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Cow genome map

           
Conread name:
           
Ss1.1-rfbs3918b_e17.5
        

               
Conread position:
               
3-197
               

               
Cow position:
               
chr12:35377484-35377288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
6-420
               

               
Cow position:
               
chr12:4021746-4021338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
12-453
               

               
Cow position:
               
chr12:18944009-18943579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 170
               

               
Conread position:
               
20-496
               

               
Cow position:
               
chr12:4866467-4866943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
25-151
               

               
Cow position:
               
chr12:25821067-25820936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 91
               

               
Conread position:
               
25-197
               

               
Cow position:
               
chr12:25549389-25549561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
25-264
               

               
Cow position:
               
chr12:46635290-46635051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
33, 147
               

               
Conread position:
               
25-420
               

               
Cow position:
               
chr12:12682505-12682103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
25-527
               

               
Cow position:
               
chr12:34466340-34465858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 19
               

               
Conread position:
               
26-264
               

               
Cow position:
               
chr12:9465805-9465563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
52, 78
               

               
Conread position:
               
26-359
               

               
Cow position:
               
chr12:24032664-24032990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
192, 39
               

               
Conread position:
               
29-269
               

               
Cow position:
               
chr12:14413989-14414221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
29-550
               

               
Cow position:
               
chr12:10846963-10846465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
31, 125
               

               
Conread position:
               
34-438
               

               
Cow position:
               
chr12:44905300-44905691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 69
               

               
Conread position:
               
37-223
               

               
Cow position:
               
chr12:14691666-14691481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
37-233
               

               
Cow position:
               
chr12:35291111-35290911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
39-398
               

               
Cow position:
               
chr12:1469494-1469856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
33, 234
               

               
Conread position:
               
41-220
               

               
Cow position:
               
chr12:42275434-42275615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
42-532
               

               
Cow position:
               
chr12:18518340-18518837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 115
               

               
Conread position:
               
43-217
               

               
Cow position:
               
chr12:3716334-3716157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr12:23381887-23381706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr12:29359448-29359267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
43-223
               

               
Cow position:
               
chr12:27808802-27808620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
43-233
               

               
Cow position:
               
chr12:4656899-4656712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
171, 128
               

               
Conread position:
               
43-447
               

               
Cow position:
               
chr12:12304076-12304453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
44-198
               

               
Cow position:
               
chr12:31261538-31261697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 136
               

               
Conread position:
               
44-217
               

               
Cow position:
               
chr12:9400419-9400592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-220
               

               
Cow position:
               
chr12:3372366-3372543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
44-220
               

               
Cow position:
               
chr12:35213760-35213938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
44-225
               

               
Cow position:
               
chr12:10462180-10462360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
44-225
               

               
Cow position:
               
chr12:48437227-48437048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
44-250
               

               
Cow position:
               
chr12:37123186-37123390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
44-265
               

               
Cow position:
               
chr12:32657518-32657742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
44-266
               

               
Cow position:
               
chr12:22932891-22932664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
44-266
               

               
Cow position:
               
chr12:30143462-30143689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
44-266
               

               
Cow position:
               
chr12:30420153-30419926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
44-310
               

               
Cow position:
               
chr12:19852948-19853208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
44-352
               

               
Cow position:
               
chr12:38041081-38040780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
44-397
               

               
Cow position:
               
chr12:3545577-3545931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 263
               

               
Conread position:
               
44-526
               

               
Cow position:
               
chr12:42685277-42684776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
147, 238
               

               
Conread position:
               
44-550
               

               
Cow position:
               
chr12:36313539-36314021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
44-551
               

               
Cow position:
               
chr12:35311000-35310498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
44-552
               

               
Cow position:
               
chr12:18123360-18123852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
45-212
               

               
Cow position:
               
chr12:38832518-38832349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr12:6403857-6403680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr12:14355292-14355113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr12:24028555-24028377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr12:27505724-27505546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr12:45684344-45684170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 70
               

               
Conread position:
               
45-229
               

               
Cow position:
               
chr12:22132296-22132122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
45-257
               

               
Cow position:
               
chr12:22124694-22124893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
45-266
               

               
Cow position:
               
chr12:3567262-3567487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
45-266
               

               
Cow position:
               
chr12:36211958-36211731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-268
               

               
Cow position:
               
chr12:21828759-21828984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 202
               

               
Conread position:
               
45-363
               

               
Cow position:
               
chr12:16851334-16851017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
36, 121
               

               
Conread position:
               
45-388
               

               
Cow position:
               
chr12:941307-941654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 266
               

               
Conread position:
               
45-524
               

               
Cow position:
               
chr12:2805370-2804928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
46-220
               

               
Cow position:
               
chr12:27123228-27123053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 151
               

               
Conread position:
               
46-228
               

               
Cow position:
               
chr12:33403333-33403163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
46-232
               

               
Cow position:
               
chr12:794223-794411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
46-447
               

               
Cow position:
               
chr12:19869146-19869533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 115
               

               
Conread position:
               
46-452
               

               
Cow position:
               
chr12:34473934-34473547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
181, 28
               

               
Conread position:
               
46-532
               

               
Cow position:
               
chr12:9229803-9229351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 22
               

               
Conread position:
               
47-166
               

               
Cow position:
               
chr12:4719262-4719383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
47-221
               

               
Cow position:
               
chr12:7464402-7464232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
48-262
               

               
Cow position:
               
chr12:5134816-5135036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
48-264
               

               
Cow position:
               
chr12:39753540-39753760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 53
               

               
Conread position:
               
48-359
               

               
Cow position:
               
chr12:4116182-4116474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
48-477
               

               
Cow position:
               
chr12:44596137-44595709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
48-552
               

               
Cow position:
               
chr12:11835924-11836413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
49-144
               

               
Cow position:
               
chr12:11590420-11590517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-154
               

               
Cow position:
               
chr12:45679809-45679916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-161
               

               
Cow position:
               
chr12:43192508-43192394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-165
               

               
Cow position:
               
chr12:7919745-7919861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
49-178
               

               
Cow position:
               
chr12:38111408-38111538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-179
               

               
Cow position:
               
chr12:37481452-37481322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
49-191
               

               
Cow position:
               
chr12:1475817-1475673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-192
               

               
Cow position:
               
chr12:6186223-6186080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
49-192
               

               
Cow position:
               
chr12:28789573-28789718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-192
               

               
Cow position:
               
chr12:37514553-37514408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 127
               

               
Conread position:
               
49-195
               

               
Cow position:
               
chr12:7205926-7205779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
49-208
               

               
Cow position:
               
chr12:30946509-30946666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
49-218
               

               
Cow position:
               
chr12:597890-597719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-219
               

               
Cow position:
               
chr12:41202777-41202605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:180469-180296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:1076283-1076456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:2967851-2968024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
28, 86
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:3160742-3160915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:8487652-8487482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 131
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:9987773-9987601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 134
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:20377233-20377406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:25096371-25096198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:25868478-25868648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:28187911-28187739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:28812241-28812414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:29486795-29486962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:30636870-30636698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:31328400-31328231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:33297536-33297694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:35136197-35136366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:37114441-37114268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:37524857-37524679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:39502085-39502256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
12, 116
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:40868262-40868435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:42061358-42061529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr12:47415726-47415897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
57, 68
               

               
Conread position:
               
49-222
               

               
Cow position:
               
chr12:6136902-6136730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 141
               

               
Conread position:
               
49-224
               

               
Cow position:
               
chr12:30016153-30015975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-225
               

               
Cow position:
               
chr12:26527065-26527233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
49-225
               

               
Cow position:
               
chr12:45555739-45555565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
49-229
               

               
Cow position:
               
chr12:5146513-5146681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
49-229
               

               
Cow position:
               
chr12:11082756-11082927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
49-229
               

               
Cow position:
               
chr12:29119576-29119755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 115
               

               
Conread position:
               
49-230
               

               
Cow position:
               
chr12:1883829-1883644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
29, 170
               

               
Conread position:
               
49-230
               

               
Cow position:
               
chr12:19420254-19420079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
29, 87
               

               
Conread position:
               
49-231
               

               
Cow position:
               
chr12:31949464-31949644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
49-233
               

               
Cow position:
               
chr12:35754964-35754783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
140, 16
               

               
Conread position:
               
49-234
               

               
Cow position:
               
chr12:13965094-13964910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
49-238
               

               
Cow position:
               
chr12:4914123-4913930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
49-245
               

               
Cow position:
               
chr12:18937065-18937263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-252
               

               
Cow position:
               
chr12:10028574-10028782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
49-252
               

