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Cow genome map

           
Conread name:
           
Ss1.1-rfbs3918b_e17.5
        

               
Conread position:
               
12-525
               

               
Cow position:
               
chr24:33621831-33621306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 181
               

               
Conread position:
               
13-304
               

               
Cow position:
               
chr24:3631173-3631456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
65, 135
               

               
Conread position:
               
25-264
               

               
Cow position:
               
chr24:28600945-28600707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
41, 118
               

               
Conread position:
               
25-351
               

               
Cow position:
               
chr24:14865192-14865520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 252
               

               
Conread position:
               
25-351
               

               
Cow position:
               
chr24:14867118-14867446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 252
               

               
Conread position:
               
25-430
               

               
Cow position:
               
chr24:27683777-27683388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 248
               

               
Conread position:
               
26-197
               

               
Cow position:
               
chr24:5624563-5624390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
28-363
               

               
Cow position:
               
chr24:40091904-40091573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
29-207
               

               
Cow position:
               
chr24:30892883-30892705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
29-447
               

               
Cow position:
               
chr24:29170640-29171048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
189, 29
               

               
Conread position:
               
29-527
               

               
Cow position:
               
chr24:35986047-35985559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
32-517
               

               
Cow position:
               
chr24:9222701-9222216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 200
               

               
Conread position:
               
36-370
               

               
Cow position:
               
chr24:30177915-30178251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 125
               

               
Conread position:
               
36-443
               

               
Cow position:
               
chr24:25991464-25991098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
36-452
               

               
Cow position:
               
chr24:18974880-18975301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
37-178
               

               
Cow position:
               
chr24:33052388-33052249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
41-230
               

               
Cow position:
               
chr24:6665800-6665606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
42-220
               

               
Cow position:
               
chr24:12090987-12091168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
42-359
               

               
Cow position:
               
chr24:39219161-39218841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
42-552
               

               
Cow position:
               
chr24:28690388-28690886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
43-214
               

               
Cow position:
               
chr24:43693060-43692888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
16, 92
               

               
Conread position:
               
43-217
               

               
Cow position:
               
chr24:25777562-25777384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr24:23051885-23051707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr24:25706146-25705966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr24:27229359-27229189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr24:33379741-33379917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 138
               

               
Conread position:
               
43-225
               

               
Cow position:
               
chr24:28911368-28911547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
43-229
               

               
Cow position:
               
chr24:16162484-16162664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
35, 61
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr24:36730187-36730375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
43-263
               

               
Cow position:
               
chr24:40346821-40346603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
175, 49
               

               
Conread position:
               
43-263
               

               
Cow position:
               
chr24:42916842-42916628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
43-265
               

               
Cow position:
               
chr24:27543790-27543568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
43-268
               

               
Cow position:
               
chr24:14319970-14319740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
43-321
               

               
Cow position:
               
chr24:43733656-43733933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
43-342
               

               
Cow position:
               
chr24:11876569-11876870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 133
               

               
Conread position:
               
43-427
               

               
Cow position:
               
chr24:23034351-23034735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
35, 232
               

               
Conread position:
               
43-527
               

               
Cow position:
               
chr24:11005348-11005847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
33, 239
               

               
Conread position:
               
43-532
               

               
Cow position:
               
chr24:27054094-27054569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
125, 25
               

               
Conread position:
               
43-550
               

               
Cow position:
               
chr24:6149716-6150202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
44-212
               

               
Cow position:
               
chr24:10760392-10760561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
44-217
               

               
Cow position:
               
chr24:16625814-16625643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
44-229
               

               
Cow position:
               
chr24:13238096-13238273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 123
               

               
Conread position:
               
44-266
               

               
Cow position:
               
chr24:5643895-5643666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 209
               

               
Conread position:
               
44-362
               

               
Cow position:
               
chr24:4689385-4689703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 232
               

               
Conread position:
               
44-369
               

               
Cow position:
               
chr24:15473045-15473367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
44-441
               

               
Cow position:
               
chr24:35332406-35332805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
44-449
               

               
Cow position:
               
chr24:2675018-2675399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 66
               

               
Conread position:
               
44-486
               

               
Cow position:
               
chr24:18025278-18024836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 28
               

               
Conread position:
               
45-163
               

               
Cow position:
               
chr24:16645918-16645798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
45-171
               

               
Cow position:
               
chr24:27754384-27754510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
45-185
               

               
Cow position:
               
chr24:34579173-34579315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-194
               

               
Cow position:
               
chr24:37037305-37037449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
45-204
               

               
Cow position:
               
chr24:27763490-27763647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
45-217
               

               
Cow position:
               
chr24:30768398-30768573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr24:4241009-4240832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr24:35653076-35653257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr24:36027496-36027318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 165
               

               
Conread position:
               
45-264
               

               
Cow position:
               
chr24:14279575-14279801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
45-265
               

               
Cow position:
               
chr24:21264818-21264600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 41
               

               
Conread position:
               
45-265
               

               
Cow position:
               
chr24:26846590-26846365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
45-268
               

               
Cow position:
               
chr24:15919390-15919620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
45-274
               

               
Cow position:
               
chr24:6341857-6342089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 199
               

               
Conread position:
               
45-361
               

               
Cow position:
               
chr24:42007434-42007741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
45-462
               

               
Cow position:
               
chr24:29673207-29673624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 128
               

               
Conread position:
               
45-532
               

               
Cow position:
               
chr24:19535556-19535071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
45-537
               

               
Cow position:
               
chr24:11839868-11840368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
45-548
               

               
Cow position:
               
chr24:38643324-38643831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
45-551
               

               
Cow position:
               
chr24:30235566-30236065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
45-552
               

               
Cow position:
               
chr24:32054359-32054843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 146
               

               
Conread position:
               
46-447
               

               
Cow position:
               
chr24:43364053-43364445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 114
               

               
Conread position:
               
46-546
               

               
Cow position:
               
chr24:7917681-7917183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 55
               

               
Conread position:
               
48-171
               

               
Cow position:
               
chr24:16844640-16844516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
48-199
               

               
Cow position:
               
chr24:12198331-12198178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
48-221
               

               
Cow position:
               
chr24:36710831-36711001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
30, 125
               

               
Conread position:
               
48-264
               

               
Cow position:
               
chr24:27465882-27465670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 116
               

               
Conread position:
               
48-440
               

               
Cow position:
               
chr24:20741013-20741402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
30, 123
               

               
Conread position:
               
48-467
               

               
Cow position:
               
chr24:6141265-6140847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
30, 56
               

               
Conread position:
               
48-527
               

               
Cow position:
               
chr24:12851426-12851869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
49-178
               

               
Cow position:
               
chr24:38655400-38655269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-187
               

               
Cow position:
               
chr24:40149376-40149237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
49-193
               

               
Cow position:
               
chr24:21770142-21770288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-193
               

               
Cow position:
               
chr24:32854230-32854376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-194
               

               
Cow position:
               
chr24:8021268-8021416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
49-200
               

               
Cow position:
               
chr24:228037-227883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-208
               

               
Cow position:
               
chr24:4616054-4615899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
29, 123
               

               
Conread position:
               
49-213
               

               
Cow position:
               
chr24:28335850-28335683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:5448374-5448201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:6443454-6443629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:9550281-9550454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:9590323-9590150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:15666718-15666545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
20, 123
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:16557991-16557818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:16610758-16610585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 40
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:17992982-17992810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:21104671-21104840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:22975828-22976001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:30766565-30766738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:32456118-32456291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:34213542-34213366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:35795591-35795417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:35822905-35822732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:38479272-38479110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:38588800-38588971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:39216933-39216760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:39729726-39729553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:40249701-40249874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr24:41006540-41006712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
49-221
               

               
Cow position:
               
chr24:20988308-20988140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
49-222
               

               
Cow position:
               
chr24:32360836-32360658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-223
               

               
Cow position:
               
chr24:36853911-36854087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-225
               

               
Cow position:
               
chr24:24002670-24002845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
49-227
               

