• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-rfbs3918b_e17.5
        

               
Conread position:
               
3-264
               

               
Cow position:
               
chr13:39948105-39948363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 55
               

               
Conread position:
               
12-496
               

               
Cow position:
               
chr13:20666082-20666567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 95
               

               
Conread position:
               
13-456
               

               
Cow position:
               
chr13:42229624-42229178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 55
               

               
Conread position:
               
14-535
               

               
Cow position:
               
chr13:1170772-1170237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 142
               

               
Conread position:
               
21-527
               

               
Cow position:
               
chr13:18167022-18166520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
22-217
               

               
Cow position:
               
chr13:20781026-20781225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
23-455
               

               
Cow position:
               
chr13:6086607-6087026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
25-229
               

               
Cow position:
               
chr13:13988390-13988178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
25-233
               

               
Cow position:
               
chr13:17982081-17981882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
25-527
               

               
Cow position:
               
chr13:34728539-34729053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
25-545
               

               
Cow position:
               
chr13:15288632-15289149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
25-549
               

               
Cow position:
               
chr13:40722420-40722919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 19
               

               
Conread position:
               
26-527
               

               
Cow position:
               
chr13:22115987-22115463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
32-343
               

               
Cow position:
               
chr13:24060064-24060358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 72
               

               
Conread position:
               
32-515
               

               
Cow position:
               
chr13:37521448-37521949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
32-544
               

               
Cow position:
               
chr13:17021436-17021955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
33-551
               

               
Cow position:
               
chr13:6079134-6079641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 130
               

               
Conread position:
               
34-225
               

               
Cow position:
               
chr13:8899846-8899650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
34-532
               

               
Cow position:
               
chr13:34263097-34263591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 30
               

               
Conread position:
               
35-456
               

               
Cow position:
               
chr13:45726162-45725751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
36-219
               

               
Cow position:
               
chr13:17910124-17910316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
36-373
               

               
Cow position:
               
chr13:1780113-1779777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
36-462
               

               
Cow position:
               
chr13:23166817-23167244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
36-527
               

               
Cow position:
               
chr13:26261515-26262004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 29
               

               
Conread position:
               
37-234
               

               
Cow position:
               
chr13:29122559-29122752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
38-535
               

               
Cow position:
               
chr13:46525164-46525648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
42-397
               

               
Cow position:
               
chr13:39293885-39294245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 245
               

               
Conread position:
               
42-433
               

               
Cow position:
               
chr13:45604144-45604527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 24
               

               
Conread position:
               
42-548
               

               
Cow position:
               
chr13:6189355-6189834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 122
               

               
Conread position:
               
43-161
               

               
Cow position:
               
chr13:28570112-28569988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
43-210
               

               
Cow position:
               
chr13:16952949-16952785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
35, 131
               

               
Conread position:
               
43-217
               

               
Cow position:
               
chr13:25641837-25642012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr13:14815929-14815750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr13:31511796-31511973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
43-224
               

               
Cow position:
               
chr13:15957080-15956896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
43-225
               

               
Cow position:
               
chr13:15460520-15460708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
43-225
               

               
Cow position:
               
chr13:18963264-18963080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
43-228
               

               
Cow position:
               
chr13:51856362-51856548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
35, 77
               

               
Conread position:
               
43-229
               

               
Cow position:
               
chr13:26983892-26983708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
43-264
               

               
Cow position:
               
chr13:43119583-43119362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
175, 39
               

               
Conread position:
               
43-264
               

               
Cow position:
               
chr13:52097898-52097676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 120
               

               
Conread position:
               
43-265
               

               
Cow position:
               
chr13:1767044-1766823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
43-350
               

               
Cow position:
               
chr13:47313178-47312888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
186, 39
               

               
Conread position:
               
43-369
               

               
Cow position:
               
chr13:19178548-19178224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
174, 23
               

               
Conread position:
               
43-411
               

               
Cow position:
               
chr13:8202610-8202956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
43-412
               

               
Cow position:
               
chr13:3015895-3016264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
175, 141
               

               
Conread position:
               
43-412
               

               
Cow position:
               
chr13:54080529-54080905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
43-453
               

               
Cow position:
               
chr13:20649708-20650114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
43-455
               

               
Cow position:
               
chr13:11820852-11820463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 41
               

               
Conread position:
               
43-525
               

               
Cow position:
               
chr13:60967039-60966569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 121
               

               
Conread position:
               
43-526
               

               
Cow position:
               
chr13:47007464-47007924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
43-527
               

               
Cow position:
               
chr13:34281955-34281469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 239
               

               
Conread position:
               
43-549
               

               
Cow position:
               
chr13:58525187-58524709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
179, 34
               

               
Conread position:
               
43-551
               

               
Cow position:
               
chr13:34871895-34872409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
36, 228
               

               
Conread position:
               
44-179
               

               
Cow position:
               
chr13:25332545-25332683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
44-211
               

               
Cow position:
               
chr13:21670634-21670469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
44-256
               

               
Cow position:
               
chr13:36948896-36949112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
44-260
               

               
Cow position:
               
chr13:21524699-21524487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
44-264
               

               
Cow position:
               
chr13:57323721-57323508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
181, 33
               

               
Conread position:
               
44-265
               

               
Cow position:
               
chr13:5498088-5497864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
44-265
               

               
Cow position:
               
chr13:6606745-6606970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
7, 121
               

               
Conread position:
               
44-265
               

               
Cow position:
               
chr13:24931104-24930877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
44-266
               

               
Cow position:
               
chr13:1568572-1568346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 215
               

               
Conread position:
               
44-266
               

               
Cow position:
               
chr13:8473249-8473022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
44-266
               

               
Cow position:
               
chr13:8782824-8783051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
44-269
               

               
Cow position:
               
chr13:3144619-3144389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
44-269
               

               
Cow position:
               
chr13:57786449-57786679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
44-347
               

               
Cow position:
               
chr13:10859692-10859981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
44-367
               

               
Cow position:
               
chr13:19229475-19229148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 235
               

               
Conread position:
               
44-397
               

               
Cow position:
               
chr13:54975531-54975885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 239
               

               
Conread position:
               
44-402
               

               
Cow position:
               
chr13:670956-671317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 230
               

               
Conread position:
               
44-413
               

               
Cow position:
               
chr13:34941383-34941742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
44-452
               

               
Cow position:
               
chr13:12408010-12408418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
44-453
               

               
Cow position:
               
chr13:48037891-48037491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 21
               

               
Conread position:
               
44-454
               

               
Cow position:
               
chr13:46311760-46312145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
44-527
               

               
Cow position:
               
chr13:16247926-16247432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
44-552
               

               
Cow position:
               
chr13:33875936-33875435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 129
               

               
Conread position:
               
45-156
               

               
Cow position:
               
chr13:28653104-28652992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
45-174
               

               
Cow position:
               
chr13:9900577-9900444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
45-216
               

               
Cow position:
               
chr13:18475435-18475605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr13:15591860-15592031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
45-229
               

               
Cow position:
               
chr13:1638607-1638787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
45-264
               

               
Cow position:
               
chr13:37947742-37947949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
173, 37
               

               
Conread position:
               
45-269
               

               
Cow position:
               
chr13:27475441-27475212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
33, 87
               

               
Conread position:
               
45-329
               

               
Cow position:
               
chr13:15172136-15172422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
45-342
               

               
Cow position:
               
chr13:37980378-37980666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
253, 37
               

               
Conread position:
               
45-345
               

               
Cow position:
               
chr13:37945947-37946230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
177, 37
               

               
Conread position:
               
45-358
               

               
Cow position:
               
chr13:13762409-13762723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
33, 231
               

               
Conread position:
               
45-369
               

               
Cow position:
               
chr13:20683219-20682901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 102
               

               
Conread position:
               
45-407
               

               
Cow position:
               
chr13:27314407-27314049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
45-425
               

               
Cow position:
               
chr13:36352696-36353061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
11, 61
               

               
Conread position:
               
45-437
               

               
Cow position:
               
chr13:17622557-17622173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 104
               

               
Conread position:
               
45-453
               

               
Cow position:
               
chr13:16015088-16014679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
22, 133
               

               
Conread position:
               
45-453
               

               
Cow position:
               
chr13:60974348-60973948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
45-456
               

               
Cow position:
               
chr13:8609278-8609682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
45-456
               

               
Cow position:
               
chr13:9142555-9142146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
45-456
               

               
Cow position:
               
chr13:17800345-17799940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
45-522
               

               
Cow position:
               
chr13:971625-972104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
45-524
               

               
Cow position:
               
chr13:35525941-35526403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
45-543
               

               
Cow position:
               
chr13:18989978-18989495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 113
               

               
Conread position:
               
45-550
               

               
Cow position:
               
chr13:45353315-45352795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
45-552
               

               
Cow position:
               
chr13:15162396-15162870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
46-316
               

               
Cow position:
               
chr13:5175841-5175566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
46-405
               

               
Cow position:
               
chr13:53536035-53536392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
46-412
               

               
Cow position:
               
chr13:18244127-18243771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
46-455
               

               
Cow position:
               
chr13:20683850-20684265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
46-462
               

               
Cow position:
               
chr13:9265546-9265967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 227
               

               
Conread position:
               
46-524
               

               
Cow position:
               
chr13:19393556-19393087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 10
               

               
Conread position:
               
46-527
               

               
Cow position:
               
chr13:20820572-20821049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 19
               

               
Conread position:
               
46-543
               

               
Cow position:
               
chr13:57003012-57002497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 147
               

               
Conread position:
               
46-552
               

               
Cow position:
               
chr13:10924637-10925162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
47-528
               

               
Cow position:
               
chr13:15446317-15445836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 100
               

               
Conread position:
               
48-193
               

               
Cow position:
               
chr13:21126807-21126947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
48-264
               

               
Cow position:
               
chr13:23199478-23199257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
31, 100
               

               
Conread position:
               
48-359
               

               
Cow position:
               
chr13:16833820-16834113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
48-461
               

               
Cow position:
               
chr13:38277867-38278287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 125
               

               
Conread position:
               
48-532
               

               
Cow position:
               
chr13:4553069-4552609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
48-537
               

               
Cow position:
               
chr13:21107400-21106922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
49-157
               

               
Cow position:
               
chr13:34190944-34191054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-171
               

               
Cow position:
               
chr13:3143507-3143386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
49-171
               

               
Cow position:
               
chr13:5910447-5910570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-171
               

               
Cow position:
               
chr13:12480528-12480653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-177
               

               
Cow position:
               
chr13:51901881-51901751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-182
               

               
Cow position:
               
chr13:24729217-24729083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
49-182
               

               
Cow position:
               
chr13:62151834-62151969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-187
               

               
Cow position:
               
chr13:548787-548652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
49-187
               

               
Cow position:
               
chr13:27241191-27241052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
49-193
               

               
Cow position:
               
chr13:21135463-21135603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
49-194
               

               
Cow position:
               
chr13:47599637-47599490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
49-197
               

               
Cow position:
               
chr13:61253430-61253283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
49-206
               

               
Cow position:
               
chr13:1000821-1000666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
49-212
               

               
Cow position:
               
chr13:22570806-22570641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
49-216
               

               
Cow position:
               
chr13:3970361-3970530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-217
               

               
Cow position:
               
chr13:2955572-2955742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-217
               

               
Cow position:
               
chr13:3356541-3356711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-217
               

               
Cow position:
               
chr13:22076345-22076185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
49-217
               