               
Cow position:
               
chr12:25357554-25357348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
49-255
               

               
Cow position:
               
chr12:17099100-17099307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
30, 175
               

               
Conread position:
               
49-257
               

               
Cow position:
               
chr12:12976508-12976291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-263
               

               
Cow position:
               
chr12:9414088-9413890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
49-263
               

               
Cow position:
               
chr12:18076214-18076426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr12:17007877-17008097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
146, 199
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr12:24755346-24755133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr12:30224292-30224074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr12:31925332-31925542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
192, 19
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr12:35718380-35718173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr12:41979621-41979405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr12:46700878-46701098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr12:3212000-3212222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
27, 128
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr12:21212712-21212932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr12:22571938-22572159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr12:26869118-26868900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr12:35807354-35807574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
30, 167
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr12:42625694-42625472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:5813401-5813623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 165
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:6105407-6105185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:7873303-7873525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:10359626-10359845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:15146213-15145991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:19039939-19039714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:22601133-22601355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:25987938-25987716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:35218726-35218509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:40158558-40158343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
175, 11
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr12:41710840-41710618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr12:3364818-3365043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr12:7690335-7690110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr12:10076597-10076822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr12:10442439-10442664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr12:14802810-14803035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr12:18724681-18724906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr12:20316828-20316615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr12:26333652-26333877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr12:33112206-33112431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr12:39931095-39931320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-323
               

               
Cow position:
               
chr12:17065407-17065685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 221
               

               
Conread position:
               
49-335
               

               
Cow position:
               
chr12:24440490-24440776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-349
               

               
Cow position:
               
chr12:32399873-32400177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
49-350
               

               
Cow position:
               
chr12:3039192-3039487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr12:5153492-5153795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr12:30411711-30412014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr12:43470896-43471199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-352
               

               
Cow position:
               
chr12:3070788-3071087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr12:132278-132588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr12:2821538-2821848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr12:9840523-9840833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr12:33970813-33971123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr12:35124403-35124713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr12:41184067-41184377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr12:41185500-41185810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr12:44005658-44005348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr12:2512206-2512512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
169, 35
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr12:11583084-11583375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr12:28572381-28572672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr12:63143-63454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 214
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr12:1007945-1008258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 253
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr12:33580093-33580406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr12:7449440-7449756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr12:30059489-30059805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr12:32340722-32341038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr12:37832579-37832895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 234
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr12:13438713-13439031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr12:27615538-27615857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr12:29127864-29127545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 234
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr12:36446313-36446630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 214
               

               
Conread position:
               
49-372
               

               
Cow position:
               
chr12:21666068-21666392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 226
               

               
Conread position:
               
49-372
               

               
Cow position:
               
chr12:25956919-25956595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
49-377
               

               
Cow position:
               
chr12:44014162-44013837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 248
               

               
Conread position:
               
49-392
               

               
Cow position:
               
chr12:7528315-7527966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 226
               

               
Conread position:
               
49-397
               

               
Cow position:
               
chr12:6530522-6530871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-397
               

               
Cow position:
               
chr12:14940903-14941252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-397
               

               
Cow position:
               
chr12:28011221-28010886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
49-397
               

               
Cow position:
               
chr12:42922283-42921934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 258
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr12:17719226-17719577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 228
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr12:28012166-28011815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr12:43534018-43534368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr12:46124640-46124990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr12:25878690-25879047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr12:32320344-32320698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr12:41737480-41737833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
49-407
               

               
Cow position:
               
chr12:15259034-15258684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 132
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr12:10461684-10462027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr12:12199227-12198875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-419
               

               
Cow position:
               
chr12:45160831-45160474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
151, 19
               

               
Conread position:
               
49-420
               

               
Cow position:
               
chr12:13008097-13007727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
30, 108
               

               
Conread position:
               
49-434
               

               
Cow position:
               
chr12:5273441-5273060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 133
               

               
Conread position:
               
49-438
               

               
Cow position:
               
chr12:30011046-30010655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 234
               

               
Conread position:
               
49-441
               

               
Cow position:
               
chr12:5800716-5801110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
49-443
               

               
Cow position:
               
chr12:18020530-18020926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 171
               

               
Conread position:
               
49-447
               

               
Cow position:
               
chr12:2711170-2711571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 127
               

               
Conread position:
               
49-448
               

               
Cow position:
               
chr12:29969257-29969653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
49-450
               

               
Cow position:
               
chr12:40807074-40807480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 215
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr12:18572315-18572700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
22, 129
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr12:30437929-30438314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr12:34148673-34148280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
49-453
               

               
Cow position:
               
chr12:15173497-15173902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-454
               

               
Cow position:
               
chr12:8076016-8075616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-456
               

               
Cow position:
               
chr12:41580795-41581193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-461
               

               
Cow position:
               
chr12:1773985-1773574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-461
               

               
Cow position:
               
chr12:2812905-2813314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
49-461
               

               
Cow position:
               
chr12:31959571-31959966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 148
               

               
Conread position:
               
49-462
               

               
Cow position:
               
chr12:21045377-21044978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 44
               

               
Conread position:
               
49-493
               

               
Cow position:
               
chr12:4008607-4008154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 83
               

               
Conread position:
               
49-499
               

               
Cow position:
               
chr12:37770549-37770998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 148
               

               
Conread position:
               
49-506
               

               
Cow position:
               
chr12:5632196-5631745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-515
               

               
Cow position:
               
chr12:17270229-17270685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
169, 21
               

               
Conread position:
               
49-516
               

               
Cow position:
               
chr12:15122020-15122474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
49-516
               

               
Cow position:
               
chr12:22516058-22515589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
49-518
               

               
Cow position:
               
chr12:9143070-9143535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 212
               

               
Conread position:
               
49-523
               

               
Cow position:
               
chr12:27563699-27563223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
49-524
               

               
Cow position:
               
chr12:18421248-18420764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-524
               

               
Cow position:
               
chr12:47803833-47804292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
49-526
               

               
Cow position:
               
chr12:1223664-1223208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-526
               

               
Cow position:
               
chr12:17000940-17001400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 19
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr12:4342043-4341575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr12:7147357-7147870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr12:17881550-17882015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr12:18577524-18577987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr12:27055285-27055744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr12:27435038-27434545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
49-531
               

               
Cow position:
               
chr12:19697090-19697558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 130
               

               
Conread position:
               
49-532
               

               
Cow position:
               
chr12:19865920-19866407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
49-532
               

               
Cow position:
               
chr12:30578781-30578292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 258
               

               
Conread position:
               
49-535
               

               
Cow position:
               
chr12:36501269-36500781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
49-544
               

               
Cow position:
               
chr12:25561049-25561544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 131
               

               
Conread position:
               
49-547
               

               
Cow position:
               
chr12:6240985-6241507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 236
               

               
Conread position:
               
49-547
               

               
Cow position:
               
chr12:15089169-15089694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 252
               

               
Conread position:
               
49-547
               

               
Cow position:
               
chr12:34385836-34385351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
49-548
               

               
Cow position:
               
chr12:15429922-15429418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 233
               

               
Conread position:
               
49-549
               

               
Cow position:
               
chr12:36118649-36119148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
49-551
               

               
Cow position:
               
chr12:9482617-9482122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 33
               

               
Conread position:
               
49-551
               

               
Cow position:
               
chr12:21314700-21315202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
49-551
               

               
Cow position:
               
chr12:35368315-35368831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr12:25312699-25312210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 225
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr12:42602558-42602051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 40
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr12:43476034-43476538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
50-147
               

               
Cow position:
               
chr12:15160437-15160535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
50-157
               

               
Cow position:
               
chr12:13018110-13018001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
50-188
               

               
Cow position:
               
chr12:38774928-38775068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
50-217
               

               
Cow position:
               
chr12:21653153-21652988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
50-220
               

               
Cow position:
               
chr12:24046257-24046086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
50-231
               

               
Cow position:
               
chr12:2019687-2019870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 101
               

               
Conread position:
               
50-233
               

               
Cow position:
               
chr12:8772777-8772595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 135
               

               
Conread position:
               
50-266
               

               
Cow position:
               
chr12:21486275-21486479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
171, 79
               

               
Conread position:
               
50-269
               

               
Cow position:
               
chr12:34965375-34965599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr12:46143501-46143784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
50-360
               

               
Cow position:
               
chr12:2242210-2241903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
24, 149
               

               
Conread position:
               
50-373
               

               
Cow position:
               
chr12:3578959-3579285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
50-377
               