               
Cow position:
               
chr24:39289708-39289884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 61
               

               
Conread position:
               
49-228
               

               
Cow position:
               
chr24:25269291-25269115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
49-229
               

               
Cow position:
               
chr24:8184110-8184286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
49-229
               

               
Cow position:
               
chr24:29040571-29040751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
102, 21
               

               
Conread position:
               
49-232
               

               
Cow position:
               
chr24:1272177-1271988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
49-233
               

               
Cow position:
               
chr24:28662876-28662697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
49-238
               

               
Cow position:
               
chr24:17159446-17159632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
169, 19
               

               
Conread position:
               
49-238
               

               
Cow position:
               
chr24:37975378-37975190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
49-250
               

               
Cow position:
               
chr24:27735879-27735681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
171, 35
               

               
Conread position:
               
49-256
               

               
Cow position:
               
chr24:38297079-38297291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-257
               

               
Cow position:
               
chr24:7301148-7301358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
49-257
               

               
Cow position:
               
chr24:22193417-22193631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-258
               

               
Cow position:
               
chr24:29845578-29845368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
49-262
               

               
Cow position:
               
chr24:18257378-18257168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 115
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr24:6161153-6160942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
169, 122
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr24:6340709-6340923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr24:20970100-20969892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr24:21252758-21252541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 204
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr24:35568881-35569091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr24:36486367-36486150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr24:40908708-40908929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr24:6436484-6436703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr24:12293716-12293937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr24:14124782-14125004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr24:23040395-23040617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 180
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr24:29606375-29606162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr24:32668962-32669184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
23, 199
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr24:37205184-37204970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
169, 33
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:193109-193328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:6085618-6085840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:11104129-11103903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:13880748-13880970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:15874938-15874716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:18847599-18847810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
169, 21
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:20604772-20604994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:20894836-20895058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 70
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:25710001-25709779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:26384965-26384743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:33238857-33238633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr24:35572179-35572397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
49-267
               

               
Cow position:
               
chr24:28689402-28689610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
30, 123
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr24:12447500-12447725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr24:15297139-15297362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 155
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr24:33571692-33571917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-272
               

               
Cow position:
               
chr24:42835503-42835731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-310
               

               
Cow position:
               
chr24:39066840-39066575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 234
               

               
Conread position:
               
49-334
               

               
Cow position:
               
chr24:18266480-18266188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
29, 240
               

               
Conread position:
               
49-335
               

               
Cow position:
               
chr24:27185654-27185941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 253
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr24:8754538-8754843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr24:8776998-8777307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr24:10655634-10655944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr24:12518836-12519146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr24:13497304-13497614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr24:16475486-16475796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr24:17456070-17456380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 242
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr24:27760544-27760854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr24:28353851-28354151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
183, 35
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr24:38488543-38488853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr24:18405612-18405312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr24:34315051-34315355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr24:2118893-2119207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 232
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr24:12697391-12697075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr24:36326380-36326696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr24:39253947-39254263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-365
               

               
Cow position:
               
chr24:36555136-36554829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr24:4228312-4228631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr24:5929800-5930116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr24:15802836-15803161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr24:27675139-27675458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 191
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr24:28494766-28495085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 253
               

               
Conread position:
               
49-368
               

               
Cow position:
               
chr24:634682-634985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-370
               

               
Cow position:
               
chr24:20862269-20861949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
49-373
               

               
Cow position:
               
chr24:27052800-27052481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr24:20024299-20024651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 249
               

               
Conread position:
               
49-400
               

               
Cow position:
               
chr24:38347371-38347714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr24:11152372-11152722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 232
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr24:20368584-20368939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 236
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr24:36308599-36308951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-409
               

               
Cow position:
               
chr24:2391883-2392235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 215
               

               
Conread position:
               
49-409
               

               
Cow position:
               
chr24:27341332-27340970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 259
               

               
Conread position:
               
49-409
               

               
Cow position:
               
chr24:44808937-44809299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 146
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr24:29180593-29180937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-419
               

               
Cow position:
               
chr24:3152883-3152519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
49-426
               

               
Cow position:
               
chr24:12348756-12349127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
49-432
               

               
Cow position:
               
chr24:43506821-43506440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 129
               

               
Conread position:
               
49-437
               

               
Cow position:
               
chr24:12146568-12146192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
49-437
               

               
Cow position:
               
chr24:23616387-23616773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-440
               

               
Cow position:
               
chr24:201941-201557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
49-446
               

               
Cow position:
               
chr24:29679620-29679227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 205
               

               
Conread position:
               
49-448
               

               
Cow position:
               
chr24:32370219-32369827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 115
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr24:18970796-18970416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 19
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr24:20225429-20225828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 235
               

               
Conread position:
               
49-454
               

               
Cow position:
               
chr24:28319514-28319116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 122
               

               
Conread position:
               
49-454
               

               
Cow position:
               
chr24:33230358-33230768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
49-492
               

               
Cow position:
               
chr24:5754533-5754967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
49-500
               

               
Cow position:
               
chr24:29781854-29782311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-501
               

               
Cow position:
               
chr24:16870094-16869634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 134
               

               
Conread position:
               
49-516
               

               
Cow position:
               
chr24:18741879-18741402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
49-516
               

               
Cow position:
               
chr24:23556637-23556174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
49-519
               

               
Cow position:
               
chr24:36174091-36173613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 148
               

               
Conread position:
               
49-524
               

               
Cow position:
               
chr24:19658239-19658705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 249
               

               
Conread position:
               
49-524
               

               
Cow position:
               
chr24:28553854-28553401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr24:15692711-15693196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr24:27844828-27844359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr24:27906120-27906612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 202
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr24:32158575-32158120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
169, 36
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr24:33372250-33372720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
49-528
               

               
Cow position:
               
chr24:18734668-18734205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
49-528
               

               
Cow position:
               
chr24:32609330-32609824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 378
               

               
Conread position:
               
49-532
               

               
Cow position:
               
chr24:42103062-42103540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
49-533
               

               
Cow position:
               
chr24:3493585-3494061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
49-536
               

               
Cow position:
               
chr24:28062633-28063133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 228
               

               
Conread position:
               
49-537
               

               
Cow position:
               
chr24:11886854-11887337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 35
               

               
Conread position:
               
49-537
               

               
Cow position:
               
chr24:18485308-18484806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 145
               

               
Conread position:
               
49-537
               

               
Cow position:
               
chr24:32359126-32358632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
49-537
               

               
Cow position:
               
chr24:44987682-44987190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
49-547
               

               
Cow position:
               
chr24:26929257-26928753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 268
               

               
Conread position:
               
49-549
               

               
Cow position:
               
chr24:25677724-25678201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
49-549
               

               
Cow position:
               
chr24:39483168-39483658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
49-550
               

               
Cow position:
               
chr24:31811879-31812385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 52
               

               
Conread position:
               
49-551
               

               
Cow position:
               
chr24:15861905-15861391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 30
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr24:5141626-5142137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr24:27149099-27149578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 19
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr24:28303658-28303163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr24:30484242-30483748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 15
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr24:34272494-34273016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 180
               

               
Conread position:
               
50-225
               

               
Cow position:
               
chr24:23184343-23184166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
50-229
               

               
Cow position:
               
chr24:36715242-36715422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 171
               

               
Conread position:
               
50-264
               

               
Cow position:
               
chr24:27809872-27810094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
50-264
               

               
Cow position:
               
chr24:37876930-37877141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
50-265
               

               
Cow position:
               
chr24:6091010-6091230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 71
               

               
Conread position:
               
50-265
               

               
Cow position:
               
chr24:39500589-39500370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
50-269
               

               
Cow position:
               
chr24:15733007-15733229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
50-402
               

               
Cow position:
               
chr24:34564821-34565161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
50-423
               

               
Cow position:
               
chr24:17412432-17412789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
139, 45
               

               
Conread position:
               