               
Cow position:
               
chr13:51483933-51484103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-218
               

               
Cow position:
               
chr13:48378303-48378475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-219
               

               
Cow position:
               
chr13:6664406-6664234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-219
               

               
Cow position:
               
chr13:19396621-19396450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 130
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:609573-609746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:995800-995973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:1346443-1346269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:3319931-3320110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:7366176-7366348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 134
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:9119843-9120012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:9302106-9302278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:12244747-12244916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:13344223-13344056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:15281010-15281183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:15580121-15579947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:16808304-16808477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:18534165-18534337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:19639158-19639331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:23460368-23460538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:25453439-25453266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:28413566-28413396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:29819969-29820143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:30307136-30307306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:30468396-30468224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:32793618-32793447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:33162940-33163113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:35533093-35532930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:35853083-35853253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:42690285-42690118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
139, 11
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:42839270-42839439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 131
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:43151376-43151203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:47073871-47074044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:51332124-51331955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 142
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:52077556-52077735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:55371892-55372065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr13:60447824-60447998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-223
               

               
Cow position:
               
chr13:8265743-8265566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-223
               

               
Cow position:
               
chr13:18197242-18197069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 147
               

               
Conread position:
               
49-225
               

               
Cow position:
               
chr13:19119267-19119093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
49-225
               

               
Cow position:
               
chr13:20537852-20537682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
49-230
               

               
Cow position:
               
chr13:6650992-6651171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
49-234
               

               
Cow position:
               
chr13:10755183-10755001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
49-234
               

               
Cow position:
               
chr13:11570956-11570768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
49-234
               

               
Cow position:
               
chr13:43384367-43384552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
49-236
               

               
Cow position:
               
chr13:265414-265225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
29, 178
               

               
Conread position:
               
49-238
               

               
Cow position:
               
chr13:11794978-11794783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
49-239
               

               
Cow position:
               
chr13:62018821-62019014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 129
               

               
Conread position:
               
49-242
               

               
Cow position:
               
chr13:32151835-32151645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
49-242
               

               
Cow position:
               
chr13:36264233-36264041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
49-251
               

               
Cow position:
               
chr13:32826138-32826349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-253
               

               
Cow position:
               
chr13:43911392-43911601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
49-254
               

               
Cow position:
               
chr13:62480266-62480484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 146
               

               
Conread position:
               
49-256
               

               
Cow position:
               
chr13:21231234-21231444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-256
               

               
Cow position:
               
chr13:25882957-25883162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr13:3480016-3479796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr13:14927506-14927289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr13:16270204-16269977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr13:18329403-18329180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr13:25248875-25249103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr13:27018883-27018666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr13:40657526-40657743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr13:52178367-52178160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 145
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr13:60690450-60690673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:6945642-6945420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:8635849-8635626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:10658563-10658342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 128
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:20834588-20834804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:21402526-21402743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 196
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:24285822-24285611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
169, 29
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:24539761-24539544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
169, 16
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:45496994-45497206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:48627011-48626809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:55843753-55843532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr13:61170455-61170668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 23
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:560666-560444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:711500-711272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:14215273-14215055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:18121152-18120930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:30794089-30793868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
30, 7
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:31990602-31990824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:33522239-33522017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:36673390-36673612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:37516865-37517085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:37698314-37698092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:43106794-43106572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:45355543-45355330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 55
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr13:52010317-52010528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr13:681778-682003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr13:3994273-3994498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr13:5028830-5029055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr13:8301277-8301502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr13:20327396-20327620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
29, 130
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr13:21008944-21008714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr13:36701568-36701793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr13:37122657-37122880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 214
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr13:43628854-43629079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr13:60436614-60436837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
49-299
               

               
Cow position:
               
chr13:41360020-41359767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
49-323
               

               
Cow position:
               
chr13:7403127-7403407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 267
               

               
Conread position:
               
49-334
               

               
Cow position:
               
chr13:7257670-7257383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
29, 144
               

               
Conread position:
               
49-342
               

               
Cow position:
               
chr13:562868-563164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
42, 251
               

               
Conread position:
               
49-349
               

               
Cow position:
               
chr13:1636270-1635977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
49-350
               

               
Cow position:
               
chr13:5091392-5091698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 288
               

               
Conread position:
               
49-350
               

               
Cow position:
               
chr13:13266070-13265777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr13:4665777-4666080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr13:11486758-11487061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr13:13776683-13776986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr13:16922599-16922902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-355
               

               
Cow position:
               
chr13:34052333-34052623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr13:1341088-1341398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr13:11267083-11267393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 253
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr13:18215698-18215407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 115
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr13:34932613-34932922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 218
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr13:36537693-36538003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr13:39203034-39203344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr13:42249807-42250117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr13:44190039-44190349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr13:52276145-52276455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr13:7415769-7416079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr13:12682274-12682584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr13:47215984-47216295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr13:60377139-60377450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 207
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr13:3693048-3693364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr13:18268223-18268539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr13:26161211-26161527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr13:45934346-45934662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr13:49446478-49446794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 237
               

               
Conread position:
               
49-366
               

               
Cow position:
               
chr13:1011601-1011287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 216
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr13:5119123-5119442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 227
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr13:6870021-6870339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 130
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr13:34212467-34212786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr13:38089784-38090101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-376
               

               
Cow position:
               
chr13:20440332-20440636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
49-391
               

               
Cow position:
               
chr13:42277312-42277657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 208
               

               
Conread position:
               
49-397
               

               
Cow position:
               
chr13:49977392-49977742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
29, 228
               

               
Conread position:
               
49-397
               

               
Cow position:
               
chr13:52433362-52433707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 152
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr13:4736164-4736512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 232
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr13:37320649-37320999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr13:13306375-13306015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 246
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr13:17568417-17568770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr13:30504725-30504370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 44
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr13:31808781-31808440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr13:36396899-36397258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 256
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr13:55338462-55338816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-404
               

               
Cow position:
               
chr13:6835540-6835878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
49-409
               

               
Cow position:
               
chr13:19138706-19138352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-410
               

               
Cow position:
               
chr13:58043897-58043539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr13:41918897-41919246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr13:61047475-61047124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
49-412
               

               
Cow position:
               
chr13:17613615-17613249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
49-419
               

               
Cow position:
               
chr13:40652202-40651836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
49-423
               

               
Cow position:
               
chr13:3716255-3715881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 224
               

               
Conread position:
               
49-423
               

               
Cow position:
               
chr13:25531521-25531892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
49-434
               

               
Cow position:
               
chr13:51484483-51484868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
49-437
               

               
Cow position:
               
chr13:6153510-6153900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 136
               

               
Conread position:
               
49-440
               

               
Cow position:
               
chr13:11834214-11834598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
49-446
               

               
Cow position:
               
chr13:7663160-7663546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
49-449
               

               
Cow position:
               
chr13:31814136-31813747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 118
               

               
Conread position:
               
49-449
               

               
Cow position:
               
chr13:47756643-47756236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 242
               

               
Conread position:
               
49-449
               

               
Cow position:
               
chr13:50690123-50690525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 220
               

               
Conread position:
               
49-451
               

               
Cow position:
               
chr13:21176053-21176449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 64
               

               
Conread position:
               
49-454
               

               
Cow position:
               
chr13:12546638-12547041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
49-455
               

               
Cow position:
               
chr13:60429810-60430213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
49-456
               

               
Cow position:
               
chr13:13766035-13765655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
49-457
               

               
Cow position:
               
chr13:36771153-36771556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 115
               

               
Conread position:
               
49-461
               

               
Cow position:
               
chr13:20605850-20606257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
49-462
               

               
Cow position:
               
chr13:1042687-1043103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 240
               

               
Conread position:
               
49-462
               

               
Cow position:
               
chr13:37484001-37484420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 231
               

               
Conread position:
               
49-462
               

               
Cow position:
               
chr13:38562213-38561802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
49-462
               

               
Cow position:
               
chr13:40943512-40943100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
49-462
               

               
Cow position:
               
chr13:51821619-51822015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 128
               

               
Conread position:
               
49-463
               

               
Cow position:
               
chr13:18835455-18835060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
49-465
               

               
Cow position:
               
chr13:37382080-37381657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 240
               

               
Conread position:
               
49-467
               

               
Cow position:
               
chr13:20563267-20562849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 129
               

               
Conread position:
               
49-469
               

               
Cow position:
               
chr13:52585754-52586186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 52
               

               
Conread position:
               
49-505
               

               
Cow position:
               
chr13:34035637-34035183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 226
               

               
Conread position:
               
49-511
               

               
Cow position:
               
chr13:52637550-52637101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
49-514
               

               
Cow position:
               
chr13:49805237-49804789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 29
               

               
Conread position:
               
49-517
               

               
Cow position:
               
chr13:15869386-15868907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
49-517
               

               
Cow position:
               
chr13:23269944-23270395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
49-523
               

               
Cow position:
               
chr13:8362477-8362955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 217
               

               
Conread position:
               
49-524
               

               
Cow position:
               
chr13:6974434-6973953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 115
               

               
Conread position:
               
49-524
               

               
Cow position:
               
chr13:12521515-12521970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
49-524
               

               
Cow position:
               
chr13:13321049-13320588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
49-524
               

               
Cow position:
               
chr13:25434860-25435315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 123
               

               
Conread position:
               
49-525
               

               
Cow position:
               
chr13:17855643-17855157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 189
               

               
Conread position:
               
49-525
               

               
Cow position:
               
chr13:27524993-27525469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
49-525
               

               
Cow position:
               
chr13:30651444-30650975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 101
               

               
Conread position:
               
49-525
               

               
Cow position:
               
chr13:33256765-33256287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
49-525
               

               
Cow position:
               
chr13:43138960-43139409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
49-525
               

               
Cow position:
               
chr13:52284178-52283699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 143
               

               
Conread position:
               
49-526
               

               
Cow position:
               
chr13:10988805-10989285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
49-526
               

               
Cow position:
               
chr13:15872718-15872226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 152
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr13:311701-311220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr13:9125942-9125477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 89
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr13:12448719-12449193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr13:12670176-12670664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr13:15958890-15958410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr13:20175008-20174525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr13:20893373-20893856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr13:61976696-61977170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
49-532
               

               
Cow position:
               
chr13:17158595-17159099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 261
               

               
Conread position:
               
49-532
               

               
Cow position:
               
chr13:41807044-41806559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-533
               

               
Cow position:
               
chr13:17820991-17821476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-535
               

               
Cow position:
               
chr13:661366-661840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
49-535
               

               
Cow position:
               
chr13:25695499-25695987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 126
               

               
Conread position:
               
49-539
               

               
Cow position:
               
chr13:51528177-51528662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 138
               

               
Conread position:
               
49-540
               

               
Cow position:
               
chr13:21235420-21235893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 25
               

               
Conread position:
               
49-543
               

               
Cow position:
               
chr13:13089292-13088806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
49-545
               

               
Cow position:
               
chr13:32717602-32718076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
30, 128
               

               
Conread position:
               
49-546
               

               
Cow position:
               
chr13:8824535-8824051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 136
               

               
Conread position:
               
49-546
               

               
Cow position:
               
chr13:12574903-12574400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
49-547
               

               
Cow position:
               
chr13:6759521-6759997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
49-547
               

               
Cow position:
               
chr13:12875716-12876211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
49-548
               

               
Cow position:
               
chr13:6616479-6616993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 236
               

               
Conread position:
               
49-549
               

               
Cow position:
               
chr13:24754153-24753660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
49-549
               

               
Cow position:
               
chr13:34508145-34507661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
49-550
               

               
Cow position:
               
chr13:1231919-1231406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
49-550
               

               
Cow position:
               
chr13:20879568-20880057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
402, 71
               

               
Conread position:
               
49-550
               

               
Cow position:
               
chr13:34375524-34375025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
49-551
               

               
Cow position:
               
chr13:12045072-12045580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 33
               

               
Conread position:
               
49-551
               

               
Cow position:
               
chr13:12233189-12233675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 123
               

               
Conread position:
               
