Cow genome map
| Conread name: | Ss1.1-rese11c_n5.5 |
| Conread position: | 1-478 |
| Cow position: | chr28:11333842-11333371 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 1-550 |
| Cow position: | chr28:9253063-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 334 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 1-595 |
| Cow position: | chr28:9252979-9253572 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-631 |
| Cow position: | chr28:7757460-7758091 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 392 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 3-349 |
| Cow position: | chr28:33210273-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 3-695 |
| Cow position: | chr28:34695957-34696648 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 641 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 668, 0 |
| Conread position: | 4-623 |
| Cow position: | chr28:34695874-34696493 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 6-562 |
| Cow position: | chr28:7810396-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 335 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 6-596 |
| Cow position: | chr28:11333753-11333161 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 362 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 13-612 |
| Cow position: | chr28:34695716-34696314 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 21 |
| Conread position: | 21-541 |
| Cow position: | chr28:11333990-11333470 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 11 |
| Conread position: | 21-584 |
| Cow position: | chr28:7757647-7758210 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 345 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 5, 14 |
| Conread position: | 25-508 |
| Cow position: | chr28:34673423-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 334, 6 |
| Conread position: | 25-540 |
| Cow position: | chr28:7757820-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 140, 9 |
| Conread position: | 25-602 |
| Cow position: | chr28:7810332-7810899 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 345 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 318, 7 |
| Conread position: | 25-623 |
| Cow position: | chr28:11334153-11333556 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 26-601 |
| Cow position: | chr28:7757567-7758143 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 26-616 |
| Cow position: | chr28:7758157-7758730 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 33-466 |
| Cow position: | chr28:7758399-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 33-589 |
| Cow position: | chr28:7758247-7758786 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 323, 50 |
| Conread position: | 39-470 |
| Cow position: | chr28:33210225-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 0 |
| Conread position: | 40-614 |
| Cow position: | chr28:11334055-11333481 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 42-381 |
| Cow position: | chr28:9299221-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 42-550 |
| Cow position: | chr28:7758324-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 230, 213 |
| Conread position: | 42-614 |
| Cow position: | chr28:7757416-7757988 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 357 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 88, 98 |
| Conread position: | 43-589 |
| Cow position: | chr28:9290089-9290629 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 326 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 43-592 |
| Cow position: | chr28:34673356-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 332 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-623 |
| Cow position: | chr28:7757755-7758333 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 355 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 132, 144 |
| Conread position: | 64-623 |
| Cow position: | chr28:34695850-34696409 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 215 |
| Conread position: | 66-590 |
| Cow position: | chr28:7810288-7810803 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 99, 104 |
| Conread position: | 67-606 |
| Cow position: | chr28:7757357-7757897 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 337 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 22, 30 |
| Conread position: | 117-614 |
| Cow position: | chr28:9290079-9290570 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 303 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 120-577 |
| Cow position: | chr28:9298561-9299015 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 123-465 |
| Cow position: | chr28:9299218-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 125-554 |
| Cow position: | chr28:33210227-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 0 |
| Conread position: | 206-549 |
| Cow position: | chr28:9299217-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 207-602 |
| Cow position: | chr28:9253016-9253411 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 209-602 |
| Cow position: | chr28:33210227-33210621 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 0 |
| Conread position: | 212-602 |
| Cow position: | chr28:7757334-7757724 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 277-602 |
| Cow position: | chr28:11334154-11333829 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 305-623 |
| Cow position: | chr28:34695839-34696157 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 378-623 |
| Cow position: | chr28:33210228-33210473 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 51 |
Show alignments to all cow chromosomes.