50-449
               

               
Cow position:
               
chr24:39159851-39159463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
50-462
               

               
Cow position:
               
chr24:31159319-31159717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 114
               

               
Conread position:
               
50-527
               

               
Cow position:
               
chr24:211674-212144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 263
               

               
Conread position:
               
50-527
               

               
Cow position:
               
chr24:28496895-28496409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
50-527
               

               
Cow position:
               
chr24:33098794-33098298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
50-548
               

               
Cow position:
               
chr24:13625982-13626478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
50-552
               

               
Cow position:
               
chr24:32205103-32204592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 137
               

               
Conread position:
               
50-552
               

               
Cow position:
               
chr24:37246525-37246044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 238
               

               
Conread position:
               
51-217
               

               
Cow position:
               
chr24:19444340-19444173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
51-220
               

               
Cow position:
               
chr24:38593340-38593512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
51-227
               

               
Cow position:
               
chr24:28233084-28233260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 51
               

               
Conread position:
               
51-345
               

               
Cow position:
               
chr24:6154518-6154797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
51-358
               

               
Cow position:
               
chr24:13872479-13872787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 240
               

               
Conread position:
               
51-362
               

               
Cow position:
               
chr24:42581137-42580839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 64
               

               
Conread position:
               
51-411
               

               
Cow position:
               
chr24:39440864-39440517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
51-524
               

               
Cow position:
               
chr24:29596117-29595629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
51-527
               

               
Cow position:
               
chr24:17311515-17311055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 138
               

               
Conread position:
               
51-527
               

               
Cow position:
               
chr24:27874296-27874747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 135
               

               
Conread position:
               
51-527
               

               
Cow position:
               
chr24:39850183-39849718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
51-528
               

               
Cow position:
               
chr24:19466239-19465734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
51-549
               

               
Cow position:
               
chr24:9070741-9070249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
52-220
               

               
Cow position:
               
chr24:34274456-34274624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 104
               

               
Conread position:
               
52-242
               

               
Cow position:
               
chr24:19804381-19804576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
52-249
               

               
Cow position:
               
chr24:40056023-40055829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
52-264
               

               
Cow position:
               
chr24:11006909-11007127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
25, 128
               

               
Conread position:
               
52-264
               

               
Cow position:
               
chr24:34532818-34533035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
52-264
               

               
Cow position:
               
chr24:39492991-39493202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 124
               

               
Conread position:
               
52-372
               

               
Cow position:
               
chr24:6921799-6922121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 232
               

               
Conread position:
               
52-447
               

               
Cow position:
               
chr24:44054447-44054081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
52-460
               

               
Cow position:
               
chr24:31323979-31324384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
52-512
               

               
Cow position:
               
chr24:44041315-44040852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 104
               

               
Conread position:
               
53-222
               

               
Cow position:
               
chr24:15288553-15288724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
53-239
               

               
Cow position:
               
chr24:11874929-11874749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
164, 19
               

               
Conread position:
               
53-252
               

               
Cow position:
               
chr24:41963329-41963523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
53-264
               

               
Cow position:
               
chr24:35836542-35836330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 112
               

               
Conread position:
               
53-402
               

               
Cow position:
               
chr24:32693398-32693761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
53-437
               

               
Cow position:
               
chr24:7001373-7000987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 205
               

               
Conread position:
               
53-461
               

               
Cow position:
               
chr24:42345312-42344896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 234
               

               
Conread position:
               
53-532
               

               
Cow position:
               
chr24:2402678-2402198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
53-546
               

               
Cow position:
               
chr24:40300851-40301351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
54-217
               

               
Cow position:
               
chr24:5106494-5106658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
54-264
               

               
Cow position:
               
chr24:39238493-39238709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 104
               

               
Conread position:
               
54-364
               

               
Cow position:
               
chr24:18610513-18610822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 223
               

               
Conread position:
               
55-334
               

               
Cow position:
               
chr24:6914066-6913789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
23, 93
               

               
Conread position:
               
55-463
               

               
Cow position:
               
chr24:29063948-29063556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 117
               

               
Conread position:
               
55-515
               

               
Cow position:
               
chr24:5849712-5849233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
18, 190
               

               
Conread position:
               
55-524
               

               
Cow position:
               
chr24:3165519-3165990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 120
               

               
Conread position:
               
56-193
               

               
Cow position:
               
chr24:31309120-31309259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
56-222
               

               
Cow position:
               
chr24:13084187-13084019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
56-227
               

               
Cow position:
               
chr24:14550204-14550376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
23, 138
               

               
Conread position:
               
56-259
               

               
Cow position:
               
chr24:6956879-6957080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
56-265
               

               
Cow position:
               
chr24:20923298-20923494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
168, 40
               

               
Conread position:
               
56-265
               

               
Cow position:
               
chr24:38374984-38375193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
56-299
               

               
Cow position:
               
chr24:5435345-5435102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
56-302
               

               
Cow position:
               
chr24:8770283-8770529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
56-351
               

               
Cow position:
               
chr24:29027748-29028032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
56-367
               

               
Cow position:
               
chr24:3214450-3214762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 76
               

               
Conread position:
               
56-369
               

               
Cow position:
               
chr24:10308973-10309262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 108
               

               
Conread position:
               
56-455
               

               
Cow position:
               
chr24:33153481-33153872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
56-468
               

               
Cow position:
               
chr24:814566-814162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
56-487
               

               
Cow position:
               
chr24:27290576-27290997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
56-512
               

               
Cow position:
               
chr24:20874375-20874839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 255
               

               
Conread position:
               
56-525
               

               
Cow position:
               
chr24:25320688-25321157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 240
               

               
Conread position:
               
56-525
               

               
Cow position:
               
chr24:28600155-28599702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
56-526
               

               
Cow position:
               
chr24:11045851-11045385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
393, 18
               

               
Conread position:
               
56-527
               

               
Cow position:
               
chr24:15246937-15246484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 120
               

               
Conread position:
               
56-527
               

               
Cow position:
               
chr24:18732422-18731934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 88
               

               
Conread position:
               
56-545
               

               
Cow position:
               
chr24:42862349-42862816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
56-549
               

               
Cow position:
               
chr24:6071294-6071789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
56-550
               

               
Cow position:
               
chr24:17407092-17407589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
56-551
               

               
Cow position:
               
chr24:38814670-38815170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 118
               

               
Conread position:
               
56-552
               

               
Cow position:
               
chr24:27267334-27267809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 105
               

               
Conread position:
               
57-234
               

               
Cow position:
               
chr24:10545820-10546001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 109
               

               
Conread position:
               
57-349
               

               
Cow position:
               
chr24:27720052-27719771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
57-550
               

               
Cow position:
               
chr24:5652276-5651808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
59-342
               

               
Cow position:
               
chr24:21093760-21093482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 90
               

               
Conread position:
               
59-552
               

               
Cow position:
               
chr24:41985679-41986174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 146
               

               
Conread position:
               
60-256
               

               
Cow position:
               
chr24:39123571-39123764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 67
               

               
Conread position:
               
60-332
               

               
Cow position:
               
chr24:35405868-35405592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 223
               

               
Conread position:
               
60-552
               

               
Cow position:
               
chr24:43028622-43028131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 169
               

               
Conread position:
               
61-456
               

               
Cow position:
               
chr24:24250440-24250818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
62-456
               

               
Cow position:
               
chr24:39905753-39905351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
132, 22
               

               
Conread position:
               
63-220
               

               
Cow position:
               
chr24:11417474-11417633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
63-533
               

               
Cow position:
               
chr24:17104861-17104392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 111
               

               
Conread position:
               
64-257
               

               
Cow position:
               
chr24:45216402-45216213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 38
               

               
Conread position:
               
64-423
               

               
Cow position:
               
chr24:43432509-43432853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
64-522
               

               
Cow position:
               
chr24:43635142-43635583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
64-536
               

               
Cow position:
               
chr24:29388959-29389398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
120, 27
               