49-551
               

               
Cow position:
               
chr13:38283715-38284207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 144
               

               
Conread position:
               
49-551
               

               
Cow position:
               
chr13:42860304-42860805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr13:152211-151729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 40
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr13:2884319-2883822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
173, 11
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr13:21708450-21707969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
29, 141
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr13:26098411-26097949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr13:30798991-30798475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 108
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr13:32017254-32017751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr13:32283396-32282889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 101
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr13:38329902-38329380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 239
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr13:51940998-51940512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr13:56686700-56686206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 116
               

               
Conread position:
               
50-172
               

               
Cow position:
               
chr13:48629258-48629134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
50-195
               

               
Cow position:
               
chr13:33975944-33975804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
50-208
               

               
Cow position:
               
chr13:2475894-2476053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 129
               

               
Conread position:
               
50-208
               

               
Cow position:
               
chr13:46996791-46996632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
50-220
               

               
Cow position:
               
chr13:1590430-1590260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
50-220
               

               
Cow position:
               
chr13:28140272-28140443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
50-229
               

               
Cow position:
               
chr13:24373673-24373488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
50-230
               

               
Cow position:
               
chr13:46329196-46329377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
28, 116
               

               
Conread position:
               
50-266
               

               
Cow position:
               
chr13:27027507-27027723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
165, 22
               

               
Conread position:
               
50-268
               

               
Cow position:
               
chr13:22276901-22277122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
50-347
               

               
Cow position:
               
chr13:34333684-34333967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
50-357
               

               
Cow position:
               
chr13:5752155-5752464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
28, 124
               

               
Conread position:
               
50-481
               

               
Cow position:
               
chr13:32167034-32167467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
50-515
               

               
Cow position:
               
chr13:57493916-57494373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
50-516
               

               
Cow position:
               
chr13:23265997-23265548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
28, 136
               

               
Conread position:
               
50-522
               

               
Cow position:
               
chr13:17886765-17886328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
50-525
               

               
Cow position:
               
chr13:42114289-42113805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 123
               

               
Conread position:
               
50-527
               

               
Cow position:
               
chr13:20378073-20378529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 32
               

               
Conread position:
               
50-532
               

               
Cow position:
               
chr13:44278622-44278129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 123
               

               
Conread position:
               
51-217
               

               
Cow position:
               
chr13:14576933-14576773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
51-220
               

               
Cow position:
               
chr13:19218408-19218242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 109
               

               
Conread position:
               
51-250
               

               
Cow position:
               
chr13:49283075-49283276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
51-262
               

               
Cow position:
               
chr13:11290549-11290765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
17, 127
               

               
Conread position:
               
51-264
               

               
Cow position:
               
chr13:42086411-42086195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
51-308
               

               
Cow position:
               
chr13:16128084-16127827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 125
               

               
Conread position:
               
51-354
               

               
Cow position:
               
chr13:3701699-3701406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
51-389
               

               
Cow position:
               
chr13:55295359-55295694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
51-390
               

               
Cow position:
               
chr13:21155224-21155569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 233
               

               
Conread position:
               
51-449
               

               
Cow position:
               
chr13:15167083-15166690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
51-452
               

               
Cow position:
               
chr13:38872707-38873075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
51-457
               

               
Cow position:
               
chr13:43762440-43762033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 130
               

               
Conread position:
               
51-532
               

               
Cow position:
               
chr13:25817780-25817312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
51-533
               

               
Cow position:
               
chr13:4038147-4037702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
51-547
               

               
Cow position:
               
chr13:19023572-19024082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 260
               

               
Conread position:
               
51-552
               

               
Cow position:
               
chr13:14717070-14717561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
27, 64
               

               
Conread position:
               
51-552
               

               
Cow position:
               
chr13:21276122-21275621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 124
               

               
Conread position:
               
52-194
               

               
Cow position:
               
chr13:54286505-54286638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
52-535
               

               
Cow position:
               
chr13:15041206-15041695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 121
               

               
Conread position:
               
52-549
               

               
Cow position:
               
chr13:54702456-54701947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
53-220
               

               
Cow position:
               
chr13:15920739-15920570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
53-224
               

               
Cow position:
               
chr13:6552740-6552565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
53-348
               

               
Cow position:
               
chr13:20863756-20864043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 54
               

               
Conread position:
               
53-402
               

               
Cow position:
               
chr13:46324523-46324870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
16, 110
               

               
Conread position:
               
53-405
               

               
Cow position:
               
chr13:26382966-26383319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 193
               

               
Conread position:
               
53-409
               

               
Cow position:
               
chr13:44626645-44626280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
25, 226
               

               
Conread position:
               
53-449
               

               
Cow position:
               
chr13:37981490-37981872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
53-451
               

               
Cow position:
               
chr13:39952149-39952544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 52
               

               
Conread position:
               
53-473
               

               
Cow position:
               
chr13:28683623-28683210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 50
               

               
Conread position:
               
53-517
               

               
Cow position:
               
chr13:1155443-1155907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 120
               

               
Conread position:
               
53-524
               

               
Cow position:
               
chr13:4208552-4209014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
53-524
               

               
Cow position:
               
chr13:20270953-20271440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 49
               

               
Conread position:
               
53-524
               

               
Cow position:
               
chr13:44202254-44201800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 133
               

               
Conread position:
               
53-527
               

               
Cow position:
               
chr13:47502456-47502903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
25, 122
               

               
Conread position:
               
53-532
               

               
Cow position:
               
chr13:41154789-41155272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
176, 17
               

               
Conread position:
               
53-540
               

               
Cow position:
               
chr13:25537906-25537410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
53-550
               

               
Cow position:
               
chr13:12990110-12989627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
54-161
               

               
Cow position:
               
chr13:1570730-1570623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
55-231
               

               
Cow position:
               
chr13:25656322-25656501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
55-434
               

               
Cow position:
               
chr13:34113265-34113644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 147
               

               
Conread position:
               
55-456
               

               
Cow position:
               
chr13:56154898-56155286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
55-536
               

               
Cow position:
               
chr13:7010732-7010272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 169
               

               
Conread position:
               
56-160
               

               
Cow position:
               
chr13:42085072-42084966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
56-188
               

               
Cow position:
               
chr13:26073194-26073063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
56-220
               

               
Cow position:
               
chr13:20527257-20527091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 86
               

               
Conread position:
               
56-220
               

               
Cow position:
               
chr13:24695629-24695463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
56-220
               

               
Cow position:
               
chr13:35761302-35761468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
56-227
               

               
Cow position:
               
chr13:8779658-8779487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
56-227
               

               
Cow position:
               
chr13:21988840-21989012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
56-234
               

               
Cow position:
               
chr13:39487082-39487258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 48
               

               
Conread position:
               
56-264
               

               
Cow position:
               
chr13:3003709-3003495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
56-264
               

               
Cow position:
               
chr13:15740328-15740117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
56-264
               

               
Cow position:
               
chr13:38485092-38484885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
56-265
               

               
Cow position:
               
chr13:24690207-24689998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
5, 172
               

               
Conread position:
               
56-265
               

               
Cow position:
               
chr13:37497496-37497696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
56-312
               

               
Cow position:
               
chr13:1839642-1839390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
56-326
               

               
Cow position:
               
chr13:19426436-19426703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
56-412
               

               
Cow position:
               
chr13:38897991-38898333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 111
               

               
Conread position:
               
56-423
               

               
Cow position:
               
chr13:8838732-8839093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
23, 117
               

               
Conread position:
               
56-426
               

               
Cow position:
               
chr13:20814018-20814374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 188
               

               
Conread position:
               
56-426
               

               
Cow position:
               
chr13:20816575-20816219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 188
               

               
Conread position:
               
56-454
               

               
Cow position:
               
chr13:32949741-32950125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
22, 205
               

               
Conread position:
               
56-464
               

               
Cow position:
               
chr13:10928728-10929131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 148
               

               
Conread position:
               
56-514
               

               
Cow position:
               
chr13:20570988-20570529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
56-514
               

               
Cow position:
               
chr13:24155804-24155311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
56-515
               

               
Cow position:
               
chr13:33352108-33352565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
170, 9
               

               
Conread position:
               
56-527
               

               
Cow position:
               
chr13:9907001-9906516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 26
               

               
Conread position:
               
56-527
               

               
Cow position:
               
chr13:14544384-14543923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 235
               

               
Conread position:
               
56-527
               

               
Cow position:
               
chr13:15234172-15233734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 48
               

               
Conread position:
               
56-527
               

               
Cow position:
               
chr13:19882774-19883246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
56-527
               

               
Cow position:
               
chr13:22085495-22085944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
56-527
               

               
Cow position:
               
chr13:46516327-46515847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
56-530
               

               
Cow position:
               
chr13:16292808-16292322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
21, 124
               

               
Conread position:
               
56-533
               

               
Cow position:
               
chr13:17291869-17292346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
56-546
               

               
Cow position:
               
chr13:26479952-26480432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
56-549
               

               
Cow position:
               
chr13:11260515-11260044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
56-551
               

               
Cow position:
               
chr13:60508854-60509360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 123
               

               
Conread position:
               
56-552
               

               
Cow position:
               
chr13:2774383-2773894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
56-552
               

               
Cow position:
               
chr13:12977824-12977339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
56-552
               

               
Cow position:
               
chr13:52057803-52057323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 107
               

               
Conread position:
               
57-264
               

               
Cow position:
               
chr13:54381674-54381883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
57-265
               

               
Cow position:
               
chr13:41608111-41608315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
57-441
               

               
Cow position:
               
chr13:889920-890293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 100
               

               
Conread position:
               
57-532
               

               
Cow position:
               
chr13:18852334-18851871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 33
               

               
Conread position:
               
57-552
               

               
Cow position:
               
chr13:21287829-21288322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 119
               

               
Conread position:
               
58-188
               

               
Cow position:
               
chr13:6969300-6969432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
58-211
               

               
Cow position:
               
chr13:22732119-22732269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
20, 8
               

               
Conread position:
               
58-361
               

               
Cow position:
               
chr13:4866720-4867007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
58-367
               

               
Cow position:
               
chr13:2560261-2559952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 217
               

               
Conread position:
               
58-375
               

               
Cow position:
               
chr13:54418490-54418162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
163, 98
               

               
Conread position:
               
58-532
               

               
Cow position:
               
chr13:24715493-24715032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
58-532
               

               
Cow position:
               
chr13:37617583-37617095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 212
               

               
Conread position:
               
59-258
               

               
Cow position:
               
chr13:27017131-27017323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
59-264
               

               
Cow position:
               
chr13:17994185-17993983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 116
               

               
Conread position:
               
60-459
               

               
Cow position:
               
chr13:12202618-12202220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
62-339
               

               
Cow position:
               
chr13:16155464-16155730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
161, 39
               

               
Conread position:
               
62-527
               

               
Cow position:
               
chr13:42200872-42200408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 39
               

               
Conread position:
               
62-527
               

               
Cow position:
               
chr13:52894398-52893936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
64-228
               

               
Cow position:
               
chr13:9716008-9716174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
64-251
               

               
Cow position:
               
chr13:19451476-19451659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
64-377
               

               
Cow position:
               
chr13:41253867-41253565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
64-525
               

               
Cow position:
               
chr13:8195335-8194886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 110
               

               
Conread position:
               
64-526
               

               
Cow position:
               
chr13:20784842-20784383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 112
               

               
Conread position:
               
64-527
               

               
Cow position:
               
chr13:35660005-35659542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 120
               

               
Conread position:
               
64-533
               

               
Cow position:
               
chr13:52199339-52198887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 21
               

               
Conread position:
               
64-546
               

               
Cow position:
               
chr13:37069601-37069112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
65-194
               

