Cow genome map

Conread name: Ss1.1-rese11c_n5.5

Conread position: 3-614
Cow position: chr6:49428609-49429220 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 94

Conread position: 3-623
Cow position: chr6:49428273-49428893 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-623
Cow position: chr6:49428693-49429313 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-623
Cow position: chr6:49396010-49396622 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 0

Conread position: 5-623
Cow position: chr6:49428779-49429397 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 559, 564

Conread position: 6-240
Cow position: chr6:49396761-49396995 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 11-623
Cow position: chr6:49362150-49362740 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 176

Conread position: 12-608
Cow position: chr6:49428954-49429548 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 85

Conread position: 12-623
Cow position: chr6:49428450-49429061 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 329

Conread position: 18-644
Cow position: chr6:49396270-49396897 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 607, 12

Conread position: 20-496
Cow position: chr6:49396523-49396999 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 6

Conread position: 20-592
Cow position: chr6:49340886-49341456 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 15

Conread position: 25-595
Cow position: chr6:49340640-49341209 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 9

Conread position: 25-599
Cow position: chr6:49340388-49340962 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 572, 9

Conread position: 25-614
Cow position: chr6:49340472-49341060 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 9

Conread position: 26-592
Cow position: chr6:49340557-49341122 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 8

Conread position: 26-592
Cow position: chr6:49340725-49341290 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 8

Conread position: 26-601
Cow position: chr6:49340809-49341383 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 8

Conread position: 28-623
Cow position: chr6:49395700-49396286 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 354
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 83, 46

Conread position: 29-623
Cow position: chr6:49396364-49396958 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-549
Cow position: chr6:49362327-49362834 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 0

Conread position: 30-580
Cow position: chr6:49396449-49396999 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 522, 539

Conread position: 30-623
Cow position: chr6:49361842-49362416 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 359
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 54, 0

Conread position: 31-623
Cow position: chr6:49428385-49428977 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 221

Conread position: 31-648
Cow position: chr6:49428553-49429172 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 227

Conread position: 42-623
Cow position: chr6:49428900-49429481 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 443, 432

Conread position: 44-623
Cow position: chr6:49428230-49428809 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 49-623
Cow position: chr6:49361938-49362500 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 356
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 216, 205

Conread position: 65-623
Cow position: chr6:49396232-49396790 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 370

Conread position: 86-614
Cow position: chr6:49395674-49396199 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 314
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 305, 61

Conread position: 108-623
Cow position: chr6:49427958-49428473 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 42

Conread position: 126-644
Cow position: chr6:49340404-49340924 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 316

Conread position: 201-601
Cow position: chr6:49340395-49340795 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 336-594
Cow position: chr6:49340362-49340620 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 170
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 16, 21

Show alignments to all cow chromosomes.