Cow genome map


           Conread name:
           Ss1.1-rese11c_n5.5
        

               Conread position:
               1-583
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 25
               

               Conread position:
               2-601
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 33
               

               Conread position:
               3-219
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               23, 30
               

               Conread position:
               3-564
               

               Cow position:
               
               

               Alignm length:
               564
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 29
               

               Conread position:
               3-591
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 29
               

               Conread position:
               3-601
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 23
               

               Conread position:
               3-622
               

               Cow position:
               
               

               Alignm length:
               638
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 29
               

               Conread position:
               3-623
               

               Cow position:
               
               

               Alignm length:
               623
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 23
               

               Conread position:
               3-623
               

               Cow position:
               
               

               Alignm length:
               625
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 23
               

               Conread position:
               4-538
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               321
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               22, 28
               

               Conread position:
               4-585
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               5-317
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               21, 38
               

               Conread position:
               5-493
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 28
               

               Conread position:
               5-561
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               344
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               21, 27
               

               Conread position:
               5-590
               

               Cow position:
               
               

               Alignm length:
               590
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 30
               

               Conread position:
               5-644
               

               Cow position:
               
               

               Alignm length:
               642
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               620, 0
               

               Conread position:
               6-577
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 26
               

               Conread position:
               6-585
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 20
               

               Conread position:
               8-644
               

               Cow position:
               
               

               Alignm length:
               640
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               253, 262
               

               Conread position:
               8-644
               

               Cow position:
               
               

               Alignm length:
               642
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               253, 262
               

               Conread position:
               9-583
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               350
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               24, 17
               

               Conread position:
               9-622
               

               Cow position:
               
               

               Alignm length:
               616
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 23
               

               Conread position:
               12-313
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               14, 23
               

               Conread position:
               12-592
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 20
               

               Conread position:
               12-592
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 20
               

               Conread position:
               12-593
               

               Cow position:
               
               

               Alignm length:
               583
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 17
               

               Conread position:
               12-623
               

               Cow position:
               
               

               Alignm length:
               614
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               14-562
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 55
               

               Conread position:
               15-593
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 16
               

               Conread position:
               18-629
               

               Cow position:
               
               

               Alignm length:
               614
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               406, 13
               

               Conread position:
               20-597
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 23
               

               Conread position:
               20-623
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 6
               

               Conread position:
               21-595
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 170
               

               Conread position:
               21-623
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 5
               

               Conread position:
               25-350
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               25-389
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               84, 6
               

               Conread position:
               25-433
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               159, 9
               

               Conread position:
               25-479
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               25-585
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               427, 9
               

               Conread position:
               25-585
               

               Cow position:
               
               

               Alignm length:
               564
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 252
               

               Conread position:
               25-586
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               345
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               229, 9
               

               Conread position:
               25-601
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               304, 6
               

               Conread position:
               25-616
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 6
               

               Conread position:
               25-616
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 6
               

               Conread position:
               25-616
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 6
               

               Conread position:
               25-616
               

               Cow position:
               
               

               Alignm length:
               593
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 6
               

               Conread position:
               25-623
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 18
               

               Conread position:
               26-596
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 8
               

               Conread position:
               29-550
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               316
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               218, 214
               

               Conread position:
               31-331
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               55, 44
               

               Conread position:
               31-555
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 68
               

               Conread position:
               33-471
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               273
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               33-589
               

               Cow position:
               
               

               Alignm length:
               560
               

               Alignm identity:
               339
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               253, 243
               

               Conread position:
               33-595
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               352
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               78, 44
               

               Conread position:
               38-623
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 15
               

               Conread position:
               42-463
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               261
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               205, 200
               

               Conread position:
               42-502
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               66, 77
               

               Conread position:
               42-585
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               324
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               145, 127
               

               Conread position:
               42-586
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               319
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               41, 73
               

               Conread position:
               42-623
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 219
               

               Conread position:
               42-623
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               42-631
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               359
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               145, 127
               

               Conread position:
               43-644
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               590, 0
               

               Conread position:
               44-585
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 38
               

               Conread position:
               45-555
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 54
               

               Conread position:
               45-573
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               324
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               139, 146
               

               Conread position:
               48-616
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               352
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               136, 143
               

               Conread position:
               49-644
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               370
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               309, 47
               

               Conread position:
               50-644
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 40
               

               Conread position:
               51-592
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               51-624
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 216
               

               Conread position:
               57-592
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               65-595
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               325
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               216, 211
               

               Conread position:
               66-458
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               11, 16
               

               Conread position:
               105-584
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               293
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               115-331
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               141, 147
               

               Conread position:
               117-584
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               276
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               65, 55
               

               Conread position:
               117-586
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               301
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               73, 60
               

               Conread position:
               119-586
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               268
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               120-592
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               294
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               7, 222
               

               Conread position:
               122-623
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               128-585
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               300
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               121, 115
               

               Conread position:
               128-591
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               302
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               121, 115
               

               Conread position:
               148-577
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 26
               

               Conread position:
               189-585
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 54
               

               Conread position:
               201-586
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               231, 220
               

               Conread position:
               204-587
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               206-586
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               318, 296
               

               Conread position:
               212-623
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               121, 127
               

               Conread position:
               212-631
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               271
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               123, 128
               

               Conread position:
               219-601
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 48
               

               Conread position:
               291-644
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               219
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               330, 0
               

               Conread position:
               295-595
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               61, 56
               

               Conread position:
               309-614
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               309-614
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               374-602
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               374-622
               

               Cow position:
               
               

               Alignm length:
               249
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               398-623
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               461-617
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.