               
Cow position:
               
chr13:57227959-57227830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
65-219
               

               
Cow position:
               
chr13:52379508-52379660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
65-220
               

               
Cow position:
               
chr13:30673891-30674045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
13, 95
               

               
Conread position:
               
65-229
               

               
Cow position:
               
chr13:19289212-19289048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
65-234
               

               
Cow position:
               
chr13:15747212-15747038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
65-251
               

               
Cow position:
               
chr13:60221183-60221367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
152, 100
               

               
Conread position:
               
65-264
               

               
Cow position:
               
chr13:2113938-2113735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
13, 129
               

               
Conread position:
               
65-264
               

               
Cow position:
               
chr13:46298387-46298593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
37, 0
               
UCSC Genome Browser

               
Conread position:
               
65-281
               

               
Cow position:
               
chr13:52440438-52440222 (view  custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
153, 35
               
UCSC Genome Browser

               
               
               
Conread position:
65-292

               
               
               
Cow position:
chr13:21210115-21209886 (view  custom track)

               
               
               
Alignm length:
232

               
               
               
Alignm identity:
179

               
               
               
Alignm E-value:
1.4013e-45

               
               
               
Alignm gaps (pig, cow):
12, 215
UCSC Genome Browser

               
               
               
Conread position:
65-315

               
               
               
Cow position:
chr13:46458869-46458625 (view  custom track)

               
               
               
Alignm length:
255

               
               
               
Alignm identity:
186

               
               
               
Alignm E-value:
5e-36

               
               
               
Alignm gaps (pig, cow):
153, 19

               
               
               Conread position:65-349
               
               
               Cow position:chr13:25261556-25261840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 130

               
               
               Conread position:65-376
               
               
               Cow position:chr13:33517671-33517978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:65-426
               
               
               Cow position:chr13:5658480-5658832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):159, 36

               
               
               Conread position:65-456
               
               
               Cow position:chr13:23856466-23856076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 67

               
               
               Conread position:65-460
               
               
               Cow position:chr13:11460874-11460491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):377, 35

               
               
               Conread position:65-461
               
               
               Cow position:chr13:43184620-43185020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 102

               
               
               Conread position:65-461
               
               
               Cow position:chr13:56148790-56148381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 36

               
               
               Conread position:65-461
               
               
               Cow position:chr13:56160177-56160586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 36

               
               
               Conread position:65-462
               
               
               Cow position:chr13:45022957-45023346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:65-512
               
               
               Cow position:chr13:60650669-60651086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:65-523
               
               
               Cow position:chr13:6621347-6621781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:309
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):153, 95

               
               
               Conread position:65-532
               
               
               Cow position:chr13:13261261-13260774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 217

               
               
               Conread position:65-533
               
               
               Cow position:chr13:54095057-54094608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:65-537
               
               
               Cow position:chr13:13501371-13501833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 48

               
               
               Conread position:66-220
               
               
               Cow position:chr13:21694309-21694457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:66-220
               
               
               Cow position:chr13:33168528-33168673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:66-235
               
               
               Cow position:chr13:29671191-29671354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:66-265
               
               
               Cow position:chr13:7262643-7262445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):152, 135

               
               
               Conread position:66-265
               
               
               Cow position:chr13:46501554-46501354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):130, 105

               
               
               Conread position:66-352
               
               
               Cow position:chr13:22775062-22775329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):200, 35

               
               
               Conread position:66-352
               
               
               Cow position:chr13:22780195-22779930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:66-380
               
               
               Cow position:chr13:30693951-30693655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 106

               
               
               Conread position:66-388
               
               
               Cow position:chr13:52922338-52922031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):155, 78

               
               
               Conread position:66-405
               
               
               Cow position:chr13:33631370-33631045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):246, 95

               
               
               Conread position:66-410
               
               
               Cow position:chr13:24280498-24280168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):37, 173

               
               
               Conread position:66-412
               
               
               Cow position:chr13:49848167-49847832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):156, 35

               
               
               Conread position:66-413
               
               
               Cow position:chr13:57745850-57746196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):149, 35

               
               
               Conread position:66-454
               
               
               Cow position:chr13:5713546-5713182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:66-455
               
               
               Cow position:chr13:52285065-52284683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:66-462
               
               
               Cow position:chr13:17977578-17977213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:66-496
               
               
               Cow position:chr13:23479281-23478847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:66-509
               
               
               Cow position:chr13:9246964-9246538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):188, 108

               
               
               Conread position:66-522
               
               
               Cow position:chr13:16343936-16343503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):152, 61

               
               
               Conread position:66-523
               
               
               Cow position:chr13:1959259-1958817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):152, 99

               
               
               Conread position:66-524
               
               
               Cow position:chr13:4664611-4665059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:66-524
               
               
               Cow position:chr13:9665325-9664873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):87, 272

               
               
               Conread position:66-524
               
               
               Cow position:chr13:34995076-34995521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 127

               
               
               Conread position:66-527
               
               
               Cow position:chr13:15945750-15945281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:320
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):103, 184

               
               
               Conread position:66-535
               
               
               Cow position:chr13:29631102-29630652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:311
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):216, 44

               
               
               Conread position:66-537
               
               
               Cow position:chr13:43594866-43595327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 36

               
               
               Conread position:66-545
               
               
               Cow position:chr13:48251742-48252197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:328
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):160, 108

               
               
               Conread position:66-547
               
               
               Cow position:chr13:14063278-14063754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 37

               
               
               Conread position:66-550
               
               
               Cow position:chr13:3315423-3315906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 142

               
               
               Conread position:67-228
               
               
               Cow position:chr13:47852281-47852120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 156

               
               
               Conread position:67-388
               
               
               Cow position:chr13:29814791-29814472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):17, 75

               
               
               Conread position:67-429
               
               
               Cow position:chr13:8201236-8201591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:67-455
               
               
               Cow position:chr13:17970786-17971163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 34

               
               
               Conread position:67-474
               
               
               Cow position:chr13:15884765-15885173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 34

               
               
               Conread position:67-519
               
               
               Cow position:chr13:15974859-15974414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 96

               
               
               Conread position:67-535
               
               
               Cow position:chr13:53574206-53573760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 63

               
               
               Conread position:67-552
               
               
               Cow position:chr13:57475169-57475656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:68-195
               
               
               Cow position:chr13:1846133-1846009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:68-216
               
               
               Cow position:chr13:24238223-24238366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 49

               
               
               Conread position:68-263
               
               
               Cow position:chr13:54237592-54237409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:68-264
               
               
               Cow position:chr13:38012609-38012409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:68-264
               
               
               Cow position:chr13:58719273-58719465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 106

               
               
               Conread position:68-423
               
               
               Cow position:chr13:52879660-52879300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:68-449
               
               
               Cow position:chr13:12614508-12614125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 93

               
               
               Conread position:68-451
               
               
               Cow position:chr13:11061232-11060857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:68-527
               
               
               Cow position:chr13:23960556-23961019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 237

               
               
               Conread position:68-527
               
               
               Cow position:chr13:37985501-37985960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:68-532
               
               
               Cow position:chr13:25927042-25926570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 105

               
               
               Conread position:69-231
               
               
               Cow position:chr13:45000857-45000698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 72

               
               
               Conread position:69-246
               
               
               Cow position:chr13:34299397-34299566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):153, 33

               
               
               Conread position:69-314
               
               
               Cow position:chr13:8607273-8607514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:69-377
               
               
               Cow position:chr13:37521133-37521432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 100

               
               
               Conread position:69-407
               
               
               Cow position:chr13:61166208-61166536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:69-411
               
               
               Cow position:chr13:60599695-60600021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):150, 104

               
               
               Conread position:70-229
               
               
               Cow position:chr13:14220715-14220564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:71-220
               
               
               Cow position:chr13:17612823-17612674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-234
               
               
               Cow position:chr13:47675166-47675322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:71-352
               
               
               Cow position:chr13:32316915-32316640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):195, 90

               
               
               Conread position:71-423
               
               
               Cow position:chr13:8524376-8524720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 89

               
               
               Conread position:71-533
               
               
               Cow position:chr13:15622052-15621591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):155, 60

               
               
               Conread position:72-532
               
               
               Cow position:chr13:11767796-11768244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 103

               
               
               Conread position:73-461
               
               
               Cow position:chr13:55315946-55316337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 85

               
               
               Conread position:74-226
               
               
               Cow position:chr13:11316315-11316468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):135, 28

               
               
               Conread position:74-265
               
               
               Cow position:chr13:4604533-4604346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):160, 27

               
               
               Conread position:75-195
               
               
               Cow position:chr13:55947641-55947759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:75-440
               
               
               Cow position:chr13:6060767-6061127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 26

               
               
               Conread position:75-461
               
               
               Cow position:chr13:25547352-25547722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):149, 86

               
               
               Conread position:76-449
               
               
               Cow position:chr13:43194415-43194041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 105

               
               
               Conread position:77-209
               
               
               Cow position:chr13:11202492-11202359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:77-220
               
               
               Cow position:chr13:9107814-9107684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:77-235
               
               
               Cow position:chr13:20792686-20792530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:77-246
               
               
               Cow position:chr13:12926029-12925861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:77-252
               
               
               Cow position:chr13:27985190-27985363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):149, 94

               
               
               Conread position:77-261
               
               
               Cow position:chr13:50681570-50681753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):143, 121

               
               
               Conread position:77-265
               
               
               Cow position:chr13:32773601-32773421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):173, 96

               
               
               Conread position:77-268
               
               
               Cow position:chr13:14227166-14226981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):141, 94

               
               
               Conread position:77-269
               
               
               Cow position:chr13:15624851-15624656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:77-269
               
               
               Cow position:chr13:54331258-54331063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):149, 193

               
               
               Conread position:77-297
               
               
               Cow position:chr13:24776530-24776303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):59, 176

               
               
               Conread position:77-369
               
               
               Cow position:chr13:30510300-30510008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:77-393
               
               
               Cow position:chr13:24376729-24376421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 114

               
               
               Conread position:77-411
               
               
               Cow position:chr13:25062649-25062323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 114

               
               
               Conread position:77-412
               
               
               Cow position:chr13:47863460-47863793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):45, 114

               
               
               Conread position:77-453
               
               
               Cow position:chr13:20705964-20706337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 25

               
               
               Conread position:77-459
               
               
               Cow position:chr13:53566835-53566463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 24

               
               
               Conread position:77-460
               
               
               Cow position:chr13:13176888-13176508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 69

               
               
               Conread position:77-462
               
               
               Cow position:chr13:7076495-7076116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:77-469
               
               
               Cow position:chr13:2414264-2413881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 24

               
               
               Conread position:77-486
               
               
               Cow position:chr13:18351079-18350676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):165, 81

               
               
               Conread position:77-524
               
               
               Cow position:chr13:23586380-23585901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:316
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:77-527
               
               
               Cow position:chr13:52251547-52251994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 201

               
               
               Conread position:77-527
               
               
               Cow position:chr13:55673966-55674422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 204

               
               
               Conread position:77-532
               
               
               Cow position:chr13:19610340-19610783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 26

               
               
               Conread position:77-532
               
               
               Cow position:chr13:22886753-22887189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):144, 89

               
               
               Conread position:77-537
               
               
               Cow position:chr13:44323142-44322669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:77-543
               
               
               Cow position:chr13:19364483-19364018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):142, 112

               
               
               Conread position:77-546
               
               
               Cow position:chr13:20880687-20881154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:77-549
               
               
               Cow position:chr13:9587345-9587814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 24

               
               
               Conread position:77-550
               
               
               Cow position:chr13:17114141-17114616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 55

               
               
               Conread position:78-524
               
               
               Cow position:chr13:10932790-10932364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 190

