Cow genome map
| Conread name: | Ss1.1-rese11c_n5.5 |
| Conread position: | 1-287 |
| Cow position: | chr23:25723999-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 25 |
| Conread position: | 1-539 |
| Cow position: | chr23:25698612-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 335 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 255, 272 |
| Conread position: | 2-494 |
| Cow position: | chr23:24522688-24522198 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 297 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 116, 80 |
| Conread position: | 2-550 |
| Cow position: | chr23:24560677-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 3-288 |
| Cow position: | chr23:24626438-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 3-371 |
| Cow position: | chr23:24547032-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 3-385 |
| Cow position: | chr23:24639682-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 3-541 |
| Cow position: | chr23:25660197-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 3-590 |
| Cow position: | chr23:24535999-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 3-595 |
| Cow position: | chr23:24560760-24560168 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 240 |
| Conread position: | 3-595 |
| Cow position: | chr23:24639346-24639938 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 29 |
| Conread position: | 3-614 |
| Cow position: | chr23:24547284-24546673 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 4-539 |
| Cow position: | chr23:24547199-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 439 |
| Conread position: | 6-595 |
| Cow position: | chr23:24639265-24639854 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 100 |
| Conread position: | 6-595 |
| Cow position: | chr23:25626415-25627001 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 136 |
| Conread position: | 7-344 |
| Cow position: | chr23:25626665-25627002 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 281, 293 |
| Conread position: | 7-614 |
| Cow position: | chr23:25626332-25626936 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 0 |
| Conread position: | 16-623 |
| Cow position: | chr23:25626258-25626861 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 18 |
| Conread position: | 21-593 |
| Cow position: | chr23:25626010-25626582 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 343 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 5, 15 |
| Conread position: | 25-351 |
| Cow position: | chr23:25724058-25723733 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 25-478 |
| Cow position: | chr23:24547093-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 6 |
| Conread position: | 25-585 |
| Cow position: | chr23:24560821-24560262 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 6 |
| Conread position: | 29-602 |
| Cow position: | chr23:25660141-25660712 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 31-623 |
| Cow position: | chr23:24639458-24640050 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 56 |
| Conread position: | 32-555 |
| Cow position: | chr23:24639543-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 35-622 |
| Cow position: | chr23:24547336-24546749 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 148 |
| Conread position: | 37-433 |
| Cow position: | chr23:24522571-24522176 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 210, 5 |
| Conread position: | 37-623 |
| Cow position: | chr23:24639212-24639798 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 177 |
| Conread position: | 42-459 |
| Cow position: | chr23:25660320-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 42-473 |
| Cow position: | chr23:24626309-24626738 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 200 |
| Conread position: | 42-644 |
| Cow position: | chr23:24522814-24522215 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 363 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 577, 19 |
| Conread position: | 51-350 |
| Cow position: | chr23:24654043-24654342 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 51-541 |
| Cow position: | chr23:25626544-25627029 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 304 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 52-595 |
| Cow position: | chr23:25698645-25698102 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 288 |
| Conread position: | 52-644 |
| Cow position: | chr23:24560879-24560285 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 573, 0 |
| Conread position: | 54-622 |
| Cow position: | chr23:24536032-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 57-454 |
| Cow position: | chr23:25724111-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 86-602 |
| Cow position: | chr23:25698695-25698179 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 315 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 96, 80 |
| Conread position: | 91-556 |
| Cow position: | chr23:24626274-24626737 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 434 |
| Conread position: | 116-623 |
| Cow position: | chr23:24536054-24535547 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 67, 75 |
| Conread position: | 121-539 |
| Cow position: | chr23:25724131-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 311 |
| Conread position: | 135-505 |
| Cow position: | chr23:24654043-24654415 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 150-647 |
| Cow position: | chr23:24547305-24546806 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 474, 0 |
| Conread position: | 189-595 |
| Cow position: | chr23:25626010-25626416 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 61, 53 |
| Conread position: | 218-589 |
| Cow position: | chr23:24654042-24654415 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 343, 0 |
| Conread position: | 225-623 |
| Cow position: | chr23:24547314-24546916 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 126 |
| Conread position: | 231-628 |
| Cow position: | chr23:25724105-25723708 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-623 |
| Cow position: | chr23:24560897-24560560 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 287-601 |
| Cow position: | chr23:24626302-24626616 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 289-603 |
| Cow position: | chr23:25724131-25723817 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 302-584 |
| Cow position: | chr23:24654042-24654324 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-613 |
| Cow position: | chr23:25698642-25698339 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 334-623 |
| Cow position: | chr23:25698699-25698410 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 90 |
| Conread position: | 371-614 |
| Cow position: | chr23:24626302-24626545 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 371-623 |
| Cow position: | chr23:25660145-25660397 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.