               
Conread position:
               
65-222
               

               
Cow position:
               
chr24:33526611-33526453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
91, 152
               

               
Conread position:
               
65-229
               

               
Cow position:
               
chr24:15639190-15639025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
141, 40
               

               
Conread position:
               
65-234
               

               
Cow position:
               
chr24:25245759-25245927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
153, 59
               

               
Conread position:
               
65-262
               

               
Cow position:
               
chr24:2730860-2730664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 109
               

               
Conread position:
               
65-263
               

               
Cow position:
               
chr24:8591048-8591243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
142, 37
               

               
Conread position:
               
65-265
               

               
Cow position:
               
chr24:16909349-16909552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
36, 68
               

               
Conread position:
               
65-265
               

               
Cow position:
               
chr24:41333166-41332971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
65-310
               

               
Cow position:
               
chr24:18075857-18076100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
13, 126
               

               
Conread position:
               
65-324
               

               
Cow position:
               
chr24:30900517-30900263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
88, 20
               

               
Conread position:
               
65-335
               

               
Cow position:
               
chr24:22433338-22433613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 245
               

               
Conread position:
               
65-336
               

               
Cow position:
               
chr24:21860511-21860246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
65-362
               

               
Cow position:
               
chr24:5431372-5431669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 211
               

               
Conread position:
               
65-369
               

               
Cow position:
               
chr24:28028995-28028699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
179, 49
               

               
Conread position:
               
65-385
               

               
Cow position:
               
chr24:21768350-21768669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 235
               

               
Conread position:
               
65-452
               

               
Cow position:
               
chr24:40206786-40207167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
252, 109
               

               
Conread position:
               
65-453
               

               
Cow position:
               
chr24:43200564-43200183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 107
               

               
Conread position:
               
65-462
               

               
Cow position:
               
chr24:18331446-18331822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 100
               

               
Conread position:
               
65-523
               

               
Cow position:
               
chr24:28721598-28722047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 56
               

               
Conread position:
               
65-526
               

               
Cow position:
               
chr24:33944117-33944579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 86
               

               
Conread position:
               
65-527
               

               
Cow position:
               
chr24:34369298-34368852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
65-532
               

               
Cow position:
               
chr24:7079499-7079943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
65-532
               

               
Cow position:
               
chr24:34761606-34762075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
153, 24
               

               
Conread position:
               
66-218
               

               
Cow position:
               
chr24:28143972-28143828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
66-220
               

               
Cow position:
               
chr24:6677213-6677363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
66-228
               

               
Cow position:
               
chr24:8810821-8810982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
66-229
               

               
Cow position:
               
chr24:7023105-7023268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
66-237
               

               
Cow position:
               
chr24:39607843-39607671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
159, 108
               

               
Conread position:
               
66-266
               

               
Cow position:
               
chr24:39742534-39742737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
66-349
               

               
Cow position:
               
chr24:24137140-24136872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
152, 72
               

               
Conread position:
               
66-350
               

               
Cow position:
               
chr24:39258875-39259151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
68, 108
               

               
Conread position:
               
66-358
               

               
Cow position:
               
chr24:16267503-16267770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
158, 91
               

               
Conread position:
               
66-440
               

               
Cow position:
               
chr24:8886625-8886990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
12, 94
               

               
Conread position:
               
66-452
               

               
Cow position:
               
chr24:35150241-35150610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
66-514
               

               
Cow position:
               
chr24:31816294-31816736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 140
               

               
Conread position:
               
66-523
               

               
Cow position:
               
chr24:17860542-17860092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
66-526
               

               
Cow position:
               
chr24:6508054-6507616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
66-527
               

               
Cow position:
               
chr24:1438556-1438117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
66-527
               

               
Cow position:
               
chr24:27633122-27633580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
7, 109
               

               
Conread position:
               
66-527
               

               
Cow position:
               
chr24:32759059-32758607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
54, 231
               

               
Conread position:
               
66-527
               

               
Cow position:
               
chr24:34742460-34742923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
66-549
               

               
Cow position:
               
chr24:23695184-23694715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 22
               

               
Conread position:
               
66-551
               

               
Cow position:
               
chr24:6102544-6103026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
66-551
               

               
Cow position:
               
chr24:15508825-15508369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
67-302
               

               
Cow position:
               
chr24:7030441-7030209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
67-347
               

               
Cow position:
               
chr24:27941296-27941026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 71
               

               
Conread position:
               
67-448
               

               
Cow position:
               
chr24:45004665-45005037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 127
               

               
Conread position:
               
68-215
               

               
Cow position:
               
chr24:18793179-18793326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
56, 129
               

               
Conread position:
               
68-234
               

               
Cow position:
               
chr24:43176211-43176374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
68-259
               

               
Cow position:
               
chr24:28279357-28279545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
150, 34
               

               
Conread position:
               
68-264
               

               
Cow position:
               
chr24:18324329-18324529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
68-265
               

               
Cow position:
               
chr24:35529637-35529828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
150, 8
               

               
Conread position:
               
68-537
               

               
Cow position:
               
chr24:15057114-15057566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
69-453
               

               
Cow position:
               
chr24:11118994-11119370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
69-520
               

               
Cow position:
               
chr24:35073806-35074249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 103
               

               
Conread position:
               
69-545
               

               
Cow position:
               
chr24:27726292-27725816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 81
               

               
Conread position:
               
69-548
               

               
Cow position:
               
chr24:28699769-28700237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
70-453
               

               
Cow position:
               
chr24:40129840-40130222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 32
               

               
Conread position:
               
70-524
               

               
Cow position:
               
chr24:37650385-37650846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 93
               

               
Conread position:
               
70-526
               

               
Cow position:
               
chr24:24311216-24311656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
148, 34
               

               
Conread position:
               
71-424
               

               
Cow position:
               
chr24:32823066-32822707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
158, 49
               

               
Conread position:
               
71-527
               

               
Cow position:
               
chr24:36404431-36403982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 39
               

               
Conread position:
               
72-250
               

               
Cow position:
               
chr24:25424780-25424956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
146, 114
               

               
Conread position:
               
72-368
               

               
Cow position:
               
chr24:39955329-39955042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
174, 159
               

               
Conread position:
               
73-548
               

               
Cow position:
               
chr24:27748372-27748816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
74-433
               

               
Cow position:
               
chr24:18243746-18243394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
144, 70
               

               
Conread position:
               
74-525
               

               
Cow position:
               
chr24:7913717-7914181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 211
               

               
Conread position:
               
75-265
               

               
Cow position:
               
chr24:40184342-40184534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
75-411
               

               
Cow position:
               
chr24:27096405-27096740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
143, 86
               

               
Conread position:
               
76-526
               

               
Cow position:
               
chr24:40592442-40592886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
142, 30
               

               
Conread position:
               
76-540
               

               
Cow position:
               
chr24:41980942-41980472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 27
               

               
Conread position:
               
77-217
               

               
Cow position:
               
chr24:20594346-20594206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
77-220
               

               
Cow position:
               
chr24:28060704-28060566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
77-225
               

               
Cow position:
               
chr24:22821735-22821884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
77-229
               

               
Cow position:
               
chr24:10554419-10554567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
77-238
               

               
Cow position:
               
chr24:43832082-43832237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
77-241
               

               
Cow position:
               
chr24:40974730-40974884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
147, 76
               

               
Conread position:
               
77-259
               

               
Cow position:
               
chr24:6900546-6900727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
141, 94
               

               
Conread position:
               
77-350
               

               
Cow position:
               
chr24:17567112-17567375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
141, 77
               

               
Conread position:
               
77-370
               

               
Cow position:
               
chr24:35795018-35794725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 203
               

               
Conread position:
               
77-400
               

               
Cow position:
               
chr24:23685339-23685026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
200, 94
               

               
Conread position:
               
77-412
               

               
Cow position:
               
chr24:39681577-39681903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
144, 94
               

               
Conread position:
               
