Cow genome map
| Conread name: | Ss1.1-rese11c_n5.5 |
| Conread position: | 3-614 |
| Cow position: | chr6:49428609-49429220 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 94 |
| Conread position: | 3-623 |
| Cow position: | chr6:49428273-49428893 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-623 |
| Cow position: | chr6:49428693-49429313 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-623 |
| Cow position: | chr6:49396010-49396622 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 0 |
| Conread position: | 5-623 |
| Cow position: | chr6:49428779-49429397 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 559, 564 |
| Conread position: | 6-240 |
| Cow position: | chr6:49396761-49396995 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-623 |
| Cow position: | chr6:49362150-49362740 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 176 |
| Conread position: | 12-608 |
| Cow position: | chr6:49428954-49429548 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 85 |
| Conread position: | 12-623 |
| Cow position: | chr6:49428450-49429061 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 329 |
| Conread position: | 18-644 |
| Cow position: | chr6:49396270-49396897 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 607, 12 |
| Conread position: | 20-496 |
| Cow position: | chr6:49396523-49396999 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 6 |
| Conread position: | 20-592 |
| Cow position: | chr6:49340886-49341456 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 15 |
| Conread position: | 25-595 |
| Cow position: | chr6:49340640-49341209 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 25-599 |
| Cow position: | chr6:49340388-49340962 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 572, 9 |
| Conread position: | 25-614 |
| Cow position: | chr6:49340472-49341060 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 9 |
| Conread position: | 26-592 |
| Cow position: | chr6:49340557-49341122 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 26-592 |
| Cow position: | chr6:49340725-49341290 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 8 |
| Conread position: | 26-601 |
| Cow position: | chr6:49340809-49341383 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 28-623 |
| Cow position: | chr6:49395700-49396286 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 83, 46 |
| Conread position: | 29-623 |
| Cow position: | chr6:49396364-49396958 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-549 |
| Cow position: | chr6:49362327-49362834 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 0 |
| Conread position: | 30-580 |
| Cow position: | chr6:49396449-49396999 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 522, 539 |
| Conread position: | 30-623 |
| Cow position: | chr6:49361842-49362416 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 359 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-623 |
| Cow position: | chr6:49428385-49428977 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 221 |
| Conread position: | 31-648 |
| Cow position: | chr6:49428553-49429172 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 227 |
| Conread position: | 42-623 |
| Cow position: | chr6:49428900-49429481 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 432 |
| Conread position: | 44-623 |
| Cow position: | chr6:49428230-49428809 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-623 |
| Cow position: | chr6:49361938-49362500 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 356 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 216, 205 |
| Conread position: | 65-623 |
| Cow position: | chr6:49396232-49396790 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 370 |
| Conread position: | 86-614 |
| Cow position: | chr6:49395674-49396199 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 314 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 305, 61 |
| Conread position: | 108-623 |
| Cow position: | chr6:49427958-49428473 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 126-644 |
| Cow position: | chr6:49340404-49340924 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 316 |
| Conread position: | 201-601 |
| Cow position: | chr6:49340395-49340795 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 336-594 |
| Cow position: | chr6:49340362-49340620 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 21 |
Show alignments to all cow chromosomes.