Cow genome map
| Conread name: | Ss1.1-rese11c_n5.5 |
| Conread position: | 1-434 |
| Cow position: | chr25:22235872-22236305 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 105 |
| Conread position: | 1-602 |
| Cow position: | chr25:25652652-25653252 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 2-644 |
| Cow position: | chr25:33298608-33299251 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 3-303 |
| Cow position: | chr25:33127931-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 3-331 |
| Cow position: | chr25:25652989-25653317 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 3-360 |
| Cow position: | chr25:346493-346850 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 3-464 |
| Cow position: | chr25:33127763-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 113 |
| Conread position: | 3-467 |
| Cow position: | chr25:34769659-34769195 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 3-469 |
| Cow position: | chr25:33157260-33156794 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 3-548 |
| Cow position: | chr25:33144894-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 3-595 |
| Cow position: | chr25:33157512-33156920 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 3-595 |
| Cow position: | chr25:34447235-34447819 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 365 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 3-595 |
| Cow position: | chr25:34769995-34769403 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 3-601 |
| Cow position: | chr25:34447067-34447665 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 3-616 |
| Cow position: | chr25:25652569-25653182 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 94 |
| Conread position: | 3-623 |
| Cow position: | chr25:25652485-25653105 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 5-382 |
| Cow position: | chr25:36801590-36801967 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 25, 21 |
| Conread position: | 5-509 |
| Cow position: | chr25:23420346-23420850 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 311 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 5-614 |
| Cow position: | chr25:34770077-34769468 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 5-628 |
| Cow position: | chr25:34763125-34763745 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 5-630 |
| Cow position: | chr25:33299198-33299823 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 21 |
| Conread position: | 5-644 |
| Cow position: | chr25:326376-327023 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 7-644 |
| Cow position: | chr25:33299027-33299671 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 167 |
| Conread position: | 8-410 |
| Cow position: | chr25:34732643-34732239 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 11-584 |
| Cow position: | chr25:36800936-36801497 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 358 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 12-584 |
| Cow position: | chr25:33299289-33299856 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 12-587 |
| Cow position: | chr25:34762883-34763455 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 236 |
| Conread position: | 12-623 |
| Cow position: | chr25:34762967-34763572 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 14-541 |
| Cow position: | chr25:3664068-3664598 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 14-608 |
| Cow position: | chr25:34447159-34447753 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 173 |
| Conread position: | 16-378 |
| Cow position: | chr25:3664241-3664603 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 95, 101 |
| Conread position: | 16-644 |
| Cow position: | chr25:33157414-33156786 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 15 |
| Conread position: | 20-598 |
| Cow position: | chr25:326559-327143 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 13 |
| Conread position: | 20-617 |
| Cow position: | chr25:33298961-33299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 163 |
| Conread position: | 21-266 |
| Cow position: | chr25:34733946-34733701 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 61, 79 |
| Conread position: | 21-613 |
| Cow position: | chr25:33298878-33299470 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 14 |
| Conread position: | 21-622 |
| Cow position: | chr25:33298794-33299395 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 17 |
| Conread position: | 21-623 |
| Cow position: | chr25:326479-327084 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 21 |
| Conread position: | 26-466 |
| Cow position: | chr25:36801528-36801967 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 8 |
| Conread position: | 26-602 |
| Cow position: | chr25:33299136-33299711 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 8 |
| Conread position: | 28-370 |
| Cow position: | chr25:366711-367053 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 28-454 |
| Cow position: | chr25:346434-346860 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 28-602 |
| Cow position: | chr25:34447008-34447582 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 322 |
| Conread position: | 30-493 |
| Cow position: | chr25:34769716-34769253 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 287 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 244, 237 |
| Conread position: | 31-624 |
| Cow position: | chr25:25652261-25652854 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 88 |
| Conread position: | 31-624 |
| Cow position: | chr25:34762821-34763408 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 32-617 |
| Cow position: | chr25:33298469-33299054 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 33-595 |
| Cow position: | chr25:34769881-34769319 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-606 |
| Cow position: | chr25:36800790-36801360 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 33-630 |
| Cow position: | chr25:36801366-36801963 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 128 |
| Conread position: | 34-433 |
| Cow position: | chr25:414703-414308 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 37-550 |
| Cow position: | chr25:36801454-36801967 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 37-613 |
| Cow position: | chr25:33298726-33299302 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 39-595 |
| Cow position: | chr25:34446935-34447491 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 150 |
| Conread position: | 41-552 |
| Cow position: | chr25:23267497-23266993 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 45, 41 |
| Conread position: | 42-365 |
| Cow position: | chr25:3676076-3676399 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-375 |