77-440
               

               
Cow position:
               
chr24:3430457-3430813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 78
               

               
Conread position:
               
77-469
               

               
Cow position:
               
chr24:40849886-40850262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
149, 28
               

               
Conread position:
               
77-489
               

               
Cow position:
               
chr24:25885436-25885033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 78
               

               
Conread position:
               
77-527
               

               
Cow position:
               
chr24:24491292-24490852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
77-527
               

               
Cow position:
               
chr24:30229188-30229648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 113
               

               
Conread position:
               
77-527
               

               
Cow position:
               
chr24:35675265-35675705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 123
               

               
Conread position:
               
77-532
               

               
Cow position:
               
chr24:42943400-42942959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
77-552
               

               
Cow position:
               
chr24:39350486-39350045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
78-212
               

               
Cow position:
               
chr24:28289706-28289576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
78-221
               

               
Cow position:
               
chr24:35429950-35429813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
78-256
               

               
Cow position:
               
chr24:13626970-13626783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
78-348
               

               
Cow position:
               
chr24:27967803-27968072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
146, 96
               

               
Conread position:
               
78-412
               

               
Cow position:
               
chr24:30860360-30860688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
148, 26
               

               
Conread position:
               
78-516
               

               
Cow position:
               
chr24:17294464-17294032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 95
               

               
Conread position:
               
78-523
               

               
Cow position:
               
chr24:25111925-25112366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
101, 158
               

               
Conread position:
               
78-523
               

               
Cow position:
               
chr24:38002019-38001567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
78-524
               

               
Cow position:
               
chr24:30545133-30544719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 125
               

               
Conread position:
               
78-527
               

               
Cow position:
               
chr24:31378477-31378903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
24, 152
               

               
Conread position:
               
78-536
               

               
Cow position:
               
chr24:30314313-30313845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 205
               

               
Conread position:
               
78-551
               

               
Cow position:
               
chr24:1269527-1269978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 83
               

               
Conread position:
               
79-236
               

               
Cow position:
               
chr24:33579191-33579347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
155, 137
               

               
Conread position:
               
79-252
               

               
Cow position:
               
chr24:250845-250675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
79-440
               

               
Cow position:
               
chr24:2108528-2108165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 96
               

               
Conread position:
               
79-461
               

               
Cow position:
               
chr24:19769222-19769596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 80
               

               
Conread position:
               
80-436
               

               
Cow position:
               
chr24:25229332-25228988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
142, 21
               

               
Conread position:
               
80-513
               

               
Cow position:
               
chr24:41755591-41756010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 22
               

               
Conread position:
               
80-527
               

               
Cow position:
               
chr24:25193989-25194440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 111
               

               
Conread position:
               
80-550
               

               
Cow position:
               
chr24:43370973-43371440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 94
               

               
Conread position:
               
81-259
               

               
Cow position:
               
chr24:42380976-42380809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
81-264
               

               
Cow position:
               
chr24:591636-591821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
58, 91
               

               
Conread position:
               
81-423
               

               
Cow position:
               
chr24:19495-19131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
102, 209
               

               
Conread position:
               
81-462
               

               
Cow position:
               
chr24:18390562-18390199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 25
               

               
Conread position:
               
82-400
               

               
Cow position:
               
chr24:23442854-23442540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
84-225
               

               
Cow position:
               
chr24:27259250-27259114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
135, 18
               

               
Conread position:
               
84-260
               

               
Cow position:
               
chr24:16476136-16476305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
84-265
               

               
Cow position:
               
chr24:12992784-12992964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
138, 157
               

               
Conread position:
               
84-265
               

               
Cow position:
               
chr24:21522828-21523012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
85-391
               

               
Cow position:
               
chr24:11734452-11734754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
142, 183
               

               
Conread position:
               
85-527
               

               
Cow position:
               
chr24:16994624-16995052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
87-264
               

               
Cow position:
               
chr24:25950935-25950759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
108, 91
               

               
Conread position:
               
88-217
               

               
Cow position:
               
chr24:22317677-22317806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
88-237
               

               
Cow position:
               
chr24:11263137-11263293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 5
               

               
Conread position:
               
88-334
               

               
Cow position:
               
chr24:5151968-5152210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
88-480
               

               
Cow position:
               
chr24:17955715-17955325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 210
               

               
Conread position:
               
89-441
               

               
Cow position:
               
chr24:16556901-16556563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
89-521
               

               
Cow position:
               
chr24:28349318-28349732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
89-522
               

               
Cow position:
               
chr24:32124908-32124485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 103
               

               
Conread position:
               
89-532
               

               
Cow position:
               
chr24:27608364-27607932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 74
               

               
Conread position:
               
92-524
               

               
Cow position:
               
chr24:18374511-18374935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 176
               

               
Conread position:
               
92-524
               

               
Cow position:
               
chr24:39226735-39227144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 163
               

               
Conread position:
               
92-552
               

               
Cow position:
               
chr24:2970870-2970427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
61, 82
               

               
Conread position:
               
93-264
               

               
Cow position:
               
chr24:31388271-31388439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
94-527
               

               
Cow position:
               
chr24:42825759-42825341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 201
               

               
Conread position:
               
95-228
               

               
Cow position:
               
chr24:35467439-35467310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
122, 91
               

               
Conread position:
               
95-268
               

               
Cow position:
               
chr24:19736634-19736453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
75, 174
               

               
Conread position:
               
95-444
               

               
Cow position:
               
chr24:33724111-33723761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
87, 186
               

               
Conread position:
               
96-234
               

               
Cow position:
               
chr24:42816737-42816872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 43
               

               
Conread position:
               
96-265
               

               
Cow position:
               
chr24:40408206-40408036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
128, 82
               

               
Conread position:
               
96-532
               

               
Cow position:
               
chr24:27039779-27040228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 178
               

               
Conread position:
               
99-443
               

               
Cow position:
               
chr24:43927577-43927250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 10
               

               
Conread position:
               
99-527
               

               
Cow position:
               
chr24:44869758-44870169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 94
               

               
Conread position:
               
100-232
               

               
Cow position:
               
chr24:30427886-30428016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
100-456
               

               
Cow position:
               
chr24:41068013-41068356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
64, 73
               

               
Conread position:
               
101-258
               

               
Cow position:
               
chr24:5945066-5944910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
151, 138
               

               
Conread position:
               
102-263
               

               
Cow position:
               
chr24:30776921-30776759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
122, 76
               

               
Conread position:
               
102-336
               

               
Cow position:
               
chr24:27207448-27207219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
123, 69
               

               
Conread position:
               
102-357
               

               
Cow position:
               
chr24:17363902-17363651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 93
               

               
Conread position:
               
102-433
               

               
Cow position:
               
chr24:23824670-23824349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
173, 92
               

               
Conread position:
               
102-469
               

               
Cow position:
               
chr24:26732194-26732560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
70, 44
               

               
Conread position:
               
103-471
               

               
Cow position:
               
chr24:18771435-18771075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
104-547
               

               
Cow position:
               
chr24:17943416-17942983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
177, 69
               

               
Conread position:
               
105-394
               

               
Cow position:
               
chr24:6487670-6487950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 46
               

               
Conread position:
               
105-453
               

               
Cow position:
               
chr24:27824214-27824555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 55
               

               
Conread position:
               
106-499
               

               
Cow position:
               
chr24:20942920-20943306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 35
               

               
Conread position:
               
106-516
               

               
Cow position:
               
chr24:6061648-6061238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
106-527
               

               
Cow position:
               
chr24:18474997-18474555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
106-533
               

               
Cow position:
               
chr24:24755200-24755608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
107-441
               

               
Cow position:
               
chr24:2096137-2095801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 66
               

               
Conread position:
               
108-547
               

               
Cow position:
               
chr24:10498963-10499411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 137
               

               
Conread position:
               
110-534
               

               
Cow position:
               
chr24:19179690-19179255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 30
               

               
Conread position:
               
