Cow genome map

Conread name: Ss1.1-rese11c_n5.5

Conread position: 1-583
Cow position: chr22:12431864-12431283 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 25

Conread position: 2-601
Cow position: chr22:12499167-12499766 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 33

Conread position: 3-219
Cow position: chr22:12475503-12475287 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 143
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 30

Conread position: 3-564
Cow position: chr22:12418981-12418421 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 29

Conread position: 3-591
Cow position: chr22:12458478-12457890 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 29

Conread position: 3-601
Cow position: chr22:12431442-12430844 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 23

Conread position: 3-622
Cow position: chr22:12419250-12418614 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 29

Conread position: 3-623
Cow position: chr22:12476175-12475555 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 23

Conread position: 3-623
Cow position: chr22:12499084-12499704 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 23

Conread position: 4-538
Cow position: chr22:12431105-12430571 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 321
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 22, 28

Conread position: 4-585
Cow position: chr22:12432365-12431784 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-317
Cow position: chr22:12418727-12418415 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 204
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 38

Conread position: 5-493
Cow position: chr22:11701149-11701637 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 28

Conread position: 5-561
Cow position: chr22:11640906-11641463 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 344
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 21, 27

Conread position: 5-590
Cow position: chr22:12399460-12398875 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 30

Conread position: 5-644
Cow position: chr22:12432196-12431555 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 620, 0

Conread position: 6-577
Cow position: chr22:12431355-12430784 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 26

Conread position: 6-585
Cow position: chr22:12431775-12431196 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 20

Conread position: 8-644
Cow position: chr22:12476002-12475364 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 262

Conread position: 8-644
Cow position: chr22:12499257-12499895 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 262

Conread position: 9-583
Cow position: chr22:12431604-12431030 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 350
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 24, 17

Conread position: 9-622
Cow position: chr22:12432024-12431411 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 23

Conread position: 12-313
Cow position: chr22:12499681-12499981 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 205
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 14, 23

Conread position: 12-592
Cow position: chr22:12476250-12475670 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 20

Conread position: 12-592
Cow position: chr22:12499009-12499589 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 20

Conread position: 12-593
Cow position: chr22:11640829-11641410 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 17

Conread position: 12-623
Cow position: chr22:12432273-12431662 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 20

Conread position: 14-562
Cow position: chr22:12431518-12430967 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 55

Conread position: 15-593
Cow position: chr22:12399701-12399124 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 16

Conread position: 18-629
Cow position: chr22:12432434-12431823 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 13

Conread position: 20-597
Cow position: chr22:12476074-12475497 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 23

Conread position: 20-623
Cow position: chr22:12432097-12431494 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 6

Conread position: 21-595
Cow position: chr22:12458376-12457802 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 170

Conread position: 21-623
Cow position: chr22:11640754-11641356 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 5

Conread position: 25-350
Cow position: chr22:12399103-12398779 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 202
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 25-389
Cow position: chr22:14430555-14430918 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 228
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 84, 6

Conread position: 25-433
Cow position: chr22:12399187-12398780 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 251
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 159, 9

Conread position: 25-479
Cow position: chr22:46654332-46654787 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 272
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 25-585
Cow position: chr22:12458623-12458064 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 9

Conread position: 25-585
Cow position: chr22:46654164-46654725 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 252

Conread position: 25-586
Cow position: chr22:14468044-14468604 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 345
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 229, 9

Conread position: 25-601
Cow position: chr22:12431251-12430676 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 6

Conread position: 25-616
Cow position: chr22:12475900-12475310 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 6

Conread position: 25-616
Cow position: chr22:12476320-12475730 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 6

Conread position: 25-616
Cow position: chr22:12498939-12499529 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 6

Conread position: 25-616
Cow position: chr22:12499359-12499949 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 6

Conread position: 25-623
Cow position: chr22:11640675-11641272 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 18

Conread position: 26-596
Cow position: chr22:12399774-12399205 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 8

Conread position: 29-550
Cow position: chr22:12458284-12457763 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 316
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 218, 214