               
               
               Conread position:78-524
               
               
               Cow position:chr13:24586285-24585839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 165

               
               
               Conread position:78-535
               
               
               Cow position:chr13:17745476-17745038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 13

               
               
               Conread position:79-217
               
               
               Cow position:chr13:26697867-26698004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:79-237
               
               
               Cow position:chr13:19555989-19555835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):139, 91

               
               
               Conread position:79-237
               
               
               Cow position:chr13:57498330-57498490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:79-264
               
               
               Cow position:chr13:2339666-2339488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):172, 22

               
               
               Conread position:79-329
               
               
               Cow position:chr13:60487219-60487474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):139, 239

               
               
               Conread position:79-385
               
               
               Cow position:chr13:16024825-16024525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):117, 23

               
               
               Conread position:79-526
               
               
               Cow position:chr13:5278951-5279420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:79-527
               
               
               Cow position:chr13:21241855-21242288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:79-544
               
               
               Cow position:chr13:12283072-12282609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 23

               
               
               Conread position:80-264
               
               
               Cow position:chr13:17816007-17815822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):143, 104

               
               
               Conread position:80-314
               
               
               Cow position:chr13:34556096-34556333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:80-387
               
               
               Cow position:chr13:2462995-2463301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):139, 22

               
               
               Conread position:80-532
               
               
               Cow position:chr13:23667498-23667040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:80-532
               
               
               Cow position:chr13:33282249-33281808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:81-206
               
               
               Cow position:chr13:19279548-19279425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:81-217
               
               
               Cow position:chr13:9891933-9891799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:81-264
               
               
               Cow position:chr13:18551683-18551498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):137, 97

               
               
               Conread position:81-349
               
               
               Cow position:chr13:46636896-46637153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:82-527
               
               
               Cow position:chr13:9974833-9975280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 207

               
               
               Conread position:84-216
               
               
               Cow position:chr13:48528105-48528236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 41

               
               
               Conread position:84-219
               
               
               Cow position:chr13:19320981-19320852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:84-225
               
               
               Cow position:chr13:15850223-15850082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-350
               
               
               Cow position:chr13:54093972-54093716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):134, 83

               
               
               Conread position:84-363
               
               
               Cow position:chr13:30026345-30026067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):8, 98

               
               
               Conread position:84-515
               
               
               Cow position:chr13:24369817-24369385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 170

               
               
               Conread position:84-552
               
               
               Cow position:chr13:47963969-47964408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 60

               
               
               Conread position:85-336
               
               
               Cow position:chr13:9884999-9884752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):142, 156

               
               
               Conread position:85-433
               
               
               Cow position:chr13:32657575-32657912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):132, 59

               
               
               Conread position:85-535
               
               
               Cow position:chr13:20497883-20497423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 75

               
               
               Conread position:85-540
               
               
               Cow position:chr13:19033778-19033333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:87-265
               
               
               Cow position:chr13:6602982-6603161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:88-228
               
               
               Cow position:chr13:11947500-11947641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:88-229
               
               
               Cow position:chr13:31453822-31453957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:88-232
               
               
               Cow position:chr13:23816523-23816667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):65, 102

               
               
               Conread position:88-233
               
               
               Cow position:chr13:3800139-3800286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:88-265
               
               
               Cow position:chr13:23444582-23444762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:88-265
               
               
               Cow position:chr13:38691311-38691492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:88-265
               
               
               Cow position:chr13:50823328-50823498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:88-420
               
               
               Cow position:chr13:52197868-52197543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 13

               
               
               Conread position:88-461
               
               
               Cow position:chr13:11096400-11096042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 86

               
               
               Conread position:88-517
               
               
               Cow position:chr13:12207271-12206859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 83

               
               
               Conread position:88-552
               
               
               Cow position:chr13:43480289-43479821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 209

               
               
               Conread position:89-220
               
               
               Cow position:chr13:43629549-43629669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:89-264
               
               
               Cow position:chr13:20536727-20536554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):137, 70

               
               
               Conread position:89-433
               
               
               Cow position:chr13:46182014-46181680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:89-458
               
               
               Cow position:chr13:35718907-35719273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):97, 78

               
               
               Conread position:89-462
               
               
               Cow position:chr13:17439539-17439909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 215

               
               
               Conread position:89-527
               
               
               Cow position:chr13:34261459-34261023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 84

               
               
               Conread position:89-546
               
               
               Cow position:chr13:51014954-51015419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:320
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):129, 5

               
               
               Conread position:91-229
               
               
               Cow position:chr13:53308723-53308585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:91-396
               
               
               Cow position:chr13:37795660-37795383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:91-527
               
               
               Cow position:chr13:20839793-20839368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 205

               
               
               Conread position:92-412
               
               
               Cow position:chr13:4464231-4463921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:92-527
               
               
               Cow position:chr13:15192670-15193101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 78

               
               
               Conread position:92-527
               
               
               Cow position:chr13:37818536-37818957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 20

               
               
               Conread position:93-203
               
               
               Cow position:chr13:29907535-29907646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:93-263
               
               
               Cow position:chr13:20597556-20597716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:93-264
               
               
               Cow position:chr13:60393475-60393647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:93-336
               
               
               Cow position:chr13:6975567-6975810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):134, 91

               
               
               Conread position:93-397
               
               
               Cow position:chr13:21039375-21039675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 78

               
               
               Conread position:93-418
               
               
               Cow position:chr13:35653870-35654187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:93-456
               
               
               Cow position:chr13:15281715-15282069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):131, 9

               
               
               Conread position:93-525
               
               
               Cow position:chr13:7059698-7059248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 221

               
               
               Conread position:93-535
               
               
               Cow position:chr13:36877295-36876845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 80

               
               
               Conread position:94-256
               
               
               Cow position:chr13:33054173-33054334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:94-420
               
               
               Cow position:chr13:18170364-18170698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):124, 74

               
               
               Conread position:94-456
               
               
               Cow position:chr13:9593727-9593371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:94-456
               
               
               Cow position:chr13:43868896-43869247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:94-549
               
               
               Cow position:chr13:10845815-10845385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 78

               
               
               Conread position:94-550
               
               
               Cow position:chr13:45073713-45074138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:95-229
               
               
               Cow position:chr13:19263796-19263661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:95-229
               
               
               Cow position:chr13:20530923-20531049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:95-234
               
               
               Cow position:chr13:59962-60096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):63, 77

               
               
               Conread position:95-265
               
               
               Cow position:chr13:6894315-6894146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):125, 76

               
               
               Conread position:95-265
               
               
               Cow position:chr13:22025480-22025656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:95-349
               
               
               Cow position:chr13:20041740-20041998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:95-404
               
               
               Cow position:chr13:60329971-60329676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:95-447
               
               
               Cow position:chr13:13465569-13465892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:95-455
               
               
               Cow position:chr13:20679566-20679205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:95-455
               
               
               Cow position:chr13:54344997-54344647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 190

               
               
               Conread position:95-521
               
               
               Cow position:chr13:59687658-59688069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:95-537
               
               
               Cow position:chr13:5263065-5263500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:95-550
               
               
               Cow position:chr13:40491454-40490978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 224

               
               
               Conread position:96-238
               
               
               Cow position:chr13:43812304-43812157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:96-241
               
               
               Cow position:chr13:43839325-43839475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:96-264
               
               
               Cow position:chr13:21904882-21904717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):131, 63

               
               
               Conread position:96-266
               
               
               Cow position:chr13:11147526-11147354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:96-412
               
               
               Cow position:chr13:11954893-11955208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 65

               
               
               Conread position:96-446
               
               
               Cow position:chr13:47356848-47356527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:96-459
               
               
               Cow position:chr13:9643662-9644018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 188

               
               
               Conread position:96-536
               
               
               Cow position:chr13:18491814-18491386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 36

               
               
               Conread position:97-458
               
               
               Cow position:chr13:17347026-17346674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):125, 77

               
               
               Conread position:97-461
               
               
               Cow position:chr13:17004373-17004732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):129, 51

               
               
               Conread position:97-469
               
               
               Cow position:chr13:18172559-18172188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:98-231
               
               
               Cow position:chr13:17270178-17270047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:100-462
               
               
               Cow position:chr13:37804095-37803750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 43

               
               
               Conread position:100-533
               
               
               Cow position:chr13:8245116-8245532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 177

               
               
               Conread position:102-509
               
               
               Cow position:chr13:52227886-52228292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:102-526
               
               
               Cow position:chr13:15257164-15257578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):354, 118

               
               
               Conread position:102-527
               
               
               Cow position:chr13:2192922-2192525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):173, 71

               
               
               Conread position:103-208
               
               
               Cow position:chr13:17457082-17457187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:103-223
               
               
               Cow position:chr13:18535093-18535213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:103-524
               
               
               Cow position:chr13:19022491-19022055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 61

               
               
               Conread position:104-402
               
               
               Cow position:chr13:60341026-60340725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):118, 205

               
               
               Conread position:104-440
               
               
               Cow position:chr13:15528819-15529156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 10

               
               
               Conread position:106-345
               
               
               Cow position:chr13:51108701-51108467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):112, 65

               
               
               Conread position:107-549
               
               
               Cow position:chr13:37775017-37775437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 67

               
               
               Conread position:108-552
               
               
               Cow position:chr13:13339072-13338623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):119, 202

               
               
               Conread position:109-524
               
               
               Cow position:chr13:48598111-48597700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 53

               
               
               Conread position:110-552
               
               
               Cow position:chr13:46112173-46111730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 61

               
               
               Conread position:112-527
               
               
               Cow position:chr13:19223853-19223439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 171

               
               
               Conread position:112-527
               
               
               Cow position:chr13:37592734-37593158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 62

               
               
               Conread position:113-527
               
               
               Cow position:chr13:20088495-20088931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:114-549
               
               
               Cow position:chr13:52749286-52749694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:116-260
               
               
               Cow position:chr13:4423280-4423423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 44

               
               
               Conread position:116-314
               
               
               Cow position:chr13:2302638-2302836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:116-461
               
               
               Cow position:chr13:61990134-61990462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:116-524
               
               
               Cow position:chr13:24230413-24230001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:116-527
               
               
               Cow position:chr13:20509932-20509515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):103, 62

               
               
               Conread position:116-550
               
               
               Cow position:chr13:61188735-61188293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:117-502
               
               
               Cow position:chr13:26369725-26369344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:117-527
               
               
               Cow position:chr13:23512558-23512168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):100, 39

               
               
               Conread position:118-456
               
               
               Cow position:chr13:547686-547360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 42

               
               
               Conread position:121-516
               
               
               Cow position:chr13:48165234-48165624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:124-264
               
               
               Cow position:chr13:5079033-5079170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:125-396
               
               
               Cow position:chr13:7032482-7032217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:125-453
               
               
               Cow position:chr13:21283515-21283836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 134

               
               
               Conread position:125-532
               
               
               Cow position:chr13:15991031-15991448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 175

               
               
               Conread position:126-335
               
               
               Cow position:chr13:32669022-32668813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):92, 170

               
               
               Conread position:126-552
               
               
               Cow position:chr13:9846264-9846698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:127-449
               
               
               Cow position:chr13:14771650-14771324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):99, 297

               
               
               Conread position:129-352
               
               
               Cow position:chr13:40533073-40532857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 52

               
               
               Conread position:129-462
               
               
               Cow position:chr13:2404930-2404621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 139

               
               
               Conread position:129-534
               
               
               Cow position:chr13:55583386-55582976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 60

               
               
               Conread position:130-398
               
               
               Cow position:chr13:34904397-34904137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):205, 92

               
               
               Conread position:130-519
               
               
               Cow position:chr13:48375452-48375819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 150