| Cow position: | chr25:24398738-24398405 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 77 |
| Conread position: | 42-377 |
| Cow position: | chr25:24385080-24384745 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 42-433 |
| Cow position: | chr25:3636394-3636003 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-444 |
| Cow position: | chr25:3675992-3676394 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 69, 77 |
| Conread position: | 42-473 |
| Cow position: | chr25:36844620-36844198 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 229, 225 |
| Conread position: | 42-552 |
| Cow position: | chr25:22235829-22236339 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 307 |
| Conread position: | 42-584 |
| Cow position: | chr25:25652776-25653318 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 42-614 |
| Cow position: | chr25:36800547-36801119 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 123, 133 |
| Conread position: | 42-616 |
| Cow position: | chr25:25652188-25652762 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 42-616 |
| Cow position: | chr25:25652356-25652930 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 77 |
| Conread position: | 42-623 |
| Cow position: | chr25:3664015-3664596 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 74 |
| Conread position: | 42-623 |
| Cow position: | chr25:33144849-33145427 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 163 |
| Conread position: | 42-625 |
| Cow position: | chr25:25652440-25653023 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 43-268 |
| Cow position: | chr25:427330-427555 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-625 |
| Cow position: | chr25:3663932-3664514 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 76 |
| Conread position: | 44-469 |
| Cow position: | chr25:4657463-4657038 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 75 |
| Conread position: | 44-584 |
| Cow position: | chr25:33298565-33299105 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 44-610 |
| Cow position: | chr25:36800633-36801199 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 231 |
| Conread position: | 44-614 |
| Cow position: | chr25:34473509-34474076 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 45-586 |
| Cow position: | chr25:34770121-34769580 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 47-528 |
| Cow position: | chr25:24385243-24384762 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 307 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 99, 104 |
| Conread position: | 47-604 |
| Cow position: | chr25:3636557-3636000 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 49-587 |
| Cow position: | chr25:34713873-34714411 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 148, 153 |
| Conread position: | 54-644 |
| Cow position: | chr25:33157545-33156953 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 57-435 |
| Cow position: | chr25:33529113-33529491 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 62 |
| Conread position: | 57-437 |
| Cow position: | chr25:33506763-33507146 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 368, 0 |
| Conread position: | 57-566 |
| Cow position: | chr25:33127733-33128242 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 293 |
| Conread position: | 57-612 |
| Cow position: | chr25:24398972-24398420 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 65-533 |
| Cow position: | chr25:326352-326820 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 70-611 |
| Cow position: | chr25:23420327-23420866 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 339 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 105, 121 |
| Conread position: | 73-623 |
| Cow position: | chr25:22235779-22236326 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 26 |
| Conread position: | 87-595 |
| Cow position: | chr25:34770163-34769655 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-429 |
| Cow position: | chr25:18642209-18641865 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 146, 186 |
| Conread position: | 97-552 |
| Cow position: | chr25:36844649-36844203 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 101, 105 |
| Conread position: | 99-353 |
| Cow position: | chr25:427302-427556 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 99-616 |
| Cow position: | chr25:23267523-23267013 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 175, 168 |
| Conread position: | 105-592 |
| Cow position: | chr25:414795-414317 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 251, 45 |
| Conread position: | 113-644 |
| Cow position: | chr25:33157570-33157037 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 114-623 |
| Cow position: | chr25:33127706-33128215 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 115-331 |
| Cow position: | chr25:34733936-34733720 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-378 |
| Cow position: | chr25:3636236-3635974 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-442 |
| Cow position: | chr25:22941303-22940977 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 314, 300 |
| Conread position: | 116-623 |
| Cow position: | chr25:33530135-33530642 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 314 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 242, 236 |
| Conread position: | 116-697 |
| Cow position: | chr25:22940526-22939945 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 68 |
| Conread position: | 117-443 |
| Cow position: | chr25:33530472-33530798 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-601 |
| Cow position: | chr25:24385341-24384857 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 134, 141 |
| Conread position: | 117-616 |
| Cow position: | chr25:33530220-33530719 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 228 |
| Conread position: | 118-614 |
| Cow position: | chr25:33305410-33304918 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 303 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 119-479 |
| Cow position: | chr25:34732615-34732255 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 306, 298 |
| Conread position: | 123-466 |
| Cow position: | chr25:34734012-34733669 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 63, 57 |
| Conread position: | 123-598 |
| Cow position: | chr25:33144846-33145318 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 60 |
| Conread position: | 126-455 |
| Cow position: | chr25:366725-367054 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 259, 268 |
| Conread position: | 126-542 |
| Cow position: | chr25:3675992-3676408 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 131, 126 |