113-535
               

               
Cow position:
               
chr24:37299078-37298659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
117-462
               

               
Cow position:
               
chr24:33222178-33221830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
117-537
               

               
Cow position:
               
chr24:17285236-17284798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 149
               

               
Conread position:
               
119-336
               

               
Cow position:
               
chr24:18695385-18695595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
105, 42
               

               
Conread position:
               
119-552
               

               
Cow position:
               
chr24:18343812-18344265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
108, 59
               

               
Conread position:
               
121-264
               

               
Cow position:
               
chr24:3627055-3627201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
121-524
               

               
Cow position:
               
chr24:20587931-20588345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
75, 155
               

               
Conread position:
               
124-411
               

               
Cow position:
               
chr24:20250135-20249845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
94, 172
               

               
Conread position:
               
126-447
               

               
Cow position:
               
chr24:28327312-28326994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
103, 46
               

               
Conread position:
               
126-527
               

               
Cow position:
               
chr24:34396402-34396016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 10
               

               
Conread position:
               
126-543
               

               
Cow position:
               
chr24:41001027-41001456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
91, 152
               

               
Conread position:
               
128-462
               

               
Cow position:
               
chr24:24457474-24457149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 36
               

               
Conread position:
               
129-383
               

               
Cow position:
               
chr24:21918444-21918205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
129-385
               

               
Cow position:
               
chr24:10841442-10841182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 28
               

               
Conread position:
               
129-527
               

               
Cow position:
               
chr24:22689812-22689399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 180
               

               
Conread position:
               
129-550
               

               
Cow position:
               
chr24:10518329-10518752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 173
               

               
Conread position:
               
130-262
               

               
Cow position:
               
chr24:18328921-18328791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
130-515
               

               
Cow position:
               
chr24:22224952-22225353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
89, 112
               

               
Conread position:
               
130-516
               

               
Cow position:
               
chr24:31036132-31036501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
132-419
               

               
Cow position:
               
chr24:3663941-3664235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 266
               

               
Conread position:
               
132-495
               

               
Cow position:
               
chr24:31359099-31359460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 113
               

               
Conread position:
               
133-523
               

               
Cow position:
               
chr24:29540133-29539760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 98
               

               
Conread position:
               
134-537
               

               
Cow position:
               
chr24:16509751-16510154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 31
               

               
Conread position:
               
136-395
               

               
Cow position:
               
chr24:40673656-40673386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
88, 160
               

               
Conread position:
               
137-462
               

               
Cow position:
               
chr24:33465819-33465520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
138-531
               

               
Cow position:
               
chr24:22079239-22079642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 157
               

               
Conread position:
               
138-532
               

               
Cow position:
               
chr24:39833733-39833359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
88, 143
               

               
Conread position:
               
140-450
               

               
Cow position:
               
chr24:15373194-15373495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
140-503
               

               
Cow position:
               
chr24:16645537-16645168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
140-532
               

               
Cow position:
               
chr24:5633252-5632849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
79, 162
               

               
Conread position:
               
142-528
               

               
Cow position:
               
chr24:10125648-10126054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
78, 148
               

               
Conread position:
               
143-461
               

               
Cow position:
               
chr24:34008793-34008472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
149-462
               

               
Cow position:
               
chr24:15347383-15347692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
6, 48
               

               
Conread position:
               
150-456
               

               
Cow position:
               
chr24:28253501-28253815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
150-501
               

               
Cow position:
               
chr24:28990360-28990710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
151-527
               

               
Cow position:
               
chr24:20801548-20801171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
67, 22
               

               
Conread position:
               
151-550
               

               
Cow position:
               
chr24:39143400-39143807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
74, 151
               

               
Conread position:
               
154-550
               

               
Cow position:
               
chr24:6132078-6131690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
163-468
               

               
Cow position:
               
chr24:17434415-17434718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
32, 126
               

               
Conread position:
               
163-527
               

               
Cow position:
               
chr24:30897734-30897388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 141
               

               
Conread position:
               
163-551
               

               
Cow position:
               
chr24:6700565-6700160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 123
               

               
Conread position:
               
164-469
               

               
Cow position:
               
chr24:14171889-14171581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
54, 204
               

               
Conread position:
               
164-547
               

               
Cow position:
               
chr24:352800-352407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
166-454
               

               
Cow position:
               
chr24:10299890-10300170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
172-550
               

               
Cow position:
               
chr24:19800659-19801032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
174-461
               

               
Cow position:
               
chr24:26554786-26554496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
174-524
               

               
Cow position:
               
chr24:17832999-17832658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
51, 123
               

               
Conread position:
               
174-527
               

               
Cow position:
               
chr24:41423424-41423769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
50, 109
               

               
Conread position:
               
174-544
               

               
Cow position:
               
chr24:27220276-27219899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 137
               

               
Conread position:
               
174-552
               

               
Cow position:
               
chr24:21606846-21606480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
286, 48
               

               
Conread position:
               
175-469
               

               
Cow position:
               
chr24:32070782-32071072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
175-514
               

               
Cow position:
               
chr24:7476537-7476189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 127
               

               
Conread position:
               
177-450
               

               
Cow position:
               
chr24:16895618-16895348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 91
               

               
Conread position:
               
177-517
               

               
Cow position:
               
chr24:42877052-42876736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
177-524
               

               
Cow position:
               
chr24:37945816-37945475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
178-527
               

               
Cow position:
               
chr24:18999866-19000217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
179-393
               

               
Cow position:
               
chr24:17492135-17492331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
182-532
               

               
Cow position:
               
chr24:18357230-18356877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
182-549
               

               
Cow position:
               
chr24:12200590-12200215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 239
               

               
Conread position:
               
183-455
               

               
Cow position:
               
chr24:6912527-6912269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
183-551
               

               
Cow position:
               
chr24:37037723-37038087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 95
               

               
Conread position:
               
184-551
               

               
Cow position:
               
chr24:31258513-31258162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 125
               

               
Conread position:
               
185-444
               

               
Cow position:
               
chr24:19736502-19736251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
187-455
               

               
Cow position:
               
chr24:23187089-23186821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
187-456
               

               
Cow position:
               
chr24:24061974-24061709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
190-520
               

               
Cow position:
               
chr24:27630234-27630566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
203-456
               

               
Cow position:
               
chr24:8006155-8006402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
203-537
               

               
Cow position:
               
chr24:11112744-11112396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
204-441
               

               
Cow position:
               
chr24:43967656-43967423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
204-462
               

               
Cow position:
               
chr24:18314104-18313831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
5, 76
               

               
Conread position:
               
204-474
               

               
Cow position:
               
chr24:41512104-41511836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
182, 62
               

               
Conread position:
               
204-537
               

               
Cow position:
               
chr24:4724818-4725143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
206-516
               

               
Cow position:
               
chr24:38841557-38841270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
206-520
               

               
Cow position:
               
chr24:17752266-17751941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
208-524
               

               
Cow position:
               
chr24:37395359-37395036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
213-550
               

               
Cow position:
               
chr24:389956-390293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
216-452
               

               
Cow position:
               
chr24:24662272-24662039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
217-469
               

               
Cow position:
               
chr24:39791399-39791649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
220-524
               

               
Cow position:
               
chr24:27713541-27713239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
220-527
               

               
Cow position:
               
chr24:29606181-29605859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
225-523
               

               
Cow position:
               
chr24:28233917-28234211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 46
               

               
Conread position:
               
227-455
               

               
Cow position:
               
chr24:14457853-14457629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
15, 53
               

               
Conread position:
               
227-535
               

               
Cow position:
               
chr24:42004046-42004351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
221, 39
               

               
Conread position:
               
227-536
               

               
Cow position:
               
chr24:13352914-13353207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
227-550
               

               
Cow position:
               
chr24:2359306-2358991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
140, 68
               

               
Conread position:
               
227-552
               

               
Cow position:
               
chr24:23863764-23863429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 196
               

               
Conread position:
               
232-453
               

               
Cow position:
               
chr24:32095195-32095402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
212, 45
               