               
               
               Conread position:131-265
               
               
               Cow position:chr13:24767574-24767438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:131-410
               
               
               Cow position:chr13:12618924-12619205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 154

               
               
               Conread position:131-552
               
               
               Cow position:chr13:47186409-47185993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:132-368
               
               
               Cow position:chr13:50546036-50545801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):86, 57

               
               
               Conread position:132-537
               
               
               Cow position:chr13:6540129-6540523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 23

               
               
               Conread position:133-335
               
               
               Cow position:chr13:21189464-21189260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 147

               
               
               Conread position:133-355
               
               
               Cow position:chr13:62474616-62474833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:133-452
               
               
               Cow position:chr13:5082837-5082520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 145

               
               
               Conread position:133-461
               
               
               Cow position:chr13:11644116-11643799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:133-524
               
               
               Cow position:chr13:49503345-49503747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 71

               
               
               Conread position:134-532
               
               
               Cow position:chr13:52055414-52055810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:134-546
               
               
               Cow position:chr13:19188486-19188082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 41

               
               
               Conread position:135-387
               
               
               Cow position:chr13:56605289-56605544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 157

               
               
               Conread position:135-409
               
               
               Cow position:chr13:7488724-7488453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 149

               
               
               Conread position:135-551
               
               
               Cow position:chr13:5758164-5758568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 39

               
               
               Conread position:136-246
               
               
               Cow position:chr13:966257-966145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:138-527
               
               
               Cow position:chr13:49824205-49823811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:138-544
               
               
               Cow position:chr13:49022692-49023097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 108

               
               
               Conread position:139-474
               
               
               Cow position:chr13:15110501-15110163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):86, 301

               
               
               Conread position:141-515
               
               
               Cow position:chr13:14016390-14016762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 160

               
               
               Conread position:144-537
               
               
               Cow position:chr13:20473515-20473897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 80

               
               
               Conread position:146-462
               
               
               Cow position:chr13:4420517-4420189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:147-525
               
               
               Cow position:chr13:29831265-29831637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:148-525
               
               
               Cow position:chr13:13954220-13954606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 26

               
               
               Conread position:149-552
               
               
               Cow position:chr13:28689637-28689241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:150-523
               
               
               Cow position:chr13:20580075-20579710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:150-550
               
               
               Cow position:chr13:867294-866898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:151-441
               
               
               Cow position:chr13:15903182-15902904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:152-552
               
               
               Cow position:chr13:17568930-17569332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 161

               
               
               Conread position:159-535
               
               
               Cow position:chr13:54583038-54582654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 233

               
               
               Conread position:159-543
               
               
               Cow position:chr13:25496167-25495780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):60, 143

               
               
               Conread position:160-368
               
               
               Cow position:chr13:28652959-28652756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:162-525
               
               
               Cow position:chr13:6849088-6848714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:163-535
               
               
               Cow position:chr13:15195047-15195421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 144

               
               
               Conread position:163-549
               
               
               Cow position:chr13:6931072-6930691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:163-552
               
               
               Cow position:chr13:49507692-49508066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:164-358
               
               
               Cow position:chr13:7790170-7789972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 118

               
               
               Conread position:164-440
               
               
               Cow position:chr13:38033838-38033559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 96

               
               
               Conread position:164-527
               
               
               Cow position:chr13:28139722-28139369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 54

               
               
               Conread position:164-532
               
               
               Cow position:chr13:9900305-9899927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:164-548
               
               
               Cow position:chr13:19581931-19582313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):57, 128

               
               
               Conread position:166-417
               
               
               Cow position:chr13:62601159-62600911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 108

               
               
               Conread position:166-527
               
               
               Cow position:chr13:38698205-38697845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:167-524
               
               
               Cow position:chr13:26743276-26742916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 30

               
               
               Conread position:169-512
               
               
               Cow position:chr13:54388870-54389215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:171-455
               
               
               Cow position:chr13:18696991-18696707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 248

               
               
               Conread position:171-527
               
               
               Cow position:chr13:26698348-26698709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 127

               
               
               Conread position:174-387
               
               
               Cow position:chr13:20128811-20128600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 128

               
               
               Conread position:174-452
               
               
               Cow position:chr13:43829398-43829113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:174-474
               
               
               Cow position:chr13:39368101-39367803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):92, 74

               
               
               Conread position:174-505
               
               
               Cow position:chr13:13238723-13238396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:174-519
               
               
               Cow position:chr13:6441954-6442311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:174-532
               
               
               Cow position:chr13:8374626-8374978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 134

               
               
               Conread position:174-532
               
               
               Cow position:chr13:20180563-20180216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 129

               
               
               Conread position:174-551
               
               
               Cow position:chr13:5671446-5671822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 40

               
               
               Conread position:174-552
               
               
               Cow position:chr13:1363840-1363451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:174-552
               
               
               Cow position:chr13:18999688-18999293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:175-375
               
               
               Cow position:chr13:14870674-14870478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:175-447
               
               
               Cow position:chr13:17966064-17966335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:175-451
               
               
               Cow position:chr13:49520677-49520953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 108

               
               
               Conread position:175-537
               
               
               Cow position:chr13:3160536-3160179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 67

               
               
               Conread position:175-548
               
               
               Cow position:chr13:18058104-18058477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:176-456
               
               
               Cow position:chr13:37640730-37640455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 64

               
               
               Conread position:176-514
               
               
               Cow position:chr13:11808702-11808382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:177-417
               
               
               Cow position:chr13:52929852-52929615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:177-448
               
               
               Cow position:chr13:8555606-8555338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:177-452
               
               
               Cow position:chr13:11381579-11381854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:177-537
               
               
               Cow position:chr13:20360413-20360052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:177-547
               
               
               Cow position:chr13:9800646-9800286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:178-552
               
               
               Cow position:chr13:2823001-2822632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):145, 88

               
               
               Conread position:180-389
               
               
               Cow position:chr13:6455508-6455307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):174, 24

               
               
               Conread position:181-449
               
               
               Cow position:chr13:51115889-51116152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:182-390
               
               
               Cow position:chr13:10098853-10099056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:183-525
               
               
               Cow position:chr13:20288466-20288128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:183-527
               
               
               Cow position:chr13:6663614-6663968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):136, 37

               
               
               Conread position:184-459
               
               
               Cow position:chr13:62518196-62518463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:186-523
               
               
               Cow position:chr13:14878818-14879163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:186-551
               
               
               Cow position:chr13:25579053-25579430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:189-532
               
               
               Cow position:chr13:2803599-2803269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:190-462
               
               
               Cow position:chr13:25381092-25380820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:190-516
               
               
               Cow position:chr13:18929661-18929324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:191-535
               
               
               Cow position:chr13:21280358-21280721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:192-463
               
               
               Cow position:chr13:15144244-15144506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:192-518
               
               
               Cow position:chr13:20217260-20217601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:192-524
               
               
               Cow position:chr13:1569051-1568725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):37, 148

               
               
               Conread position:196-524
               
               
               Cow position:chr13:11202156-11201829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:197-533
               
               
               Cow position:chr13:60375365-60375706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:198-543
               
               
               Cow position:chr13:21135777-21136140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 87

               
               
               Conread position:199-434
               
               
               Cow position:chr13:34555711-34555941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:200-455
               
               
               Cow position:chr13:51901708-51901450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):100, 24

               
               
               Conread position:201-524
               
               
               Cow position:chr13:5060864-5060529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:202-547
               
               
               Cow position:chr13:15194614-15194951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:203-537
               
               
               Cow position:chr13:19240553-19240219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:204-514
               
               
               Cow position:chr13:18995244-18994923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:204-525
               
               
               Cow position:chr13:14576322-14576005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 76

               
               
               Conread position:204-549
               
               
               Cow position:chr13:20357777-20358121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:205-527
               
               
               Cow position:chr13:30258961-30258636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):246, 68

               
               
               Conread position:206-443
               
               
               Cow position:chr13:56678129-56677893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:206-453
               
               
               Cow position:chr13:8402169-8401923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:207-524
               
               
               Cow position:chr13:47322291-47322601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:208-549
               
               
               Cow position:chr13:19279203-19278862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:209-455
               
               
               Cow position:chr13:19320646-19320396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):20, 72

               
               
               Conread position:213-454
               
               
               Cow position:chr13:55728006-55727769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:213-512
               
               
               Cow position:chr13:20155107-20154809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:215-456
               
               
               Cow position:chr13:8355302-8355070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:216-462
               
               
               Cow position:chr13:13297775-13297538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:216-468
               
               
               Cow position:chr13:3989305-3989057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 182

               
               
               Conread position:216-524
               
               
               Cow position:chr13:46329503-46329812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:216-526
               
               
               Cow position:chr13:46044260-46043963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:216-541
               
               
               Cow position:chr13:16714160-16714490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):50, 59

               
               
               Conread position:217-459
               
               
               Cow position:chr13:47022460-47022226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:217-537
               
               
               Cow position:chr13:54128491-54128819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:217-544
               
               
               Cow position:chr13:620159-620475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:218-548
               
               
               Cow position:chr13:13196342-13196010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:223-535
               
               
               Cow position:chr13:52477551-52477865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 79

               
               
               Conread position:225-443
               
               
               Cow position:chr13:11397366-11397570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:225-461
               
               
               Cow position:chr13:23526202-23525970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):185, 55

               
               
               Conread position:225-516
               
               
               Cow position:chr13:50750961-50751253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):74, 82

               
               
               Conread position:225-527
               
               
               Cow position:chr13:16038200-16038495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):220, 70

               
               
               Conread position:225-527
               
               
               Cow position:chr13:25978098-25978406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:225-552
               
               
               Cow position:chr13:56034766-56035092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):238, 77

               
               
               Conread position:226-551
               
               
               Cow position:chr13:7265033-7265342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:227-456
               
               
               Cow position:chr13:3211642-3211414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:228-514
               
               
               Cow position:chr13:19778758-19779054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:228-546
               
               
               Cow position:chr13:45073167-45073477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:229-496
               
               
               Cow position:chr13:20871478-20871212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):75, 81

               
               
               Conread position:232-433
               
               
               Cow position:chr13:48862010-48862207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:233-550
               
               
               Cow position:chr13:20137909-20137580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:235-527
               
               
               Cow position:chr13:11565917-11565627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:238-551
               
               
               Cow position:chr13:7149308-7148999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):120, 45

               
               
               Conread position:241-449
               
               
               Cow position:chr13:9981764-9981968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:244-495
               
               
               Cow position:chr13:827316-827070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:244-527
               
               
               Cow position:chr13:20868682-20868957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:247-524
               
               
               Cow position:chr13:42672351-42672639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:277-527
               
               
               Cow position:chr13:20314579-20314837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):166, 34

               
               
               Conread position:279-462
               
               
               Cow position:chr13:8350370-8350179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:280-436
               
               
               Cow position:chr13:29123343-29123189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:280-462
               
               
               Cow position:chr13:14749668-14749486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:280-505
               
               
               Cow position:chr13:13211925-13211698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:280-520
               
               
               Cow position:chr13:20534932-20534695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):173, 21

               
               
               Conread position:280-523
               
               
               Cow position:chr13:35557067-35557319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:280-527
               
               
               Cow position:chr13:19007970-19007731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):187, 25

               
               
               Conread position:280-547
               
               
               Cow position:chr13:21170567-21170296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:280-547
               
               
               Cow position:chr13:55494482-55494751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 221

               
               
               Conread position:281-443
               
               
               Cow position:chr13:18181736-18181897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:281-534
               
               
               Cow position:chr13:17611513-17611770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 22

               
               
               Conread position:281-546
               
               
               Cow position:chr13:11103154-11103436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):61, 24

               
               
