Cow genome map
| Conread name: | Ss1.1-rese11c_n5.5 |
| Conread position: | 1-644 |
| Cow position: | chr7:42879232-42878588 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 5 |
| Conread position: | 2-466 |
| Cow position: | chr7:3180329-3180793 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 286 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 2-584 |
| Cow position: | chr7:3179825-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 2-644 |
| Cow position: | chr7:1014401-1015039 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 379 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 3-595 |
| Cow position: | chr7:1014732-1015324 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 4-595 |
| Cow position: | chr7:3180079-3180670 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 5-471 |
| Cow position: | chr7:1014986-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 5-550 |
| Cow position: | chr7:3180248-3180793 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 334 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 12-579 |
| Cow position: | chr7:42878970-42878403 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 349 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 19-586 |
| Cow position: | chr7:8325466-8326033 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 21-555 |
| Cow position: | chr7:1014918-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 322 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 381, 375 |
| Conread position: | 21-595 |
| Cow position: | chr7:1014504-1015072 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 350 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 230, 140 |
| Conread position: | 21-595 |
| Cow position: | chr7:3180012-3180586 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 14 |
| Conread position: | 21-623 |
| Cow position: | chr7:12293411-12294013 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 96 |
| Conread position: | 25-456 |
| Cow position: | chr7:11600867-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 159, 9 |
| Conread position: | 25-576 |
| Cow position: | chr7:1014671-1015221 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 533, 9 |
| Conread position: | 25-577 |
| Cow position: | chr7:11601035-11600484 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 337 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 146, 6 |
| Conread position: | 25-594 |
| Cow position: | chr7:11601203-11600635 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 343 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 147, 9 |
| Conread position: | 25-595 |
| Cow position: | chr7:3179765-3180334 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 6 |
| Conread position: | 25-601 |
| Cow position: | chr7:18390230-18390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 25-623 |
| Cow position: | chr7:42879124-42878527 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 26-538 |
| Cow position: | chr7:42878787-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 313 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 26-577 |
| Cow position: | chr7:11601118-11600568 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 8 |
| Conread position: | 26-595 |
| Cow position: | chr7:3180186-3180754 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 8 |
| Conread position: | 26-614 |
| Cow position: | chr7:18390147-18390734 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 5 |
| Conread position: | 29-622 |
| Cow position: | chr7:42879037-42878444 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 307 |
| Conread position: | 33-599 |
| Cow position: | chr7:42878865-42878298 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 41-626 |
| Cow position: | chr7:28846506-28847091 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 78 |
| Conread position: | 42-479 |
| Cow position: | chr7:8277932-8278369 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 42-585 |
| Cow position: | chr7:8325573-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 326 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 205, 201 |
| Conread position: | 42-586 |
| Cow position: | chr7:8325321-8325865 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 42-595 |
| Cow position: | chr7:1014855-1015408 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 389 |
| Conread position: | 43-586 |
| Cow position: | chr7:8277597-8278140 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 45-623 |
| Cow position: | chr7:3179700-3180278 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 146 |
| Conread position: | 48-654 |
| Cow position: | chr7:8277854-8278462 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 366 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 133, 123 |
| Conread position: | 65-601 |
| Cow position: | chr7:28846446-28846982 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 47 |
| Conread position: | 66-587 |
| Cow position: | chr7:42879252-42878731 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-648 |
| Cow position: | chr7:1014223-1014791 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 89-583 |
| Cow position: | chr7:3179660-3180154 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 305 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 102-595 |
| Cow position: | chr7:18390138-18390631 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 140 |
| Conread position: | 115-596 |
| Cow position: | chr7:12293421-12293902 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 326 |
| Conread position: | 117-493 |
| Cow position: | chr7:1439882-1440257 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 157, 89 |
| Conread position: | 117-616 |
| Cow position: | chr7:12293339-12293838 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 127-586 |
| Cow position: | chr7:1014688-1015147 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 120, 115 |
| Conread position: | 128-577 |
| Cow position: | chr7:8324735-8325184 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 276 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 136-616 |
| Cow position: | chr7:28846433-28846913 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 254, 266 |
| Conread position: | 150-602 |
| Cow position: | chr7:42879252-42878800 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-616 |
| Cow position: | chr7:12293288-12293754 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 295 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 201-595 |
| Cow position: | chr7:11601112-11600718 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 210-599 |
| Cow position: | chr7:42879276-42878886 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 387, 0 |
| Conread position: | 223-602 |
| Cow position: | chr7:28846436-28846815 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 243 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-623 |
| Cow position: | chr7:28846433-28846752 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 122, 136 |
Show alignments to all cow chromosomes.