               
Conread position:
               
232-517
               

               
Cow position:
               
chr24:29561699-29561415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 45
               

               
Conread position:
               
232-552
               

               
Cow position:
               
chr24:39523572-39523251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 61
               

               
Conread position:
               
233-524
               

               
Cow position:
               
chr24:15288702-15288998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
236-461
               

               
Cow position:
               
chr24:18614878-18615101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 66
               

               
Conread position:
               
244-522
               

               
Cow position:
               
chr24:43832410-43832691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 92
               

               
Conread position:
               
244-535
               

               
Cow position:
               
chr24:37975094-37974801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 33
               

               
Conread position:
               
252-524
               

               
Cow position:
               
chr24:22999910-23000172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
253-527
               

               
Cow position:
               
chr24:37823426-37823698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
253-539
               

               
Cow position:
               
chr24:30308661-30308383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 160
               

               
Conread position:
               
280-443
               

               
Cow position:
               
chr24:40975350-40975515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
280-454
               

               
Cow position:
               
chr24:28042895-28043068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
280-463
               

               
Cow position:
               
chr24:116632-116452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
149, 12
               

               
Conread position:
               
280-527
               

               
Cow position:
               
chr24:27349257-27349002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
280-532
               

               
Cow position:
               
chr24:20807458-20807703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
280-532
               

               
Cow position:
               
chr24:27284743-27285003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 22
               

               
Conread position:
               
280-535
               

               
Cow position:
               
chr24:175574-175326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
280-537
               

               
Cow position:
               
chr24:18442638-18442388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
280-540
               

               
Cow position:
               
chr24:230199-230467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
280-552
               

               
Cow position:
               
chr24:13948044-13948321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 22
               

               
Conread position:
               
281-423
               

               
Cow position:
               
chr24:44145503-44145641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
282-527
               

               
Cow position:
               
chr24:20364487-20364242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 33
               

               
Conread position:
               
282-549
               

               
Cow position:
               
chr24:43598948-43598687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
284-546
               

               
Cow position:
               
chr24:14550718-14550983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
289-544
               

               
Cow position:
               
chr24:22156075-22156337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
289-548
               

               
Cow position:
               
chr24:39911104-39910832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
290-453
               

               
Cow position:
               
chr24:34496052-34496217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 22
               

               
Conread position:
               
291-549
               

               
Cow position:
               
chr24:34896767-34896508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
162, 43
               

               
Conread position:
               
291-551
               

               
Cow position:
               
chr24:18137379-18137106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 138
               

               
Conread position:
               
295-449
               

               
Cow position:
               
chr24:11007395-11007545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
297-524
               

               
Cow position:
               
chr24:2992943-2992709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
298-530
               

               
Cow position:
               
chr24:27740135-27740360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
298-537
               

               
Cow position:
               
chr24:35365766-35365525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
152, 39
               

               
Conread position:
               
298-551
               

               
Cow position:
               
chr24:8676760-8677029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
301-492
               

               
Cow position:
               
chr24:33311401-33311219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 50
               

               
Conread position:
               
301-527
               

               
Cow position:
               
chr24:23667177-23666951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
142, 60
               

               
Conread position:
               
302-516
               

               
Cow position:
               
chr24:28344328-28344543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
104, 7
               

               
Conread position:
               
302-551
               

               
Cow position:
               
chr24:18750648-18750911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
303-476
               

               
Cow position:
               
chr24:7046806-7046635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
160, 65
               

               
Conread position:
               
303-527
               

               
Cow position:
               
chr24:18755694-18755934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
303-527
               

               
Cow position:
               
chr24:41405832-41406068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
304-456
               

               
Cow position:
               
chr24:20969719-20969569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
304-525
               

               
Cow position:
               
chr24:6723711-6723925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
118, 142
               

               
Conread position:
               
304-526
               

               
Cow position:
               
chr24:5360661-5360884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
305-514
               

               
Cow position:
               
chr24:41916198-41916418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
305-526
               

               
Cow position:
               
chr24:33244341-33244559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 28
               

               
Conread position:
               
305-527
               

               
Cow position:
               
chr24:10031528-10031748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 141
               

               
Conread position:
               
305-527
               

               
Cow position:
               
chr24:38478449-38478220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
25, 117
               

               
Conread position:
               
305-551
               

               
Cow position:
               
chr24:2379897-2380152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
137, 244
               

               
Conread position:
               
305-552
               

               
Cow position:
               
chr24:37651670-37651918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 227
               

               
Conread position:
               
306-443
               

               
Cow position:
               
chr24:34555982-34556117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
306-496
               

               
Cow position:
               
chr24:27202034-27202228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 56
               

               
Conread position:
               
306-545
               

               
Cow position:
               
chr24:29985040-29984797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
308-504
               

               
Cow position:
               
chr24:16118308-16118506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
141, 178
               

               
Conread position:
               
309-449
               

               
Cow position:
               
chr24:17375587-17375727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
309-456
               

               
Cow position:
               
chr24:28470731-28470584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
309-469
               

               
Cow position:
               
chr24:42981810-42981652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
155, 66
               

               
Conread position:
               
309-490
               

               
Cow position:
               
chr24:16895182-16895010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
309-520
               

               
Cow position:
               
chr24:25122293-25122504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
6, 26
               

               
Conread position:
               
309-544
               

               
Cow position:
               
chr24:38006759-38006523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
309-546
               

               
Cow position:
               
chr24:11034226-11034454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
309-550
               

               
Cow position:
               
chr24:11028736-11028487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
146, 28
               

               
Conread position:
               
309-550
               

               
Cow position:
               
chr24:28600487-28600242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 195
               

               
Conread position:
               
310-527
               

               
Cow position:
               
chr24:22133121-22133340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 186
               

               
Conread position:
               
310-534
               

               
Cow position:
               
chr24:21835010-21834781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 126
               

               
Conread position:
               
311-526
               

               
Cow position:
               
chr24:42175481-42175698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
58, 91
               

               
Conread position:
               
311-527
               

               
Cow position:
               
chr24:39238722-39238935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
178, 132
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr24:28510748-28510982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 94
               

               
Conread position:
               
312-527
               

               
Cow position:
               
chr24:19186893-19187106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
312-552
               

               
Cow position:
               
chr24:26848777-26848544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
185, 12
               

               
Conread position:
               
313-440
               

               
Cow position:
               
chr24:40983084-40983210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
316-552
               

               
Cow position:
               
chr24:12120854-12121096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
320-443
               

               
Cow position:
               
chr24:12077550-12077677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
320-527
               

               
Cow position:
               
chr24:7757732-7757943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
321-455
               

               
Cow position:
               
chr24:28689627-28689763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
321-527
               

               
Cow position:
               
chr24:42226234-42226438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
135, 62
               

               
Conread position:
               
321-527
               

               
Cow position:
               
chr24:42984352-42984569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 110
               

               
Conread position:
               
321-533
               

               
Cow position:
               
chr24:43011389-43011185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
119, 73
               

               
Conread position:
               
321-537
               

               
Cow position:
               
chr24:13888665-13888892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
321-543
               

               
Cow position:
               
chr24:42687809-42688031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 54
               

               
Conread position:
               
322-519
               

               
Cow position:
               
chr24:11036873-11036671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
322-522
               

               
Cow position:
               
chr24:19637545-19637756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
322-550
               

               
Cow position:
               
chr24:17309175-17308947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
139, 63
               

               
Conread position:
               
323-462
               

               
Cow position:
               
chr24:34465543-34465403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
323-532
               

               
Cow position:
               
chr24:34390246-34390451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
135, 38
               

               
Conread position:
               
323-547
               

               
Cow position:
               
chr24:13587029-13586798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 98
               

               
Conread position:
               
323-552
               

               
Cow position:
               
chr24:35310684-35310923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
324-460
               

               
Cow position:
               
chr24:2588809-2588673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
324-532
               