               Conread position:281-551
               
               
               Cow position:chr13:41549750-41550041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:282-456
               
               
               Cow position:chr13:48465793-48465965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:282-472
               
               
               Cow position:chr13:9117534-9117716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:282-490
               
               
               Cow position:chr13:16160458-16160245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:282-491
               
               
               Cow position:chr13:29663066-29662861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):199, 52

               
               
               Conread position:282-522
               
               
               Cow position:chr13:12673258-12673495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:282-525
               
               
               Cow position:chr13:38035872-38035629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 19

               
               
               Conread position:282-526
               
               
               Cow position:chr13:20115289-20115033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:282-527
               
               
               Cow position:chr13:18197571-18197819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 23

               
               
               Conread position:282-527
               
               
               Cow position:chr13:62008148-62007895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:282-532
               
               
               Cow position:chr13:16020888-16020642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:282-548
               
               
               Cow position:chr13:17822915-17823182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:282-550
               
               
               Cow position:chr13:28440499-28440768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):168, 93

               
               
               Conread position:283-456
               
               
               Cow position:chr13:8478438-8478268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):165, 26

               
               
               Conread position:283-537
               
               
               Cow position:chr13:25504568-25504313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 19

               
               
               Conread position:285-449
               
               
               Cow position:chr13:31529912-31529750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:286-527
               
               
               Cow position:chr13:45108380-45108613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:289-526
               
               
               Cow position:chr13:24692990-24692747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:290-455
               
               
               Cow position:chr13:43525205-43525368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:292-551
               
               
               Cow position:chr13:45439550-45439298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 6

               
               
               Conread position:293-516
               
               
               Cow position:chr13:8667647-8667414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:293-532
               
               
               Cow position:chr13:52459457-52459692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):5, 11

               
               
               Conread position:293-547
               
               
               Cow position:chr13:56535483-56535233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:294-490
               
               
               Cow position:chr13:47193407-47193221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 6

               
               
               Conread position:294-529
               
               
               Cow position:chr13:14034968-14035213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):148, 126

               
               
               Conread position:294-537
               
               
               Cow position:chr13:1462268-1462512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):5, 59

               
               
               Conread position:294-546
               
               
               Cow position:chr13:45130543-45130287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:295-437
               
               
               Cow position:chr13:47634532-47634391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:295-462
               
               
               Cow position:chr13:15460750-15460917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:295-546
               
               
               Cow position:chr13:33601205-33601458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:295-551
               
               
               Cow position:chr13:84601-84357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):140, 11

               
               
               Conread position:295-552
               
               
               Cow position:chr13:39939550-39939803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):165, 53

               
               
               Conread position:296-517
               
               
               Cow position:chr13:18340558-18340328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:296-540
               
               
               Cow position:chr13:11434550-11434801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):137, 126

               
               
               Conread position:297-455
               
               
               Cow position:chr13:62304804-62304967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 59

               
               
               Conread position:297-552
               
               
               Cow position:chr13:3209296-3209561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:298-545
               
               
               Cow position:chr13:50589305-50589564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:299-462
               
               
               Cow position:chr13:24110501-24110339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:301-527
               
               
               Cow position:chr13:49205017-49204800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):188, 11

               
               
               Conread position:302-535
               
               
               Cow position:chr13:55765158-55765398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):5, 121

               
               
               Conread position:303-527
               
               
               Cow position:chr13:47675918-47676149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):150, 8

               
               
               Conread position:303-535
               
               
               Cow position:chr13:37614174-37614418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 8

               
               
               Conread position:304-456
               
               
               Cow position:chr13:51813918-51814067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 49

               
               
               Conread position:304-461
               
               
               Cow position:chr13:37621343-37621497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:139
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:304-461
               
               
               Cow position:chr13:49255218-49255379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 152

               
               
               Conread position:304-527
               
               
               Cow position:chr13:21171553-21171784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:304-527
               
               
               Cow position:chr13:50646619-50646841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):152, 5

               
               
               Conread position:304-527
               
               
               Cow position:chr13:58763601-58763821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:304-531
               
               
               Cow position:chr13:19598649-19598880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):149, 17

               
               
               Conread position:304-537
               
               
               Cow position:chr13:17089503-17089736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 129

               
               
               Conread position:304-551
               
               
               Cow position:chr13:14927276-14927017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 5

               
               
               Conread position:304-551
               
               
               Cow position:chr13:15083676-15083428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):154, 63

               
               
               Conread position:304-551
               
               
               Cow position:chr13:21980958-21981203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:305-514
               
               
               Cow position:chr13:20090363-20090566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):158, 77

               
               
               Conread position:305-527
               
               
               Cow position:chr13:9161938-9161722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:305-532
               
               
               Cow position:chr13:7046886-7046663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:305-537
               
               
               Cow position:chr13:15757136-15756894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):138, 97

               
               
               Conread position:305-549
               
               
               Cow position:chr13:15997050-15996803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):128, 115

               
               
               Conread position:306-516
               
               
               Cow position:chr13:12974829-12974614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:306-517
               
               
               Cow position:chr13:50568391-50568601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):147, 93

               
               
               Conread position:306-526
               
               
               Cow position:chr13:2776303-2776073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:306-527
               
               
               Cow position:chr13:24215658-24215889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:306-528
               
               
               Cow position:chr13:42640397-42640167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):185, 32

               
               
               Conread position:306-540
               
               
               Cow position:chr13:8233013-8232793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:306-549
               
               
               Cow position:chr13:14645066-14644820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:307-546
               
               
               Cow position:chr13:15239500-15239742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):138, 73

               
               
               Conread position:308-532
               
               
               Cow position:chr13:33974746-33974529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:308-540
               
               
               Cow position:chr13:20520074-20519846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:309-449
               
               
               Cow position:chr13:25428212-25428351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:309-516
               
               
               Cow position:chr13:58149312-58149101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 133

               
               
               Conread position:309-522
               
               
               Cow position:chr13:56958980-56958769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 57

               
               
               Conread position:309-524
               
               
               Cow position:chr13:6926529-6926303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:309-525
               
               
               Cow position:chr13:50582808-50583028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:309-526
               
               
               Cow position:chr13:1147139-1147362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 35

               
               
               Conread position:309-527
               
               
               Cow position:chr13:7149500-7149711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:309-532
               
               
               Cow position:chr13:57985926-57986151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:309-537
               
               
               Cow position:chr13:26492284-26492508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:309-546
               
               
               Cow position:chr13:27181053-27180808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):136, 120

               
               
               Conread position:309-548
               
               
               Cow position:chr13:40541093-40541340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):141, 227

               
               
               Conread position:309-550
               
               
               Cow position:chr13:15993398-15993149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):146, 92

               
               
               Conread position:310-462
               
               
               Cow position:chr13:17563751-17563599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:310-527
               
               
               Cow position:chr13:9707738-9707959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):150, 96

               
               
               Conread position:310-532
               
               
               Cow position:chr13:13775233-13775470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:310-546
               
               
               Cow position:chr13:584863-585107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):146, 57

               
               
               Conread position:311-455
               
               
               Cow position:chr13:19750725-19750581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:312-535
               
               
               Cow position:chr13:14411904-14411671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):116, 77

               
               
               Conread position:312-537
               
               
               Cow position:chr13:47243546-47243773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):133, 40

               
               
               Conread position:312-541
               
               
               Cow position:chr13:10522943-10522711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):141, 64

               
               
               Conread position:312-551
               
               
               Cow position:chr13:12923882-12923638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):127, 7

               
               
               Conread position:314-550
               
               
               Cow position:chr13:28536315-28536554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):139, 47

               
               
               Conread position:316-527
               
               
               Cow position:chr13:42849128-42849342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:319-527
               
               
               Cow position:chr13:6980922-6980713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:319-535
               
               
               Cow position:chr13:15061479-15061709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 191

               
               
               Conread position:321-439
               
               
               Cow position:chr13:18866727-18866608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:321-455
               
               
               Cow position:chr13:52880868-52880998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:321-456
               
               
               Cow position:chr13:37527953-37528088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:321-514
               
               
               Cow position:chr13:20795210-20795407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:321-525
               
               
               Cow position:chr13:49356049-49356259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:321-527
               
               
               Cow position:chr13:8450330-8450121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:321-527
               
               
               Cow position:chr13:48378531-48378733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:321-532
               
               
               Cow position:chr13:26726606-26726827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:321-547
               
               
               Cow position:chr13:28071873-28071646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 176

               
               
               Conread position:322-550
               
               
               Cow position:chr13:52640949-52641188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:322-552
               
               
               Cow position:chr13:45593916-45593685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):138, 61

               
               
               Conread position:322-552
               
               
               Cow position:chr13:57769990-57770221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 55

               
               
               Conread position:323-490
               
               
               Cow position:chr13:38702878-38703054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:323-491
               
               
               Cow position:chr13:54652331-54652494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:323-514
               
               
               Cow position:chr13:6465692-6465882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:323-522
               
               
               Cow position:chr13:52536563-52536364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 143

               
               
               Conread position:323-524
               
               
               Cow position:chr13:18092877-18093078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 59

               
               
               Conread position:323-525
               
               
               Cow position:chr13:48222550-48222759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):132, 170

               
               
               Conread position:323-549
               
               
               Cow position:chr13:10210661-10210888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:323-552
               
               
               Cow position:chr13:6183422-6183652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 151

               
               
               Conread position:323-552
               
               
               Cow position:chr13:15143845-15144066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:323-552
               
               
               Cow position:chr13:17813469-17813231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):132, 158

               
               
               Conread position:324-537
               
               
               Cow position:chr13:6486254-6486474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):126, 47

               
               
               Conread position:325-431
               
               
               Cow position:chr13:60393780-60393674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:325-462
               
               
               Cow position:chr13:21295071-21294934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:325-537
               
               
               Cow position:chr13:16908213-16907991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:325-551
               
               
               Cow position:chr13:49796019-49795799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:326-527
               
               
               Cow position:chr13:21902387-21902192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):131, 76

               
               
               Conread position:326-533
               
               
               Cow position:chr13:15069952-15069754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:326-552
               
               
               Cow position:chr13:2393381-2393152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 81

               
               
               Conread position:327-517
               
               
               Cow position:chr13:4404525-4404332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):126, 148

               
               
               Conread position:327-537
               
               
               Cow position:chr13:8699743-8699964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):137, 214

               
               
               Conread position:328-514
               
               
               Cow position:chr13:38012325-38012140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:328-527
               
               
               Cow position:chr13:21188360-21188170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:328-552
               
               
               Cow position:chr13:17057855-17058094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:328-552
               
               
               Cow position:chr13:28439403-28439177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):5, 160

               
               
               Conread position:330-552
               
               
               Cow position:chr13:53850815-53850583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:332-462
               
               
               Cow position:chr13:6962441-6962312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:332-535
               
               
               Cow position:chr13:24094328-24094538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:332-546
               
               
               Cow position:chr13:50622823-50623042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 103

               
               
               Conread position:333-544
               
               
               Cow position:chr13:49283792-49284008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:333-552
               
               
               Cow position:chr13:15060628-15060416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):102, 123

               
               
               Conread position:334-462
               
               
               Cow position:chr13:40634852-40634723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:334-552
               
               
               Cow position:chr13:13283334-13283103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:335-546
               
               
               Cow position:chr13:33854698-33854911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 168

               
               
               Conread position:336-527
               
               
               Cow position:chr13:58422054-58421878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:336-552
               
               
               Cow position:chr13:51249395-51249614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):108, 148

               
               
               Conread position:339-442
               
               
               Cow position:chr13:16156243-16156346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:339-462
               
               
               Cow position:chr13:1075057-1075180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:339-527
               
               
               Cow position:chr13:11942197-11942387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):156, 121