               
Cow position:
               
chr12:1245973-1246302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
28, 153
               

               
Conread position:
               
50-382
               

               
Cow position:
               
chr12:1343417-1343102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
50-397
               

               
Cow position:
               
chr12:42604444-42604096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 226
               

               
Conread position:
               
50-449
               

               
Cow position:
               
chr12:3196932-3197343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
50-449
               

               
Cow position:
               
chr12:31429877-31429496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
50-455
               

               
Cow position:
               
chr12:47928890-47929281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 129
               

               
Conread position:
               
50-462
               

               
Cow position:
               
chr12:31228258-31228662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
50-475
               

               
Cow position:
               
chr12:6489294-6488893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
50-517
               

               
Cow position:
               
chr12:42966680-42967145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
50-526
               

               
Cow position:
               
chr12:21393377-21393869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 133
               

               
Conread position:
               
50-527
               

               
Cow position:
               
chr12:10895869-10895394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
50-527
               

               
Cow position:
               
chr12:39486109-39486590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
50-537
               

               
Cow position:
               
chr12:16359553-16360038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
51-219
               

               
Cow position:
               
chr12:31605245-31605072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
111, 39
               

               
Conread position:
               
51-220
               

               
Cow position:
               
chr12:26949637-26949468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 125
               

               
Conread position:
               
51-234
               

               
Cow position:
               
chr12:26203544-26203726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 112
               

               
Conread position:
               
51-237
               

               
Cow position:
               
chr12:7055605-7055426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
51-243
               

               
Cow position:
               
chr12:26777472-26777282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
51-264
               

               
Cow position:
               
chr12:3880579-3880359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
51-269
               

               
Cow position:
               
chr12:29502291-29502514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
51-424
               

               
Cow position:
               
chr12:34673649-34673290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
51-462
               

               
Cow position:
               
chr12:2286261-2286669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 140
               

               
Conread position:
               
51-535
               

               
Cow position:
               
chr12:44622037-44622528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
51-551
               

               
Cow position:
               
chr12:40910610-40910102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
52-220
               

               
Cow position:
               
chr12:11102184-11102356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
52-220
               

               
Cow position:
               
chr12:22201455-22201285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
52-410
               

               
Cow position:
               
chr12:42954215-42953864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 50
               

               
Conread position:
               
52-478
               

               
Cow position:
               
chr12:30753408-30753825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
53-260
               

               
Cow position:
               
chr12:4593777-4593994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
53-496
               

               
Cow position:
               
chr12:33323816-33323365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
53-525
               

               
Cow position:
               
chr12:43788712-43789184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
25, 172
               

               
Conread position:
               
53-527
               

               
Cow position:
               
chr12:30170345-30170812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 148
               

               
Conread position:
               
53-533
               

               
Cow position:
               
chr12:1006147-1005684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
408, 19
               

               
Conread position:
               
53-549
               

               
Cow position:
               
chr12:42181459-42180947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 156
               

               
Conread position:
               
53-552
               

               
Cow position:
               
chr12:1889906-1889393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 130
               

               
Conread position:
               
54-225
               

               
Cow position:
               
chr12:34491248-34491082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
54-237
               

               
Cow position:
               
chr12:25529715-25529903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
54-265
               

               
Cow position:
               
chr12:17472537-17472332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
25, 119
               

               
Conread position:
               
54-456
               

               
Cow position:
               
chr12:29995779-29995383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 137
               

               
Conread position:
               
54-524
               

               
Cow position:
               
chr12:11056559-11057023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 216
               

               
Conread position:
               
55-405
               

               
Cow position:
               
chr12:20312482-20312142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
55-418
               

               
Cow position:
               
chr12:45814580-45814218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
55-453
               

               
Cow position:
               
chr12:30605472-30605087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 178
               

               
Conread position:
               
55-529
               

               
Cow position:
               
chr12:30596147-30596612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 240
               

               
Conread position:
               
55-531
               

               
Cow position:
               
chr12:24559036-24559504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 207
               

               
Conread position:
               
56-194
               

               
Cow position:
               
chr12:23909052-23908913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
56-195
               

               
Cow position:
               
chr12:39356999-39357144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
56-205
               

               
Cow position:
               
chr12:23446114-23446256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
56-215
               

               
Cow position:
               
chr12:20283583-20283751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 129
               

               
Conread position:
               
56-217
               

               
Cow position:
               
chr12:3600211-3600052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
56-220
               

               
Cow position:
               
chr12:27987260-27987424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
56-260
               

               
Cow position:
               
chr12:747925-748127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
56-260
               

               
Cow position:
               
chr12:27039081-27038877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
56-264
               

               
Cow position:
               
chr12:12017559-12017773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
56-265
               

               
Cow position:
               
chr12:1885407-1885193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
56-266
               

               
Cow position:
               
chr12:19872123-19872322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
22, 102
               

               
Conread position:
               
56-385
               

               
Cow position:
               
chr12:3568632-3568952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
56-401
               

               
Cow position:
               
chr12:20326456-20326801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
56-411
               

               
Cow position:
               
chr12:18550578-18550918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
56-411
               

               
Cow position:
               
chr12:31060298-31059946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
26, 196
               

               
Conread position:
               
56-448
               

               
Cow position:
               
chr12:29484206-29483812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 128
               

               
Conread position:
               
56-452
               

               
Cow position:
               
chr12:7977732-7978115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
56-456
               

               
Cow position:
               
chr12:19691550-19691152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
56-461
               

               
Cow position:
               
chr12:42254343-42254753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 121
               

               
Conread position:
               
56-504
               

               
Cow position:
               
chr12:19154926-19154480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
56-517
               

               
Cow position:
               
chr12:4370918-4371398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
56-527
               

               
Cow position:
               
chr12:35771348-35770864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 251
               

               
Conread position:
               
56-544
               

               
Cow position:
               
chr12:30745398-30745894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 115
               

               
Conread position:
               
56-548
               

               
Cow position:
               
chr12:41216744-41217250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
22, 196
               

               
Conread position:
               
56-549
               

               
Cow position:
               
chr12:19508887-19508384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 240
               

               
Conread position:
               
56-549
               

               
Cow position:
               
chr12:31529977-31530476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
56-551
               

               
Cow position:
               
chr12:15938582-15938088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
56-552
               

               
Cow position:
               
chr12:26782566-26783057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 217
               

               
Conread position:
               
56-552
               

               
Cow position:
               
chr12:27803362-27802877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 45
               

               
Conread position:
               
57-426
               

               
Cow position:
               
chr12:21246840-21246469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 241
               

               
Conread position:
               
57-527
               

               
Cow position:
               
chr12:17079944-17080426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 101
               

               
Conread position:
               
57-537
               

               
Cow position:
               
chr12:19125141-19124663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
58-377
               

               
Cow position:
               
chr12:45065521-45065824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
59-222
               

               
Cow position:
               
chr12:27717869-27718023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
59-256
               

               
Cow position:
               
chr12:24089847-24089642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 172
               

               
Conread position:
               
59-266
               

               
Cow position:
               
chr12:17495504-17495296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
19, 114
               

               
Conread position:
               
59-549
               

               
Cow position:
               
chr12:6469352-6468892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
60-264
               

               
Cow position:
               
chr12:30728551-30728342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
60-335
               

               
Cow position:
               
chr12:21584704-21584980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 216
               

               
Conread position:
               
60-403
               

               
Cow position:
               
chr12:34274154-34274493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
5, 115
               

               
Conread position:
               
61-527
               

               
Cow position:
               
chr12:30919125-30919594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 29
               

               
Conread position:
               
61-549
               

               
Cow position:
               
chr12:7884965-7884496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
62-552
               

               
Cow position:
               
chr12:7960872-7960401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
16, 42
               

               
Conread position:
               
63-412
               

               
Cow position:
               
chr12:3076931-3076589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 216
               

               
Conread position:
               
64-213
               

               
Cow position:
               
chr12:38678394-38678544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
130, 31
               

               
Conread position:
               
64-441
               

               
Cow position:
               
chr12:33457843-33458214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
64-524
               

               
Cow position:
               
chr12:41083761-41084202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 46
               

               
Conread position:
               
64-525
               

               
Cow position:
               
chr12:29448337-29448783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
15, 217
               

               
Conread position:
               
65-220
               

               
Cow position:
               
chr12:20260868-20260713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
65-222
               

               
Cow position:
               
chr12:27573325-27573164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
65-240
               

               
Cow position:
               
chr12:7108884-7109055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
65-263
               