               
Cow position:
               
chr24:32891080-32890867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
138, 187
               

               
Conread position:
               
325-515
               

               
Cow position:
               
chr24:26880718-26880917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
112, 54
               

               
Conread position:
               
326-551
               

               
Cow position:
               
chr24:22567069-22567302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
328-526
               

               
Cow position:
               
chr24:14551436-14551632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
329-443
               

               
Cow position:
               
chr24:12657080-12656966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
329-527
               

               
Cow position:
               
chr24:24227711-24227517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
76, 50
               

               
Conread position:
               
329-527
               

               
Cow position:
               
chr24:41566126-41565926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
127, 23
               

               
Conread position:
               
329-537
               

               
Cow position:
               
chr24:6151761-6151962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
135, 37
               

               
Conread position:
               
329-550
               

               
Cow position:
               
chr24:36286538-36286768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
330-524
               

               
Cow position:
               
chr24:5152493-5152697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
330-527
               

               
Cow position:
               
chr24:11836434-11836227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
330-532
               

               
Cow position:
               
chr24:13610281-13610480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
331-525
               

               
Cow position:
               
chr24:27066201-27066402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
122, 69
               

               
Conread position:
               
333-548
               

               
Cow position:
               
chr24:18810804-18811031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
334-452
               

               
Cow position:
               
chr24:39218579-39218460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
334-548
               

               
Cow position:
               
chr24:3412657-3412873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 101
               

               
Conread position:
               
336-539
               

               
Cow position:
               
chr24:27810134-27810335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
104, 30
               

               
Conread position:
               
337-549
               

               
Cow position:
               
chr24:18302691-18302912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
67, 38
               

               
Conread position:
               
338-528
               

               
Cow position:
               
chr24:6886989-6887181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
339-452
               

               
Cow position:
               
chr24:18968827-18968940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-535
               

               
Cow position:
               
chr24:36775798-36775589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
112, 37
               

               
Conread position:
               
339-549
               

               
Cow position:
               
chr24:35030082-35029877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
340-516
               

               
Cow position:
               
chr24:31479570-31479396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
18, 112
               

               
Conread position:
               
341-537
               

               
Cow position:
               
chr24:161984-162187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
112, 190
               

               
Conread position:
               
341-551
               

               
Cow position:
               
chr24:29677935-29677709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
341-552
               

               
Cow position:
               
chr24:39904023-39903812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
98, 60
               

               
Conread position:
               
342-552
               

               
Cow position:
               
chr24:43499640-43499857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 170
               

               
Conread position:
               
344-516
               

               
Cow position:
               
chr24:37119968-37119792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
345-537
               

               
Cow position:
               
chr24:37252142-37252339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
88, 191
               

               
Conread position:
               
345-544
               

               
Cow position:
               
chr24:358351-358561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
115, 40
               

               
Conread position:
               
346-535
               

               
Cow position:
               
chr24:27940635-27940446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
346-546
               

               
Cow position:
               
chr24:27203446-27203646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
107, 83
               

               
Conread position:
               
347-516
               

               
Cow position:
               
chr24:22888031-22887851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
347-527
               

               
Cow position:
               
chr24:18874834-18874646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
109, 84
               

               
Conread position:
               
347-527
               

               
Cow position:
               
chr24:22855572-22855752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
149, 105
               

               
Conread position:
               
347-552
               

               
Cow position:
               
chr24:44776190-44775977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 187
               

               
Conread position:
               
349-523
               

               
Cow position:
               
chr24:30945594-30945421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
350-515
               

               
Cow position:
               
chr24:17073269-17073103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
354-516
               

               
Cow position:
               
chr24:41244505-41244674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 131
               

               
Conread position:
               
354-527
               

               
Cow position:
               
chr24:25971080-25970910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
354-527
               

               
Cow position:
               
chr24:27279510-27279677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
354-550
               

               
Cow position:
               
chr24:36554704-36554506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 75
               

               
Conread position:
               
354-551
               

               
Cow position:
               
chr24:10219391-10219187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
354-552
               

               
Cow position:
               
chr24:18021278-18021069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
88, 67
               

               
Conread position:
               
354-552
               

               
Cow position:
               
chr24:18405287-18405080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
355-551
               

               
Cow position:
               
chr24:20017433-20017226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
356-527
               

               
Cow position:
               
chr24:2261663-2261844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
357-549
               

               
Cow position:
               
chr24:40811676-40811865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
96, 20
               

               
Conread position:
               
358-525
               

               
Cow position:
               
chr24:15557344-15557172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
361-535
               

               
Cow position:
               
chr24:30325783-30325600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
361-552
               

               
Cow position:
               
chr24:885441-885247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
362-453
               

               
Cow position:
               
chr24:38114851-38114760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
362-546
               

               
Cow position:
               
chr24:26808592-26808781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 174
               

               
Conread position:
               
362-552
               

               
Cow position:
               
chr24:6677648-6677833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
364-455
               

               
Cow position:
               
chr24:42815535-42815626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
365-527
               

               
Cow position:
               
chr24:25947857-25947685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
366-456
               

               
Cow position:
               
chr24:28186508-28186418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
366-523
               

               
Cow position:
               
chr24:24540485-24540322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
366-525
               

               
Cow position:
               
chr24:31383122-31383280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
86, 16
               

               
Conread position:
               
366-525
               

               
Cow position:
               
chr24:42792344-42792524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
366-527
               

               
Cow position:
               
chr24:7275709-7275872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
366-546
               

               
Cow position:
               
chr24:28256053-28255869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
367-527
               

               
Cow position:
               
chr24:42146217-42146379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 54
               

               
Conread position:
               
368-463
               

               
Cow position:
               
chr24:16205312-16205218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
369-545
               

               
Cow position:
               
chr24:41934955-41935122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
168, 58
               

               
Conread position:
               
369-549
               

               
Cow position:
               
chr24:11035498-11035313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
369-551
               

               
Cow position:
               
chr24:22129629-22129445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
91, 136
               

               
Conread position:
               
369-552
               

               
Cow position:
               
chr24:21656415-21656610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
371-545
               

               
Cow position:
               
chr24:26588231-26588415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
373-537
               

               
Cow position:
               
chr24:43349626-43349465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
374-527
               

               
Cow position:
               
chr24:27413097-27412941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 39
               

               
Conread position:
               
374-537
               

               
Cow position:
               
chr24:15414945-15414793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
374-549
               

               
Cow position:
               
chr24:35335105-35335281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
150, 106
               

               
Conread position:
               
377-527
               

               
Cow position:
               
chr24:17938711-17938855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
379-527
               

               
Cow position:
               
chr24:13747-13595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
379-552
               

               
Cow position:
               
chr24:6488227-6488404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
76, 136
               

               
Conread position:
               
380-527
               

               
Cow position:
               
chr24:27719507-27719356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
381-552
               

               
Cow position:
               
chr24:3056952-3057127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 41
               

               
Conread position:
               
383-537
               

               
Cow position:
               
chr24:24136380-24136224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
385-527
               

               
Cow position:
               
chr24:50422-50277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 8
               

               
Conread position:
               
389-537
               

               
Cow position:
               
chr24:41925851-41926000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
391-531
               

               
Cow position:
               
chr24:28330955-28330815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 98
               

               
Conread position:
               
392-525
               

               
Cow position:
               
chr24:2223180-2223049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
399-524
               

               
Cow position:
               
chr24:29524346-29524219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
400-514
               

               
Cow position:
               
chr24:25231278-25231163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
413-527
               

               
Cow position:
               
chr24:29849366-29849247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
58, 42
               

               
Conread position:
               
415-527
               

               
Cow position:
               
chr24:11208627-11208744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 67
               

               
Conread position:
               
428-552
               

               
Cow position:
               
chr24:28566266-28566139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
444-548
               

               
Cow position:
               
chr24:20537692-20537588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
453-548
               

               
Cow position:
               
chr24:28318850-28318754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               
Show alignments to all cow chromosomes.