Cow genome map
| Conread name: | Ss1.1-rese11c_n5.5 |
| Conread position: | 1-586 |
| Cow position: | chr19:14960345-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 3-585 |
| Cow position: | chr19:23649686-23650268 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 3-623 |
| Cow position: | chr19:14940372-14940992 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 32 |
| Conread position: | 3-623 |
| Cow position: | chr19:14940456-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-623 |
| Cow position: | chr19:23649770-23650390 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 3-638 |
| Cow position: | chr19:14940204-14940842 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 5-623 |
| Cow position: | chr19:14940122-14940740 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 6-601 |
| Cow position: | chr19:23614239-23614834 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 365 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 11-555 |
| Cow position: | chr19:43570251-43569710 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 12-623 |
| Cow position: | chr19:23649527-23650138 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 12-631 |
| Cow position: | chr19:23649359-23649980 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 71 |
| Conread position: | 12-644 |
| Cow position: | chr19:23649611-23650245 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 16-586 |
| Cow position: | chr19:23613410-23613979 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 18 |
| Conread position: | 18-424 |
| Cow position: | chr19:14948404-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 21-585 |
| Cow position: | chr19:23613666-23614230 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 346 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 21-602 |
| Cow position: | chr19:14939971-14940551 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 14 |
| Conread position: | 21-623 |
| Cow position: | chr19:14959503-14958916 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 5, 14 |
| Conread position: | 21-644 |
| Cow position: | chr19:23614422-23615047 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 387 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 335, 331 |
| Conread position: | 25-577 |
| Cow position: | chr19:23613587-23614138 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 331 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 158, 9 |
| Conread position: | 25-583 |
| Cow position: | chr19:20678106-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 337 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 25-623 |
| Cow position: | chr19:14940311-14940908 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 6 |
| Conread position: | 25-623 |
| Cow position: | chr19:23613923-23614520 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 9 |
| Conread position: | 25-623 |
| Cow position: | chr19:23649877-23650474 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 26-585 |
| Cow position: | chr19:20677855-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 344 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 86, 5 |
| Conread position: | 26-591 |
| Cow position: | chr19:23614176-23614740 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 343 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 162, 5 |
| Conread position: | 27-586 |
| Cow position: | chr19:20677602-20678162 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 342 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 5, 324 |
| Conread position: | 29-595 |
| Cow position: | chr19:14940062-14940628 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-598 |
| Cow position: | chr19:23596939-23597504 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 31-555 |
| Cow position: | chr19:23597189-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 242 |
| Conread position: | 33-460 |
| Cow position: | chr19:23650052-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 33-466 |
| Cow position: | chr19:23614686-23615117 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 33-580 |
| Cow position: | chr19:23614350-23614897 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 216, 210 |
| Conread position: | 33-644 |
| Cow position: | chr19:20677945-20678558 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 364 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 241, 221 |
| Conread position: | 33-644 |
| Cow position: | chr19:23614098-23614711 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 368 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 148, 137 |
| Conread position: | 33-645 |
| Cow position: | chr19:20635639-20635025 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 38-468 |
| Cow position: | chr19:14959243-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 346, 122 |
| Conread position: | 42-541 |
| Cow position: | chr19:43570137-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 205, 201 |
| Conread position: | 42-544 |
| Cow position: | chr19:23649977-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 133, 147 |
| Conread position: | 42-585 |
| Cow position: | chr19:23613519-23614062 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 333 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 42-586 |
| Cow position: | chr19:20677702-20678246 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 328 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 312, 293 |
| Conread position: | 42-586 |
| Cow position: | chr19:23613771-23614315 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 314, 306 |
| Conread position: | 42-601 |
| Cow position: | chr19:23649305-23649864 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 75 |
| Conread position: | 42-631 |
| Cow position: | chr19:23597116-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 74 |
| Conread position: | 43-585 |
| Cow position: | chr19:23597032-23597575 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 149 |
| Conread position: | 43-602 |
| Cow position: | chr19:14960387-14959830 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 51-500 |
| Cow position: | chr19:20678215-20678664 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 52-510 |
| Cow position: | chr19:14948453-14947996 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 273 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 299, 50 |
| Conread position: | 66-644 |
| Cow position: | chr19:43570278-43569703 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 356 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 118-644 |
| Cow position: | chr19:23649297-23649825 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 129 |
| Conread position: | 119-592 |
| Cow position: | chr19:14948470-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 65 |
| Conread position: | 123-614 |
| Cow position: | chr19:14939988-14940479 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-586 |
| Cow position: | chr19:23613351-23613811 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-614 |
| Cow position: | chr19:14960387-14959902 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 127-623 |
| Cow position: | chr19:23596868-23597361 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 306 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 307, 167 |
| Conread position: | 201-466 |
| Cow position: | chr19:14959575-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 204-602 |
| Cow position: | chr19:20677528-20677926 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 204-635 |
| Cow position: | chr19:14948469-14948036 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 248, 64 |
| Conread position: | 210-587 |
| Cow position: | chr19:14959239-14958868 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 234-623 |
| Cow position: | chr19:14960448-14960061 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 288, 0 |
| Conread position: | 287-586 |
| Cow position: | chr19:20677527-20677826 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-623 |
| Cow position: | chr19:14940012-14940320 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 357-623 |
| Cow position: | chr19:23649284-23649550 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 374-644 |
| Cow position: | chr19:14939987-14940259 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 244, 268 |
Show alignments to all cow chromosomes.