               
Cow position:
               
chr12:14132049-14131852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
6, 167
               

               
Conread position:
               
65-264
               

               
Cow position:
               
chr12:6687565-6687755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
65-265
               

               
Cow position:
               
chr12:34103440-34103239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
13, 130
               

               
Conread position:
               
65-342
               

               
Cow position:
               
chr12:13112235-13112511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
160, 116
               

               
Conread position:
               
65-349
               

               
Cow position:
               
chr12:28650653-28650932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
153, 37
               

               
Conread position:
               
65-359
               

               
Cow position:
               
chr12:29411788-29411504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 22
               

               
Conread position:
               
65-409
               

               
Cow position:
               
chr12:3055830-3056167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 160
               

               
Conread position:
               
65-438
               

               
Cow position:
               
chr12:8869186-8868818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
65-443
               

               
Cow position:
               
chr12:15530761-15531123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 37
               

               
Conread position:
               
65-449
               

               
Cow position:
               
chr12:731229-730864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 50
               

               
Conread position:
               
65-458
               

               
Cow position:
               
chr12:18769382-18768988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
14, 110
               

               
Conread position:
               
65-458
               

               
Cow position:
               
chr12:27563141-27562758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
65-462
               

               
Cow position:
               
chr12:7000893-7000517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 36
               

               
Conread position:
               
65-469
               

               
Cow position:
               
chr12:45820661-45820271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 70
               

               
Conread position:
               
65-523
               

               
Cow position:
               
chr12:8943524-8943059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 74
               

               
Conread position:
               
65-524
               

               
Cow position:
               
chr12:25619683-25619240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
65-527
               

               
Cow position:
               
chr12:6411032-6410576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 106
               

               
Conread position:
               
65-527
               

               
Cow position:
               
chr12:37994029-37993581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 36
               

               
Conread position:
               
65-528
               

               
Cow position:
               
chr12:30805551-30806014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 98
               

               
Conread position:
               
65-542
               

               
Cow position:
               
chr12:20479616-20479168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
65-549
               

               
Cow position:
               
chr12:30590471-30590951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 38
               

               
Conread position:
               
66-215
               

               
Cow position:
               
chr12:5166328-5166474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
66-220
               

               
Cow position:
               
chr12:4190870-4191019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
66-225
               

               
Cow position:
               
chr12:36204195-36204040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
66-229
               

               
Cow position:
               
chr12:4518502-4518335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
66-236
               

               
Cow position:
               
chr12:3093297-3093126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
66-257
               

               
Cow position:
               
chr12:32285818-32286012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
66-264
               

               
Cow position:
               
chr12:5863276-5863459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
66-265
               

               
Cow position:
               
chr12:12939233-12939029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
66-265
               

               
Cow position:
               
chr12:15231984-15232182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
66-266
               

               
Cow position:
               
chr12:17708412-17708616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
66-268
               

               
Cow position:
               
chr12:36954678-36954476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
149, 105
               

               
Conread position:
               
66-336
               

               
Cow position:
               
chr12:44766780-44767038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
66-350
               

               
Cow position:
               
chr12:31218154-31218436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
66-460
               

               
Cow position:
               
chr12:6720019-6720413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
66-475
               

               
Cow position:
               
chr12:6210460-6210058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 107
               

               
Conread position:
               
66-525
               

               
Cow position:
               
chr12:21922133-21922597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
66-529
               

               
Cow position:
               
chr12:16543873-16543435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
66-534
               

               
Cow position:
               
chr12:41159294-41159747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 35
               

               
Conread position:
               
66-537
               

               
Cow position:
               
chr12:17031318-17031779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 88
               

               
Conread position:
               
67-263
               

               
Cow position:
               
chr12:15622758-15622560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
91, 45
               

               
Conread position:
               
68-225
               

               
Cow position:
               
chr12:6960140-6960297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
68-241
               

               
Cow position:
               
chr12:21052511-21052337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
68-263
               

               
Cow position:
               
chr12:40307395-40307590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 106
               

               
Conread position:
               
68-264
               

               
Cow position:
               
chr12:1284761-1284566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
11, 105
               

               
Conread position:
               
68-528
               

               
Cow position:
               
chr12:42167345-42167781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 33
               

               
Conread position:
               
68-532
               

               
Cow position:
               
chr12:23983367-23983811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 37
               

               
Conread position:
               
68-552
               

               
Cow position:
               
chr12:42160856-42160373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
69-225
               

               
Cow position:
               
chr12:17486437-17486286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
69-256
               

               
Cow position:
               
chr12:7882021-7881831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
69-263
               

               
Cow position:
               
chr12:1848838-1848642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
69-310
               

               
Cow position:
               
chr12:1444048-1443803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
149, 234
               

               
Conread position:
               
69-488
               

               
Cow position:
               
chr12:31198468-31198870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
146, 49
               

               
Conread position:
               
70-268
               

               
Cow position:
               
chr12:30688039-30688239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
150, 139
               

               
Conread position:
               
71-524
               

               
Cow position:
               
chr12:34007001-34007456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 188
               

               
Conread position:
               
74-228
               

               
Cow position:
               
chr12:6077934-6077783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
74-525
               

               
Cow position:
               
chr12:37733070-37732638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
76-228
               

               
Cow position:
               
chr12:43551577-43551435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
76-452
               

               
Cow position:
               
chr12:11109477-11109832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
142, 15
               

               
Conread position:
               
77-198
               

               
Cow position:
               
chr12:9892809-9892688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
77-220
               

               
Cow position:
               
chr12:20623683-20623540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
77-220
               

               
Cow position:
               
chr12:20795615-20795754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
64, 70
               

               
Conread position:
               
77-229
               

               
Cow position:
               
chr12:25550573-25550426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
77-264
               

               
Cow position:
               
chr12:10162247-10162060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
148, 105
               

               
Conread position:
               
77-264
               

               
Cow position:
               
chr12:12983162-12982976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
152, 24
               

               
Conread position:
               
77-264
               

               
Cow position:
               
chr12:40824383-40824189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
77-266
               

               
Cow position:
               
chr12:25805402-25805215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
147, 97
               

               
Conread position:
               
77-269
               

               
Cow position:
               
chr12:22473671-22473863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
141, 58
               

               
Conread position:
               
77-299
               

               
Cow position:
               
chr12:40270378-40270164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
140, 72
               

               
Conread position:
               
77-346
               

               
Cow position:
               
chr12:32391553-32391820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
117, 80
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr12:25455822-25456094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 196
               

               
Conread position:
               
77-363
               

               
Cow position:
               
chr12:245982-245706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
169, 71
               

               
Conread position:
               
77-363
               

               
Cow position:
               
chr12:5899235-5899514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
77-385
               

               
Cow position:
               
chr12:3510273-3510572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 25
               

               
Conread position:
               
77-389
               

               
Cow position:
               
chr12:6164321-6164007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
77-390
               

               
Cow position:
               
chr12:26317167-26317481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 81
               

               
Conread position:
               
77-448
               

               
Cow position:
               
chr12:5905765-5906130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 81
               

               
Conread position:
               
77-449
               

               
Cow position:
               
chr12:46314987-46314629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
77-452
               

               
Cow position:
               
chr12:14523632-14524009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
174, 145
               

               
Conread position:
               
77-461
               

               
Cow position:
               
chr12:3950643-3950259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 206
               

               
Conread position:
               
77-462
               

               
Cow position:
               
chr12:41473803-41474177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 84
               

               
Conread position:
               
77-466
               

               
Cow position:
               
chr12:18040883-18040516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
77-475
               

               
Cow position:
               
chr12:22881760-22882156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 24
               

               
Conread position:
               
77-516
               

               
Cow position:
               
chr12:31532693-31532260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 29
               

               
Conread position:
               
77-522
               

               
Cow position:
               
chr12:9914497-9914936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
77-522
               

               
Cow position:
               
chr12:48415803-48415365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
77-527
               

               
Cow position:
               
chr12:5714337-5714778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 24
               

               
Conread position:
               
77-532
               

               
Cow position:
               
chr12:20777221-20776764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 25
               

               
Conread position:
               
77-544
               

               
Cow position:
               
chr12:19715319-19714883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 24
               

               
Conread position:
               
77-551
               

               
Cow position:
               
chr12:16605938-16605485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 86
               

               
Conread position:
               
78-219
               

               
Cow position:
               
chr12:36049107-36049247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
78-232
               

               
Cow position:
               
chr12:23379283-23379434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 49
               

               
Conread position:
               
78-251
               

               
Cow position:
               
chr12:29762890-29762715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
78-524
               