| Conread position: | 126-623 |
| Cow position: | chr25:25652188-25652685 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-553 |
| Cow position: | chr25:4657463-4657038 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 137 |
| Conread position: | 128-623 |
| Cow position: | chr25:34473509-34474001 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 299 |
| Conread position: | 129-519 |
| Cow position: | chr25:33529101-33529491 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 307, 311 |
| Conread position: | 141-623 |
| Cow position: | chr25:3636547-3636065 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 148-530 |
| Cow position: | chr25:33506770-33507152 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 359, 370 |
| Conread position: | 149-618 |
| Cow position: | chr25:33529037-33529506 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-601 |
| Cow position: | chr25:23420323-23420774 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 289 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 153-601 |
| Cow position: | chr25:33127661-33128109 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 156-624 |
| Cow position: | chr25:23266992-23266525 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 161-644 |
| Cow position: | chr25:36800582-36801067 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 275, 282 |
| Conread position: | 181-623 |
| Cow position: | chr25:36844649-36844216 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 86 |
| Conread position: | 197-631 |
| Cow position: | chr25:34446925-34447359 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 160 |
| Conread position: | 202-614 |
| Cow position: | chr25:36800539-36800951 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 204-562 |
| Cow position: | chr25:34732614-34732256 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 148, 166 |
| Conread position: | 205-623 |
| Cow position: | chr25:24398992-24398577 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 250, 204 |
| Conread position: | 209-547 |
| Cow position: | chr25:427243-427582 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 6, 60 |
| Conread position: | 210-538 |
| Cow position: | chr25:366725-367053 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 210-629 |
| Cow position: | chr25:346448-346867 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 188, 192 |
| Conread position: | 210-632 |
| Cow position: | chr25:3675992-3676413 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 120 |
| Conread position: | 210-638 |
| Cow position: | chr25:34447022-34447453 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 0 |
| Conread position: | 211-448 |
| Cow position: | chr25:427330-427567 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 212-616 |
| Cow position: | chr25:4657463-4657059 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 137 |
| Conread position: | 213-622 |
| Cow position: | chr25:34770121-34769712 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 215-623 |
| Cow position: | chr25:3636557-3636149 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-623 |
| Cow position: | chr25:33529028-33529427 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 225-616 |
| Cow position: | chr25:33506763-33507154 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 211, 216 |
| Conread position: | 231-550 |
| Cow position: | chr25:34733988-34733669 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 231-578 |
| Cow position: | chr25:22940495-22940148 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 231-593 |
| Cow position: | chr25:33530082-33530444 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 211, 204 |
| Conread position: | 233-623 |
| Cow position: | chr25:326352-326742 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 125, 121 |
| Conread position: | 243-623 |
| Cow position: | chr25:33127667-33128047 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 251-601 |
| Cow position: | chr25:34734053-34733702 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 258-644 |
| Cow position: | chr25:34770160-34769772 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 261-623 |
| Cow position: | chr25:36844653-36844300 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 304, 0 |
| Conread position: | 264-623 |
| Cow position: | chr25:22940543-22940187 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 273-577 |
| Cow position: | chr25:33305421-33305120 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 276-644 |
| Cow position: | chr25:33157575-33157205 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 287-583 |
| Cow position: | chr25:34732615-34732319 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 149, 164 |
| Conread position: | 291-623 |
| Cow position: | chr25:3663928-3664260 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-623 |
| Cow position: | chr25:3675991-3676321 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 226, 232 |
| Conread position: | 294-601 |
| Cow position: | chr25:366725-367032 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 262, 271 |
| Conread position: | 298-612 |
| Cow position: | chr25:33506752-33507066 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-623 |
| Cow position: | chr25:3636558-3636233 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-591 |
| Cow position: | chr25:23420320-23420596 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 318-594 |
| Cow position: | chr25:414751-414480 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 202, 56 |
| Conread position: | 335-623 |
| Cow position: | chr25:414814-414535 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 29 |
| Conread position: | 345-623 |
| Cow position: | chr25:36844653-36844375 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 350-624 |
| Cow position: | chr25:427301-427575 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 129, 124 |
| Conread position: | 371-601 |
| Cow position: | chr25:34732615-34732385 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 149, 156 |
| Conread position: | 373-623 |
| Cow position: | chr25:3663926-3664176 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-623 |
| Cow position: | chr25:3675987-3676237 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 373-640 |
| Cow position: | chr25:33144844-33145108 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 378-644 |
| Cow position: | chr25:366725-366993 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 398-589 |
| Cow position: | chr25:23420319-23420510 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 401-641 |
| Cow position: | chr25:33127656-33127900 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 12, 40 |
Show alignments to all cow chromosomes.