Cow genome map

Conread name: Ss1.1-rese11c_n5.5

Conread position: 1-586
Cow position:
Alignm length: 588
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 34

Conread position: 3-585
Cow position:
Alignm length: 586
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 23

Conread position: 3-623
Cow position:
Alignm length: 622
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 32

Conread position: 3-623
Cow position:
Alignm length: 621
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-623
Cow position:
Alignm length: 625
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 23

Conread position: 3-638
Cow position:
Alignm length: 640
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 32

Conread position: 5-623
Cow position:
Alignm length: 620
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 30

Conread position: 6-601
Cow position:
Alignm length: 600
Alignm identity: 365
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 20, 29

Conread position: 11-555
Cow position:
Alignm length: 548
Alignm identity: 327
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 73, 23

Conread position: 12-623
Cow position:
Alignm length: 617
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 14

Conread position: 12-631
Cow position:
Alignm length: 624
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 71

Conread position: 12-644
Cow position:
Alignm length: 639
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 14

Conread position: 16-586
Cow position:
Alignm length: 575
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 18

Conread position: 18-424
Cow position:
Alignm length: 409
Alignm identity: 251
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 8, 17

Conread position: 21-585
Cow position:
Alignm length: 568
Alignm identity: 346
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 5, 22

Conread position: 21-602
Cow position:
Alignm length: 583
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 14

Conread position: 21-623
Cow position:
Alignm length: 608
Alignm identity: 365
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 5, 14

Conread position: 21-644
Cow position:
Alignm length: 632
Alignm identity: 387
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 335, 331

Conread position: 25-577
Cow position:
Alignm length: 555
Alignm identity: 331
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 158, 9

Conread position: 25-583
Cow position:
Alignm length: 561
Alignm identity: 337
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 165, 17

Conread position: 25-623
Cow position:
Alignm length: 600
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 6

Conread position: 25-623
Cow position:
Alignm length: 602
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 9

Conread position: 25-623
Cow position:
Alignm length: 603
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 17

Conread position: 26-585
Cow position:
Alignm length: 564
Alignm identity: 344
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 86, 5

Conread position: 26-591
Cow position:
Alignm length: 568
Alignm identity: 343
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 162, 5

Conread position: 27-586
Cow position:
Alignm length: 565
Alignm identity: 342
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 5, 324

Conread position: 29-595
Cow position:
Alignm length: 567
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-598
Cow position:
Alignm length: 570
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 94

Conread position: 31-555
Cow position:
Alignm length: 527
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 242

Conread position: 33-460
Cow position:
Alignm length: 431
Alignm identity: 270
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 50, 66

Conread position: 33-466
Cow position:
Alignm length: 438
Alignm identity: 267
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 50, 66

Conread position: 33-580
Cow position:
Alignm length: 550
Alignm identity: 328
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 216, 210

Conread position: 33-644
Cow position:
Alignm length: 617
Alignm identity: 364
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 241, 221

Conread position: 33-644
Cow position:
Alignm length: 616
Alignm identity: 368
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 148, 137

Conread position: 33-645
Cow position:
Alignm length: 620
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 49

Conread position: 38-468
Cow position:
Alignm length: 434
Alignm identity: 264
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 346, 122

Conread position: 42-541
Cow position:
Alignm length: 502
Alignm identity: 300
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 205, 201

Conread position: 42-544
Cow position:
Alignm length: 505
Alignm identity: 314
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 133, 147

Conread position: 42-585
Cow position:
Alignm length: 547
Alignm identity: 333
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 39, 30

Conread position: 42-586
Cow position:
Alignm length: 546
Alignm identity: 328
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 312, 293

Conread position: 42-586
Cow position:
Alignm length: 546
Alignm identity: 324
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 314, 306

Conread position: 42-601
Cow position:
Alignm length: 562
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 75

Conread position: 42-631
Cow position:
Alignm length: 591
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 74

Conread position: 43-585
Cow position:
Alignm length: 545
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 149

Conread position: 43-602
Cow position:
Alignm length: 560
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 0

Conread position: 51-500
Cow position:
Alignm length: 454
Alignm identity: 280
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 64, 43

Conread position: 52-510
Cow position:
Alignm length: 460
Alignm identity: 273
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 299, 50

Conread position: 66-644
Cow position:
Alignm length: 584
Alignm identity: 356
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 124, 28

Conread position: 118-644
Cow position:
Alignm length: 533
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 129

Conread position: 119-592
Cow position:
Alignm length: 475
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 65

Conread position: 123-614
Cow position:
Alignm length: 492
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-586
Cow position:
Alignm length: 461
Alignm identity: 280
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 127-614
Cow position:
Alignm length: 488
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 0

Conread position: 127-623
Cow position:
Alignm length: 498
Alignm identity: 306
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 307, 167

Conread position: 201-466
Cow position:
Alignm length: 267
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 42

Conread position: 204-602
Cow position:
Alignm length: 400
Alignm identity: 244
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 154, 147

Conread position: 204-635
Cow position:
Alignm length: 438
Alignm identity: 276
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 248, 64

Conread position: 210-587
Cow position:
Alignm length: 379
Alignm identity: 244
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 32

Conread position: 234-623
Cow position:
Alignm length: 390
Alignm identity: 237
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 288, 0

Conread position: 287-586
Cow position:
Alignm length: 300
Alignm identity: 184
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 315-623
Cow position:
Alignm length: 309
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 357-623
Cow position:
Alignm length: 267
Alignm identity: 177
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 374-644
Cow position:
Alignm length: 274
Alignm identity: 175
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 244, 268

Show alignments to all cow chromosomes.