               
Cow position:
               
chr12:32169245-32169703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
78-533
               

               
Cow position:
               
chr12:36012899-36012446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
143, 26
               

               
Conread position:
               
79-220
               

               
Cow position:
               
chr12:27888989-27888848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
79-222
               

               
Cow position:
               
chr12:32129107-32129249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
79-245
               

               
Cow position:
               
chr12:33737787-33737622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
154, 81
               

               
Conread position:
               
79-264
               

               
Cow position:
               
chr12:4134375-4134564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
79-268
               

               
Cow position:
               
chr12:36042023-36041832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
79-409
               

               
Cow position:
               
chr12:41091239-41091568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 191
               

               
Conread position:
               
79-527
               

               
Cow position:
               
chr12:15358038-15358503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 219
               

               
Conread position:
               
79-537
               

               
Cow position:
               
chr12:36020766-36020312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
200, 89
               

               
Conread position:
               
80-205
               

               
Cow position:
               
chr12:24206590-24206718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 5
               

               
Conread position:
               
80-220
               

               
Cow position:
               
chr12:33875836-33875699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
80-257
               

               
Cow position:
               
chr12:8922077-8921897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
146, 5
               

               
Conread position:
               
80-373
               

               
Cow position:
               
chr12:35707214-35706931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
187, 12
               

               
Conread position:
               
80-443
               

               
Cow position:
               
chr12:26223274-26222920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 38
               

               
Conread position:
               
80-443
               

               
Cow position:
               
chr12:32714752-32715113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
80-524
               

               
Cow position:
               
chr12:40110100-40110514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
138, 78
               

               
Conread position:
               
81-268
               

               
Cow position:
               
chr12:18081831-18081650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
146, 84
               

               
Conread position:
               
81-452
               

               
Cow position:
               
chr12:28582780-28582432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 84
               

               
Conread position:
               
81-456
               

               
Cow position:
               
chr12:44518023-44517656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 47
               

               
Conread position:
               
81-534
               

               
Cow position:
               
chr12:19502708-19502248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 175
               

               
Conread position:
               
81-546
               

               
Cow position:
               
chr12:1504739-1505175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
141, 20
               

               
Conread position:
               
82-262
               

               
Cow position:
               
chr12:7131880-7131705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 89
               

               
Conread position:
               
82-349
               

               
Cow position:
               
chr12:41214605-41214346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
142, 19
               

               
Conread position:
               
83-527
               

               
Cow position:
               
chr12:22285386-22284962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 18
               

               
Conread position:
               
84-222
               

               
Cow position:
               
chr12:23723440-23723578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
84-224
               

               
Cow position:
               
chr12:6955490-6955630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
84-360
               

               
Cow position:
               
chr12:22047185-22047456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
155, 17
               

               
Conread position:
               
84-394
               

               
Cow position:
               
chr12:12178636-12178943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 104
               

               
Conread position:
               
84-525
               

               
Cow position:
               
chr12:37727862-37728287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 59
               

               
Conread position:
               
85-452
               

               
Cow position:
               
chr12:18388566-18388213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 86
               

               
Conread position:
               
87-225
               

               
Cow position:
               
chr12:38036772-38036910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
88-303
               

               
Cow position:
               
chr12:31386984-31386767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
130, 211
               

               
Conread position:
               
88-324
               

               
Cow position:
               
chr12:18417282-18417523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
88-462
               

               
Cow position:
               
chr12:25320642-25321002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 104
               

               
Conread position:
               
88-546
               

               
Cow position:
               
chr12:5797825-5797409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
132, 83
               

               
Conread position:
               
89-399
               

               
Cow position:
               
chr12:8104524-8104231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 105
               

               
Conread position:
               
89-439
               

               
Cow position:
               
chr12:17716803-17717127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
91-362
               

               
Cow position:
               
chr12:12700053-12699776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 82
               

               
Conread position:
               
91-377
               

               
Cow position:
               
chr12:8710553-8710824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
133, 80
               

               
Conread position:
               
92-237
               

               
Cow position:
               
chr12:34429420-34429278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
126, 68
               
UCSC Genome Browser

               
Conread position:
               
92-359
               

               
Cow position:
               
chr12:44846116-44846371 (view  custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
126, 57
               
UCSC Genome Browser

               
               
               
Conread position:
92-527

               
               
               
Cow position:
chr12:34332829-34333276 (view  custom track)

               
               
               
Alignm length:
463

               
               
               
Alignm identity:
313

               
               
               
Alignm E-value:
8.00141e-43

               
               
               
Alignm gaps (pig, cow):
125, 52
UCSC Genome Browser

               
               
               
Conread position:
93-208

               
               
               
Cow position:
chr12:15703991-15703876 (view  custom track)

               
               
               
Alignm length:
116

               
               
               
Alignm identity:
92

               
               
               
Alignm E-value:
3e-23

               
               
               
Alignm gaps (pig, cow):
0, 0

               
               
               Conread position:93-496
               
               
               Cow position:chr12:30662226-30661820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:95-264
               
               
               Cow position:chr12:42698497-42698329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:95-265
               
               
               Cow position:chr12:35354510-35354680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 141

               
               
               Conread position:95-354
               
               
               Cow position:chr12:34089558-34089824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):46, 204

               
               
               Conread position:95-494
               
               
               Cow position:chr12:43942206-43942599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:95-524
               
               
               Cow position:chr12:17625092-17624679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):380, 79

               
               
               Conread position:96-272
               
               
               Cow position:chr12:23154740-23154561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):63, 76

               
               
               Conread position:96-524
               
               
               Cow position:chr12:42879433-42879856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 63

               
               
               Conread position:96-527
               
               
               Cow position:chr12:39465305-39465725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 172

               
               
               Conread position:97-263
               
               
               Cow position:chr12:31841165-31841334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:97-454
               
               
               Cow position:chr12:28257318-28256975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:98-525
               
               
               Cow position:chr12:28559024-28559442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):131, 139

               
               
               Conread position:99-456
               
               
               Cow position:chr12:25177864-25177516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:99-523
               
               
               Cow position:chr12:12331771-12331372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:293
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:100-424
               
               
               Cow position:chr12:8595621-8595950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):121, 65

               
               
               Conread position:101-347
               
               
               Cow position:chr12:17702501-17702253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 183

               
               
               Conread position:104-525
               
               
               Cow position:chr12:42283102-42282681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 56

               
               
               Conread position:105-372
               
               
               Cow position:chr12:24107802-24107547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:106-264
               
               
               Cow position:chr12:28804730-28804889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:106-334
               
               
               Cow position:chr12:3994686-3994918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):117, 206

               
               
               Conread position:107-264
               
               
               Cow position:chr12:29162073-29161920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):114, 59

               
               
               Conread position:107-393
               
               
               Cow position:chr12:1487775-1488066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 88

               
               
               Conread position:107-420
               
               
               Cow position:chr12:45363095-45363407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):126, 115

               
               
               Conread position:107-462
               
               
               Cow position:chr12:18766243-18765883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 87

               
               
               Conread position:108-335
               
               
               Cow position:chr12:4182957-4182730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 202

               
               
               Conread position:109-456
               
               
               Cow position:chr12:5940083-5940426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 160

               
               
               Conread position:109-524
               
               
               Cow position:chr12:5635708-5635295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 79

               
               
               Conread position:110-456
               
               
               Cow position:chr12:17774546-17774876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:112-400
               
               
               Cow position:chr12:40029012-40028728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):106, 67

               
               
               Conread position:114-412
               
               
               Cow position:chr12:38484653-38484356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:115-264
               
               
               Cow position:chr12:6226901-6226757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):109, 51

               
               
               Conread position:116-421
               
               
               Cow position:chr12:29915729-29915420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):103, 196

               
               
               Conread position:116-456
               
               
               Cow position:chr12:23797850-23798181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:116-462
               
               
               Cow position:chr12:15240977-15240650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):111, 55

               
               
               Conread position:116-537
               
               
               Cow position:chr12:24024044-24023643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:288
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:116-541
               
               
               Cow position:chr12:35780180-35779744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 153

               
               
               Conread position:116-552
               
               
               Cow position:chr12:44602250-44602692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):178, 108

               
               
               Conread position:117-469
               
               
               Cow position:chr12:28213266-28213606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:122-350
               
               
               Cow position:chr12:19372353-19372131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):101, 138

               
               
               Conread position:122-410
               
               
               Cow position:chr12:20075340-20075615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):96, 69

               
               
               Conread position:123-389
               
               
               Cow position:chr12:37190072-37190330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):143, 13

