42-480
Cow position:
Alignm length: 441
Alignm identity: 256
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 48, 30

Conread position: 45-583
Cow position:
Alignm length: 541
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 222

Conread position: 45-602
Cow position:
Alignm length: 560
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 232

Conread position: 56-623
Cow position:
Alignm length: 571
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 63

Conread position: 57-595
Cow position:
Alignm length: 542
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 59

Conread position: 61-585
Cow position:
Alignm length: 526
Alignm identity: 317
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 24, 15

Conread position: 117-593
Cow position:
Alignm length: 479
Alignm identity: 300
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 56, 51

Conread position: 117-614
Cow position:
Alignm length: 498
Alignm identity: 303
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 121-623
Cow position:
Alignm length: 506
Alignm identity: 316
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 238, 231

Conread position: 139-586
Cow position:
Alignm length: 448
Alignm identity: 265
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 140-603
Cow position:
Alignm length: 465
Alignm identity: 291
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 107, 102

Conread position: 201-601
Cow position:
Alignm length: 401
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 201-622
Cow position:
Alignm length: 425
Alignm identity: 271
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 251, 236

Conread position: 203-614
Cow position:
Alignm length: 412
Alignm identity: 247
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 205-602
Cow position:
Alignm length: 399
Alignm identity: 250
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 315, 322

Conread position: 299-623
Cow position:
Alignm length: 328
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 68

Conread position: 366-602
Cow position:
Alignm length: 238
Alignm identity: 154
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 112, 108

Conread position: 465-623
Cow position:
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.