Conread position: 31-331
Cow position: chr22:11701343-11701643 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 194
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 44

Conread position: 31-555
Cow position: chr22:12475811-12475287 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 68

Conread position: 33-471
Cow position: chr22:12499534-12499972 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 273
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 33-589
Cow position: chr22:14429806-14430362 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 339
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 253, 243

Conread position: 33-595
Cow position: chr22:12385508-12384944 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 352
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 78, 44

Conread position: 38-623
Cow position: chr22:12419383-12418781 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 42-463
Cow position: chr22:12385329-12384908 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 261
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 205, 200

Conread position: 42-502
Cow position: chr22:14430403-14430863 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 269
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 77

Conread position: 42-585
Cow position: chr22:46654266-46654809 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 324
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 145, 127

Conread position: 42-586
Cow position: chr22:14430319-14430863 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 319
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 73

Conread position: 42-623
Cow position: chr22:12431655-12431074 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 219

Conread position: 42-623
Cow position: chr22:12431907-12431326 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 42-631
Cow position: chr22:46654098-46654687 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 359
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 145, 127

Conread position: 43-644
Cow position: chr22:12432494-12431891 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 590, 0

Conread position: 44-585
Cow position: chr22:11701104-11701645 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 38

Conread position: 45-555
Cow position: chr22:12499462-12499972 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 54

Conread position: 45-573
Cow position: chr22:12385410-12384883 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 324
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 139, 146

Conread position: 48-616
Cow position: chr22:12399837-12399269 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 352
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 136, 143

Conread position: 49-644
Cow position: chr22:12399914-12399323 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 370
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 309, 47

Conread position: 50-644
Cow position: chr22:11640615-11641211 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 40

Conread position: 51-592
Cow position: chr22:12476379-12475838 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 51-624
Cow position: chr22:12419017-12418444 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 216

Conread position: 57-592
Cow position: chr22:12498886-12499421 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 65-595
Cow position: chr22:46654037-46654567 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 325
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 216, 211

Conread position: 66-458
Cow position: chr22:12430959-12430567 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 234
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 11, 16

Conread position: 105-584
Cow position: chr22:12498850-12499329 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 293
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 115-331
Cow position: chr22:11666689-11666905 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 145
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 141, 147

Conread position: 117-584
Cow position: chr22:14430142-14430609 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 276
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 65, 55

Conread position: 117-586
Cow position: chr22:14468051-14468520 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 301
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 73, 60

Conread position: 119-586
Cow position: chr22:14429640-14430107 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 268
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 120-592
Cow position: chr22:12385675-12385199 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 294
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 7, 222

Conread position: 122-623
Cow position: chr22:12432499-12431998 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 128-585
Cow position: chr22:11666450-11666907 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 300
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 121, 115

Conread position: 128-591
Cow position: chr22:11701104-11701567 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 302
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 121, 115

Conread position: 148-577
Cow position: chr22:12458585-12458156 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 26

Conread position: 189-585
Cow position: chr22:12476409-12476013 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 54

Conread position: 201-586
Cow position: chr22:46654005-46654390 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 233
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 231, 220

Conread position: 204-587
Cow position: chr22:14429641-14430024 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 225
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 206-586
Cow position: chr22:14467972-14468352 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 237
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 318, 296

Conread position: 212-623
Cow position: chr22:11701104-11701515 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 247
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 121, 127

Conread position: 212-631
Cow position: chr22:11666450-11666871 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 271
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 123, 128

Conread position: 219-601
Cow position: chr22:12458598-12458216 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 48

Conread position: 291-644
Cow position: chr22:11701099-11701454 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 219
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 330, 0

Conread position: 295-595
Cow position: chr22:12458606-12458306 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 205
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 61, 56

Conread position: 309-614
Cow position: chr22:12476373-12476068 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 203
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 309-614
Cow position: chr22:12498886-12499191 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 202
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 374-602
Cow position: chr22:12498867-12499095 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 374-622
Cow position: chr22:12476392-12476144 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 398-623
Cow position: chr22:12458587-12458362 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 461-617
Cow position: chr22:12545412-12545568 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.