               
               
               Conread position:123-448
               
               
               Cow position:chr12:24211170-24211481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 136

               
               
               Conread position:123-516
               
               
               Cow position:chr12:23574524-23574919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):92, 49

               
               
               Conread position:124-547
               
               
               Cow position:chr12:4093999-4093591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:125-462
               
               
               Cow position:chr12:29770817-29770491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 43

               
               
               Conread position:126-417
               
               
               Cow position:chr12:26328287-26327988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 160

               
               
               Conread position:126-547
               
               
               Cow position:chr12:34161174-34161583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:128-468
               
               
               Cow position:chr12:28471398-28471741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 32

               
               
               Conread position:129-264
               
               
               Cow position:chr12:4809065-4809201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:129-379
               
               
               Cow position:chr12:12031075-12030823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:129-537
               
               
               Cow position:chr12:22287038-22287438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:130-524
               
               
               Cow position:chr12:41642196-41642570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:131-359
               
               
               Cow position:chr12:30476239-30476467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):93, 179

               
               
               Conread position:131-437
               
               
               Cow position:chr12:35377961-35378264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 139

               
               
               Conread position:132-411
               
               
               Cow position:chr12:20071822-20071536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 199

               
               
               Conread position:132-415
               
               
               Cow position:chr12:13156436-13156708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):6, 148

               
               
               Conread position:132-444
               
               
               Cow position:chr12:24577491-24577182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):87, 113

               
               
               Conread position:132-520
               
               
               Cow position:chr12:35669703-35669319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:278
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:133-462
               
               
               Cow position:chr12:15162914-15163227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:133-550
               
               
               Cow position:chr12:18103830-18103431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):330, 62

               
               
               Conread position:134-517
               
               
               Cow position:chr12:42421459-42421082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:134-532
               
               
               Cow position:chr12:4162606-4162208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 117

               
               
               Conread position:135-531
               
               
               Cow position:chr12:1030746-1031128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 68

               
               
               Conread position:136-390
               
               
               Cow position:chr12:38454685-38454922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:136-537
               
               
               Cow position:chr12:29899670-29899250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:284
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):82, 140

               
               
               Conread position:138-509
               
               
               Cow position:chr12:24662884-24663262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:140-349
               
               
               Cow position:chr12:25820662-25820455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:140-412
               
               
               Cow position:chr12:3906239-3906511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):86, 156

               
               
               Conread position:140-438
               
               
               Cow position:chr12:18964158-18963864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):81, 28

               
               
               Conread position:141-417
               
               
               Cow position:chr12:30802983-30803257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 159

               
               
               Conread position:141-505
               
               
               Cow position:chr12:28748706-28749082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):82, 64

               
               
               Conread position:141-539
               
               
               Cow position:chr12:27037677-27037287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 127

               
               
               Conread position:144-349
               
               
               Cow position:chr12:18021368-18021567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:144-527
               
               
               Cow position:chr12:4596224-4596633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):74, 163

               
               
               Conread position:146-548
               
               
               Cow position:chr12:33129041-33129436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 122

               
               
               Conread position:148-450
               
               
               Cow position:chr12:45680046-45680353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 157

               
               
               Conread position:150-537
               
               
               Cow position:chr12:10575379-10575773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:150-547
               
               
               Cow position:chr12:31947904-31948289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:151-523
               
               
               Cow position:chr12:45965475-45965114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:154-524
               
               
               Cow position:chr12:33851140-33851513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:155-452
               
               
               Cow position:chr12:22539987-22540285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:155-532
               
               
               Cow position:chr12:30210264-30210635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:156-543
               
               
               Cow position:chr12:24165358-24165751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:159-532
               
               
               Cow position:chr12:25027996-25027592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):75, 285

               
               
               Conread position:159-537
               
               
               Cow position:chr12:15204620-15205002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:159-540
               
               
               Cow position:chr12:32413297-32413683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:159-551
               
               
               Cow position:chr12:42162829-42163226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:160-526
               
               
               Cow position:chr12:13643023-13643394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):192, 76

               
               
               Conread position:160-527
               
               
               Cow position:chr12:26218037-26217667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):106, 121

               
               
               Conread position:160-534
               
               
               Cow position:chr12:4768715-4769085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:161-550
               
               
               Cow position:chr12:25280706-25280322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):14, 62

               
               
               Conread position:163-438
               
               
               Cow position:chr12:15763120-15762851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:163-462
               
               
               Cow position:chr12:25452654-25452359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):115, 51

               
               
               Conread position:164-516
               
               
               Cow position:chr12:30194500-30194842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:164-534
               
               
               Cow position:chr12:36544858-36544478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 269

               
               
               Conread position:165-527
               
               
               Cow position:chr12:12599855-12600216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:165-541
               
               
               Cow position:chr12:25917471-25917106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):59, 103

               
               
               Conread position:167-516
               
               
               Cow position:chr12:19401010-19400667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):125, 54

               
               
               Conread position:170-537
               
               
               Cow position:chr12:17879505-17879135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:175-527
               
               
               Cow position:chr12:33976005-33976363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:175-549
               
               
               Cow position:chr12:7299666-7299279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:179-412
               
               
               Cow position:chr12:10491077-10491309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:181-527
               
               
               Cow position:chr12:28131392-28131751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:182-527
               
               
               Cow position:chr12:38774431-38774085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 116

               
               
               Conread position:182-532
               
               
               Cow position:chr12:11587576-11587936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:183-393
               
               
               Cow position:chr12:29921973-29921765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:185-456
               
               
               Cow position:chr12:6485395-6485130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:187-527
               
               
               Cow position:chr12:28789863-28790217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:190-446
               
               
               Cow position:chr12:23855652-23855904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:191-547
               
               
               Cow position:chr12:12637370-12637008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):24, 119

               
               
               Conread position:192-449
               
               
               Cow position:chr12:19507451-19507712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:194-524
               
               
               Cow position:chr12:15415052-15414714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 232

               
               
               Conread position:195-548
               
               
               Cow position:chr12:1998978-1998619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:196-508
               
               
               Cow position:chr12:35123715-35124033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:196-527
               
               
               Cow position:chr12:15050797-15050465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:196-550
               
               
               Cow position:chr12:23916665-23917019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:197-437
               
               
               Cow position:chr12:25110612-25110378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:197-522
               
               
               Cow position:chr12:15703673-15703340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:199-461
               
               
               Cow position:chr12:20636333-20636066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:202-552
               
               
               Cow position:chr12:4719774-4720126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:205-414
               
               
               Cow position:chr12:18420302-18420508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 71

               
               
               Conread position:205-535
               
               
               Cow position:chr12:15103096-15103445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:205-552
               
               
               Cow position:chr12:42784139-42784487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:207-418
               
               
               Cow position:chr12:9894616-9894826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:209-453
               
               
               Cow position:chr12:25188023-25188267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:210-395
               
               
               Cow position:chr12:4790731-4790554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:210-532
               
               
               Cow position:chr12:36790974-36790648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:211-449
               
               
               Cow position:chr12:41216046-41215810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 96

               
               
               Conread position:212-537
               
               
               Cow position:chr12:37170104-37169779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 69

               
               
               Conread position:212-551
               
               
               Cow position:chr12:22485659-22485999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:213-456
               
               
               Cow position:chr12:45090518-45090270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:217-462
               
               
               Cow position:chr12:46120983-46120743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):148, 9

               
               
               Conread position:217-524
               
               
               Cow position:chr12:3623539-3623848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 83

               
               
               Conread position:217-539
               
               
               Cow position:chr12:13988217-13988549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):223, 72

               
               
               Conread position:218-514
               
               
               Cow position:chr12:31517320-31517036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):106, 49

               
               
               Conread position:218-535
               
               
               Cow position:chr12:15039129-15038817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):219, 94

               
               
               Conread position:220-519
               
               
               Cow position:chr12:26777342-26777042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:223-544
               
               
               Cow position:chr12:9767022-9766702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:225-522
               
               
               Cow position:chr12:24116510-24116218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 55

               
               
               Conread position:225-527
               
               
               Cow position:chr12:23446576-23446876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):231, 39

               
               
               Conread position:225-530
               
               
               Cow position:chr12:26575739-26576055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 218

               
               
               Conread position:225-548
               
               
               Cow position:chr12:33298044-33298363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:225-549
               
               
               Cow position:chr12:16670119-16670444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:225-550
               
               
               Cow position:chr12:7539938-7539604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 186

               
               
               Conread position:227-447
               
               
               Cow position:chr12:47194158-47193951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 35