               
               
               Conread position:339-527
               
               
               Cow position:chr13:21277485-21277669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:339-532
               
               
               Cow position:chr13:22601713-22601903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:340-469
               
               
               Cow position:chr13:12237426-12237297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:340-515
               
               
               Cow position:chr13:10711434-10711614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):118, 171

               
               
               Conread position:341-497
               
               
               Cow position:chr13:9391540-9391382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):112, 151

               
               
               Conread position:341-527
               
               
               Cow position:chr13:20042285-20042476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):115, 39

               
               
               Conread position:341-527
               
               
               Cow position:chr13:30396687-30396506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:341-527
               
               
               Cow position:chr13:31507464-31507654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):112, 94

               
               
               Conread position:341-527
               
               
               Cow position:chr13:52913853-52913664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:341-543
               
               
               Cow position:chr13:2339157-2338964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):184, 24

               
               
               Conread position:341-549
               
               
               Cow position:chr13:11410694-11410473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:341-551
               
               
               Cow position:chr13:18997368-18997162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):77, 104

               
               
               Conread position:341-552
               
               
               Cow position:chr13:3594300-3594095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:341-552
               
               
               Cow position:chr13:37554894-37555108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 31

               
               
               Conread position:342-487
               
               
               Cow position:chr13:16790188-16790041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:342-549
               
               
               Cow position:chr13:10220942-10220725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 199

               
               
               Conread position:343-443
               
               
               Cow position:chr13:26011069-26010968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:343-550
               
               
               Cow position:chr13:369145-369359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 75

               
               
               Conread position:344-527
               
               
               Cow position:chr13:3153727-3153535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:344-543
               
               
               Cow position:chr13:30148586-30148783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):112, 151

               
               
               Conread position:344-546
               
               
               Cow position:chr13:9124901-9124695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):116, 54

               
               
               Conread position:344-546
               
               
               Cow position:chr13:41979172-41979370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:344-546
               
               
               Cow position:chr13:45499206-45499000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 76

               
               
               Conread position:344-547
               
               
               Cow position:chr13:26423028-26422804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:344-552
               
               
               Cow position:chr13:37030319-37030110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 83

               
               
               Conread position:345-443
               
               
               Cow position:chr13:37984153-37984250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:346-537
               
               
               Cow position:chr13:3149458-3149656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:346-537
               
               
               Cow position:chr13:6012747-6012942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:346-544
               
               
               Cow position:chr13:22345302-22345504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):112, 29

               
               
               Conread position:347-498
               
               
               Cow position:chr13:6975871-6976026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:347-532
               
               
               Cow position:chr13:16163556-16163370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):109, 150

               
               
               Conread position:347-535
               
               
               Cow position:chr13:16099147-16099349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:347-537
               
               
               Cow position:chr13:23478872-23478678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:347-545
               
               
               Cow position:chr13:42302066-42302272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:347-550
               
               
               Cow position:chr13:29805046-29805243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:347-551
               
               
               Cow position:chr13:11147031-11146820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):106, 192

               
               
               Conread position:347-551
               
               
               Cow position:chr13:23975193-23975404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:347-552
               
               
               Cow position:chr13:8392923-8393119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:347-552
               
               
               Cow position:chr13:21246735-21246951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:349-456
               
               
               Cow position:chr13:18701345-18701237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:349-522
               
               
               Cow position:chr13:62474869-62475034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:349-527
               
               
               Cow position:chr13:34532960-34533141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 72

               
               
               Conread position:349-527
               
               
               Cow position:chr13:41115814-41115627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:349-548
               
               
               Cow position:chr13:18970948-18970750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:350-546
               
               
               Cow position:chr13:19222645-19222444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:350-552
               
               
               Cow position:chr13:21024957-21024749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:351-550
               
               
               Cow position:chr13:56019025-56019230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:352-525
               
               
               Cow position:chr13:57356011-57355847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:353-524
               
               
               Cow position:chr13:8240629-8240469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:353-552
               
               
               Cow position:chr13:390672-390874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):75, 67

               
               
               Conread position:354-520
               
               
               Cow position:chr13:52027170-52027341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:354-522
               
               
               Cow position:chr13:1037606-1037429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:354-527
               
               
               Cow position:chr13:29802582-29802415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:354-532
               
               
               Cow position:chr13:1363422-1363243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:354-533
               
               
               Cow position:chr13:5092427-5092613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:354-537
               
               
               Cow position:chr13:57323113-57322926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:354-550
               
               
               Cow position:chr13:24107581-24107778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):109, 178

               
               
               Conread position:354-552
               
               
               Cow position:chr13:10758095-10757904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:354-552
               
               
               Cow position:chr13:24796845-24796648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 81

               
               
               Conread position:354-552
               
               
               Cow position:chr13:26959830-26960031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 181

               
               
               Conread position:355-517
               
               
               Cow position:chr13:52249082-52249246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):114, 151

               
               
               Conread position:355-523
               
               
               Cow position:chr13:16525257-16525436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:355-546
               
               
               Cow position:chr13:6865699-6865895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:355-552
               
               
               Cow position:chr13:48127074-48126867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:356-455
               
               
               Cow position:chr13:20826758-20826858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:356-527
               
               
               Cow position:chr13:28376595-28376774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:356-532
               
               
               Cow position:chr13:52891198-52891033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:356-552
               
               
               Cow position:chr13:23685034-23685241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:357-462
               
               
               Cow position:chr13:28652705-28652600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:357-462
               
               
               Cow position:chr13:47644028-47643919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:357-490
               
               
               Cow position:chr13:13286414-13286546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):6, 78

               
               
               Conread position:357-527
               
               
               Cow position:chr13:48373354-48373528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:357-546
               
               
               Cow position:chr13:50565349-50565542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 64

               
               
               Conread position:357-547
               
               
               Cow position:chr13:19178142-19177938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 72

               
               
               Conread position:357-547
               
               
               Cow position:chr13:19427599-19427405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:357-551
               
               
               Cow position:chr13:25679285-25679088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:357-551
               
               
               Cow position:chr13:53357797-53357595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 182

               
               
               Conread position:358-524
               
               
               Cow position:chr13:55143236-55143065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:358-526
               
               
               Cow position:chr13:9687717-9687880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:358-532
               
               
               Cow position:chr13:13265524-13265347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):102, 77

               
               
               Conread position:361-532
               
               
               Cow position:chr13:8367675-8367501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:362-454
               
               
               Cow position:chr13:17619851-17619759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:362-532
               
               
               Cow position:chr13:21425871-21426036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):99, 56

               
               
               Conread position:362-552
               
               
               Cow position:chr13:28605431-28605629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):11, 177

               
               
               Conread position:363-525
               
               
               Cow position:chr13:20529509-20529662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:363-535
               
               
               Cow position:chr13:28081680-28081496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:363-535
               
               
               Cow position:chr13:55713478-55713646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):163, 94

               
               
               Conread position:365-526
               
               
               Cow position:chr13:26395417-26395248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:365-526
               
               
               Cow position:chr13:37723536-37723377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:365-527
               
               
               Cow position:chr13:1339185-1339357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:365-527
               
               
               Cow position:chr13:43576970-43576798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:365-540
               
               
               Cow position:chr13:4135839-4135653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:366-525
               
               
               Cow position:chr13:37946434-37946596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:366-528
               
               
               Cow position:chr13:13225843-13225683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:366-533
               
               
               Cow position:chr13:37405666-37405496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:366-550
               
               
               Cow position:chr13:40483026-40483215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 9

               
               
               Conread position:367-455
               
               
               Cow position:chr13:19467384-19467471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:367-523
               
               
               Cow position:chr13:23399720-23399558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:367-524
               
               
               Cow position:chr13:7097541-7097377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:367-527
               
               
               Cow position:chr13:5175551-5175387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:367-537
               
               
               Cow position:chr13:4965344-4965177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:367-549
               
               
               Cow position:chr13:10423475-10423283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:368-527
               
               
               Cow position:chr13:27198861-27198702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 125

               
               
               Conread position:368-535
               
               
               Cow position:chr13:13533712-13533882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:368-535
               
               
               Cow position:chr13:53619957-53619780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:369-546
               
               
               Cow position:chr13:22729450-22729639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):70, 51

               
               
               Conread position:369-552
               
               
               Cow position:chr13:23823082-23823264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):91, 50

               
               
               Conread position:370-548
               
               
               Cow position:chr13:25062126-25061952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):31, 7

               
               
               Conread position:371-527
               
               
               Cow position:chr13:6951529-6951368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 134

               
               
               Conread position:371-527
               
               
               Cow position:chr13:30809424-30809587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:371-552
               
               
               Cow position:chr13:47538210-47538387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:372-516
               
               
               Cow position:chr13:57446170-57446314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:372-525
               
               
               Cow position:chr13:20854507-20854670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 63

               
               
               Conread position:372-527
               
               
               Cow position:chr13:714510-714676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:372-527
               
               
               Cow position:chr13:11231345-11231509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:372-527
               
               
               Cow position:chr13:34299910-34300060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:372-532
               
               
               Cow position:chr13:43342517-43342350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:372-540
               
               
               Cow position:chr13:5930356-5930536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 140

               
               
               Conread position:372-549
               
               
               Cow position:chr13:62260459-62260285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):162, 11

               
               
               Conread position:375-547
               
               
               Cow position:chr13:9551307-9551129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:375-547
               
               
               Cow position:chr13:21194840-21195017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:375-548
               
               
               Cow position:chr13:5659821-5659995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):81, 158

               
               
               Conread position:376-532
               
               
               Cow position:chr13:9108730-9108890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):78, 54

               
               
               Conread position:379-533
               
               
               Cow position:chr13:20864054-20864200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:379-546
               
               
               Cow position:chr13:14782284-14782118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:380-527
               
               
               Cow position:chr13:56431884-56432033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:380-534
               
               
               Cow position:chr13:47651475-47651635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:380-549
               
               
               Cow position:chr13:53847180-53847350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):80, 153

               
               
               Conread position:381-534
               
               
               Cow position:chr13:23795447-23795599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):144, 30

               
               
               Conread position:382-546
               
               
               Cow position:chr13:25313210-25313381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:383-525
               
               
               Cow position:chr13:16106352-16106211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:383-531
               
               
               Cow position:chr13:5873493-5873650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 125

               
               
               Conread position:383-537
               
               
               Cow position:chr13:10040622-10040777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:384-527
               
               
               Cow position:chr13:55007835-55007982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:385-547
               
               
               Cow position:chr13:20789581-20789754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:387-522
               
               
               Cow position:chr13:58157123-58157264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:387-523
               
               
               Cow position:chr13:3003410-3003278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 46

               
               
               Conread position:387-524
               
               
               Cow position:chr13:17815172-17815035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:389-552
               
               
               Cow position:chr13:25924290-25924468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:391-532
               
               
               Cow position:chr13:27727123-27726986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:392-552
               
               
               Cow position:chr13:8312328-8312479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:392-552
               
               
               Cow position:chr13:41474801-41474641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:395-552
               
               
               Cow position:chr13:62304497-62304331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:399-540
               
               
               Cow position:chr13:9612991-9612850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:402-541
               
               
               Cow position:chr13:46330017-46330164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 144

               
               
               Conread position:404-524
               
               
               Cow position:chr13:20624882-20624766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:405-551
               
               
               Cow position:chr13:48165830-48165976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 93

               
               
               Conread position:422-535
               
               
               Cow position:chr13:15529350-15529465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:426-527
               
               
               Cow position:chr13:58388597-58388495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:426-552
               
               
               Cow position:chr13:1931600-1931476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:452-535
               
               
               Cow position:chr13:62377430-62377514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:75
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 0
Show alignments to all cow chromosomes.