               
               
               Conread position:227-526
               
               
               Cow position:chr12:24032357-24032647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 39

               
               
               Conread position:227-533
               
               
               Cow position:chr12:44203127-44202827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 36

               
               
               Conread position:227-552
               
               
               Cow position:chr12:7110056-7110392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):226, 72

               
               
               Conread position:232-516
               
               
               Cow position:chr12:25809287-25809583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:234-527
               
               
               Cow position:chr12:38852167-38851863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 46

               
               
               Conread position:236-551
               
               
               Cow position:chr12:17269664-17269988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:239-433
               
               
               Cow position:chr12:3092705-3092521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:244-524
               
               
               Cow position:chr12:1333101-1333374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:244-548
               
               
               Cow position:chr12:25192924-25193219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 36

               
               
               Conread position:245-548
               
               
               Cow position:chr12:24152211-24152521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:248-551
               
               
               Cow position:chr12:12531197-12530893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):195, 27

               
               
               Conread position:250-419
               
               
               Cow position:chr12:18023555-18023380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:250-546
               
               
               Cow position:chr12:37008825-37008530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:278-527
               
               
               Cow position:chr12:5554429-5554177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 26

               
               
               Conread position:278-547
               
               
               Cow position:chr12:27176540-27176818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:278-547
               
               
               Cow position:chr12:27192464-27192186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:279-527
               
               
               Cow position:chr12:19261101-19261355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 25

               
               
               Conread position:280-386
               
               
               Cow position:chr12:28778399-28778502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:280-443
               
               
               Cow position:chr12:30819150-30819313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):26, 22

               
               
               Conread position:280-461
               
               
               Cow position:chr12:39591736-39591551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:280-526
               
               
               Cow position:chr12:37514374-37514122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 24

               
               
               Conread position:280-527
               
               
               Cow position:chr12:18583084-18582839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 24

               
               
               Conread position:280-531
               
               
               Cow position:chr12:3371635-3371384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):161, 24

               
               
               Conread position:280-532
               
               
               Cow position:chr12:5680589-5680830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:280-546
               
               
               Cow position:chr12:11659834-11660106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 109

               
               
               Conread position:281-433
               
               
               Cow position:chr12:9865060-9865211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 28

               
               
               Conread position:282-462
               
               
               Cow position:chr12:33319757-33319580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:282-525
               
               
               Cow position:chr12:3615911-3616141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:282-527
               
               
               Cow position:chr12:6687802-6688045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 11

               
               
               Conread position:282-537
               
               
               Cow position:chr12:42285879-42286135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):164, 27

               
               
               Conread position:284-474
               
               
               Cow position:chr12:6235196-6235389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:284-526
               
               
               Cow position:chr12:30414035-30413799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:286-527
               
               
               Cow position:chr12:18514015-18513766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:286-539
               
               
               Cow position:chr12:25805216-25804972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 18

               
               
               Conread position:289-524
               
               
               Cow position:chr12:45002152-45001914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):178, 131

               
               
               Conread position:290-460
               
               
               Cow position:chr12:23644887-23644717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:291-529
               
               
               Cow position:chr12:33948821-33949062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:291-537
               
               
               Cow position:chr12:24273442-24273204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):104, 80

               
               
               Conread position:291-546
               
               
               Cow position:chr12:5135149-5135414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):22, 89

               
               
               Conread position:292-552
               
               
               Cow position:chr12:5839738-5839479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):119, 209

               
               
               Conread position:294-527
               
               
               Cow position:chr12:17252278-17252043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 63

               
               
               Conread position:294-552
               
               
               Cow position:chr12:13911659-13911395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:295-512
               
               
               Cow position:chr12:9514282-9514513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:297-552
               
               
               Cow position:chr12:12232806-12233066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):99, 78

               
               
               Conread position:298-441
               
               
               Cow position:chr12:15641184-15641040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:298-461
               
               
               Cow position:chr12:7457617-7457458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:298-552
               
               
               Cow position:chr12:29675215-29674957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:299-525
               
               
               Cow position:chr12:28885152-28884940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-515
               
               
               Cow position:chr12:6484067-6484276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:302-524
               
               
               Cow position:chr12:40158094-40157871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):159, 66

               
               
               Conread position:303-471
               
               
               Cow position:chr12:4797229-4797396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:304-527
               
               
               Cow position:chr12:45092376-45092600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:304-535
               
               
               Cow position:chr12:26151530-26151313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):131, 67

               
               
               Conread position:304-549
               
               
               Cow position:chr12:10763188-10763426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:305-453
               
               
               Cow position:chr12:45168088-45167941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:305-546
               
               
               Cow position:chr12:14222913-14223159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):146, 25

               
               
               Conread position:306-503
               
               
               Cow position:chr12:3880048-3879854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):195, 148

               
               
               Conread position:306-536
               
               
               Cow position:chr12:15495830-15496066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:306-537
               
               
               Cow position:chr12:26750021-26749780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 115

               
               
               Conread position:306-548
               
               
               Cow position:chr12:40881978-40881743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 86

               
               
               Conread position:309-449
               
               
               Cow position:chr12:19274462-19274324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:309-452
               
               
               Cow position:chr12:46464132-46463992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:309-453
               
               
               Cow position:chr12:4793132-4793276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:309-462
               
               
               Cow position:chr12:15260698-15260849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:309-516
               
               
               Cow position:chr12:47267374-47267159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:309-527
               
               
               Cow position:chr12:9129844-9130063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):144, 87

               
               
               Conread position:309-532
               
               
               Cow position:chr12:4594436-4594664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 10

               
               
               Conread position:309-545
               
               
               Cow position:chr12:7902870-7902626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 136

               
               
               Conread position:309-546
               
               
               Cow position:chr12:48287758-48287528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:309-549
               
               
               Cow position:chr12:6206267-6206514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:309-549
               
               
               Cow position:chr12:29966040-29966290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:309-551
               
               
               Cow position:chr12:6188179-6187928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):132, 231

               
               
               Conread position:309-551
               
               
               Cow position:chr12:6754131-6754372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):151, 204

               
               
               Conread position:309-552
               
               
               Cow position:chr12:21780097-21780347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):144, 222

               
               
               Conread position:310-527
               
               
               Cow position:chr12:24167008-24166789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:310-527
               
               
               Cow position:chr12:29057325-29057550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:310-537
               
               
               Cow position:chr12:44901197-44901415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:310-545
               
               
               Cow position:chr12:44693151-44693375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:311-455
               
               
               Cow position:chr12:44916042-44916182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:311-520
               
               
               Cow position:chr12:15389008-15389223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:311-551
               
               
               Cow position:chr12:45039044-45039293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:312-471
               
               
               Cow position:chr12:27357326-27357486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):135, 31

               
               
               Conread position:312-531
               
               
               Cow position:chr12:29358115-29357903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):134, 63

               
               
               Conread position:312-551
               
               
               Cow position:chr12:18563101-18563343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 117

               
               
               Conread position:312-552
               
               
               Cow position:chr12:38155133-38154885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 117

               
               
               Conread position:321-527
               
               
               Cow position:chr12:10827732-10827946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:321-535
               
               
               Cow position:chr12:36261636-36261862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:321-537
               
               
               Cow position:chr12:43974240-43974464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 46

               
               
               Conread position:321-549
               
               
               Cow position:chr12:27385437-27385667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):81, 117

               
               
               Conread position:322-488
               
               
               Cow position:chr12:24186534-24186376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):157, 32

               
               
               Conread position:323-434
               
               
               Cow position:chr12:11333726-11333618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:323-449
               
               
               Cow position:chr12:7311329-7311456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:323-456
               
               
               Cow position:chr12:1766861-1766991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:323-456
               
               
               Cow position:chr12:3675578-3675447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:323-456
               
               
               Cow position:chr12:12912988-12912855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:323-462
               
               
               Cow position:chr12:6139631-6139489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:323-469
               
               
               Cow position:chr12:7920191-7920337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:323-520
               
               
               Cow position:chr12:24181098-24181296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):137, 29

               
               
               Conread position:323-522
               
               
               Cow position:chr12:45069438-45069229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:323-546
               
               
               Cow position:chr12:35241156-35240925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):132, 108

               
               
               Conread position:323-549
               
               
               Cow position:chr12:4954776-4955001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 94

               
               
               Conread position:324-468
               
               
               Cow position:chr12:45783766-45783623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:324-520
               
               
               Cow position:chr12:23939173-23939372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 60

               
               
               Conread position:324-524
               
               
               Cow position:chr12:25814097-25814314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:324-527
               
               
               Cow position:chr12:2734958-2734751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:325-546
               
               
               Cow position:chr12:35469496-35469275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):130, 104

               
               
               Conread position:325-552
               
               
               Cow position:chr12:45126902-45126675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 124

               
               
               Conread position:327-524
               
               
               Cow position:chr12:26147217-26147011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:327-532
               
               
               Cow position:chr12:43854847-43855054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):135, 44

               
               
               Conread position:327-533
               
               
               Cow position:chr12:22859420-22859616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):131, 45

               
               
               Conread position:327-535
               
               
               Cow position:chr12:24437682-24437463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:328-549
               
               
               Cow position:chr12:23714628-23714855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:329-429
               
               
               Cow position:chr12:19513070-19512970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:329-532
               
               
               Cow position:chr12:14986704-14986912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 106

               
               
               Conread position:329-535
               
               
               Cow position:chr12:48578798-48579003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:330-527
               
               
               Cow position:chr12:3586074-3586274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 173

               
               
               Conread position:330-537
               
               
               Cow position:chr12:1701849-1701646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:331-460
               
               
               Cow position:chr12:45014636-45014769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:332-451
               
               
               Cow position:chr12:27572282-27572163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:333-456
               
               
               Cow position:chr12:43860704-43860580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:333-469
               
               
               Cow position:chr12:42143119-42143254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:333-518
               
               
               Cow position:chr12:44542225-44542414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:334-527
               
               
               Cow position:chr12:29731274-29731471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:336-461
               
               
               Cow position:chr12:23696198-23696074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:336-535
               
               
               Cow position:chr12:29316501-29316294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:337-552
               
               
               Cow position:chr12:45782188-45782405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):8, 187

               
               
               Conread position:338-524
               
               
               Cow position:chr12:31841533-31841727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:339-475
               
               
               Cow position:chr12:19371925-19371789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:339-514
               
               
               Cow position:chr12:6480605-6480789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:339-552
               
               
               Cow position:chr12:19061541-19061319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):112, 40

               
               
               Conread position:340-534
               
               
               Cow position:chr12:29180639-29180841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:340-535
               
               
               Cow position:chr12:2964016-2964214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:340-552
               
               
               Cow position:chr12:6958185-6958406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:341-522
               
               
               Cow position:chr12:6465543-6465369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:152
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):177, 34

               
               
               Conread position:341-551
               
               
               Cow position:chr12:39150085-39149868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 88

               
               
               Conread position:341-552
               
               
               Cow position:chr12:24595951-24596151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:342-476
               
               
               Cow position:chr12:16434904-16434770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):113, 35

               
               
               Conread position:342-526
               
               
               Cow position:chr12:6666542-6666720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:344-516
               
               
               Cow position:chr12:41221039-41220864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 76

               
               
               Conread position:344-548
               
               
               Cow position:chr12:38804620-38804423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:344-550
               
               
               Cow position:chr12:43474730-43474939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 135

               
               
               Conread position:345-449
               
               
               Cow position:chr12:25198761-25198864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:345-527
               
               
               Cow position:chr12:3057056-3057249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:346-522
               
               
               Cow position:chr12:4801335-4801508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 108

               
               
               Conread position:347-524
               
               
               Cow position:chr12:24639608-24639785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):117, 54

               
               
               Conread position:347-526
               
               
               Cow position:chr12:26357398-26357208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 73

               
               
               Conread position:347-550
               
               
               Cow position:chr12:17250488-17250690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):179, 26

               
               
               Conread position:348-524
               
               
               Cow position:chr12:17273539-17273726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:349-524
               
               
               Cow position:chr12:35663938-35664114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:349-535
               
               
               Cow position:chr12:4512475-4512282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:156
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:349-535
               
               
               Cow position:chr12:20439282-20439094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:349-535
               
               
               Cow position:chr12:28699805-28699612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 72

               
               
               Conread position:349-548
               
               
               Cow position:chr12:6915199-6915408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 72

               
               
               Conread position:353-537
               
               
               Cow position:chr12:17490194-17490384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):101, 53

               
               
               Conread position:353-546
               
               
               Cow position:chr12:42951707-42951515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:354-524
               
               
               Cow position:chr12:38010107-38009927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):99, 156

               
               
               Conread position:354-532
               
               
               Cow position:chr12:17108139-17108319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:354-534
               
               
               Cow position:chr12:43582982-43583162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:354-535
               
               
               Cow position:chr12:25528580-25528394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):99, 154

               
               
               Conread position:354-543
               
               
               Cow position:chr12:22047904-22048101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 24

               
               
               Conread position:354-551
               
               
               Cow position:chr12:17702047-17701854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:354-552
               
               
               Cow position:chr12:11272846-11272646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):96, 176

               
               
               Conread position:355-516
               
               
               Cow position:chr12:38552175-38552342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:355-524
               
               
               Cow position:chr12:19007952-19007781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:355-552
               
               
               Cow position:chr12:31602841-31602636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):90, 172

               
               
               Conread position:356-452
               
               
               Cow position:chr12:18092454-18092550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:357-514
               
               
               Cow position:chr12:18130500-18130658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:357-535
               
               
               Cow position:chr12:19272706-19272522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:357-550
               
               
               Cow position:chr12:39735681-39735482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):85, 74

               
               
               Conread position:358-549
               
               
               Cow position:chr12:30042709-30042907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 181

               
               
               Conread position:358-552
               
               
               Cow position:chr12:38679033-38679233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:359-542
               
               
               Cow position:chr12:45535139-45534955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 75

               
               
               Conread position:360-527
               
               
               Cow position:chr12:32808625-32808456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:362-551
               
               
               Cow position:chr12:583522-583320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):83, 191

               
               
               Conread position:364-462
               
               
               Cow position:chr12:4014443-4014345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:81
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:365-537
               
               
               Cow position:chr12:43619271-43619453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 144

               
               
               Conread position:366-536
               
               
               Cow position:chr12:4008095-4007912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:366-546
               
               
               Cow position:chr12:14396793-14396612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 135

               
               
               Conread position:367-552
               
               
               Cow position:chr12:8710978-8711168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:368-462
               
               
               Cow position:chr12:4104811-4104905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:79
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:368-550
               
               
               Cow position:chr12:17254135-17254326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:369-460
               
               
               Cow position:chr12:18796201-18796110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:369-527
               
               
               Cow position:chr12:40309315-40309472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:371-550
               
               
               Cow position:chr12:41684504-41684683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 159

               
               
               Conread position:372-548
               
               
               Cow position:chr12:20654480-20654298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 48

               
               
               Conread position:372-549
               
               
               Cow position:chr12:18978686-18978865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:373-536
               
               
               Cow position:chr12:44822292-44822451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:374-548
               
               
               Cow position:chr12:38032140-38031965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):68, 51

               
               
               Conread position:375-527
               
               
               Cow position:chr12:18532853-18532995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:375-532
               
               
               Cow position:chr12:29762249-29762078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:375-544
               
               
               Cow position:chr12:46106791-46106968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:375-550
               
               
               Cow position:chr12:37702979-37702799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:376-541
               
               
               Cow position:chr12:1952800-1952633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):68, 157

               
               
               Conread position:376-551
               
               
               Cow position:chr12:40043013-40043192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 53

               
               
               Conread position:380-524
               
               
               Cow position:chr12:26317637-26317777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 59

               
               
               Conread position:381-549
               
               
               Cow position:chr12:2835410-2835586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:382-524
               
               
               Cow position:chr12:47086099-47085959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):55, 47

               
               
               Conread position:382-527
               
               
               Cow position:chr12:20637528-20637378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:382-527
               
               
               Cow position:chr12:43869191-43869058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:386-525
               
               
               Cow position:chr12:40435031-40434885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:387-547
               
               
               Cow position:chr12:44892220-44892388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:388-527
               
               
               Cow position:chr12:24533802-24533654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:393-524
               
               
               Cow position:chr12:15151850-15151719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 108

               
               
               Conread position:393-532
               
               
               Cow position:chr12:38165522-38165376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:399-509
               
               
               Cow position:chr12:17622394-17622284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:403-532
               
               
               Cow position:chr12:3579513-3579650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:403-532
               
               
               Cow position:chr12:22260876-22260741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:411-547
               
               
               Cow position:chr12:44211189-44211332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:415-547
               
               
               Cow position:chr12:3775513-3775645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):51, 30

               
               
               Conread position:440-542
               
               
               Cow position:chr12:11090517-11090619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.