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Cow genome map

           
Conread name:
           
Ss1.1-rfbs3918b_e17.5
        

               
Conread position:
               
2-533
               

               
Cow position:
               
chr25:8576362-8576876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
8-424
               

               
Cow position:
               
chr25:22297344-22296940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
25-533
               

               
Cow position:
               
chr25:10156286-10156755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
382, 19
               

               
Conread position:
               
27-351
               

               
Cow position:
               
chr25:10205179-10204861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr25:8397456-8397660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
52, 198
               

               
Conread position:
               
34-264
               

               
Cow position:
               
chr25:26757140-26757366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
34-265
               

               
Cow position:
               
chr25:20460822-20461057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
36-265
               

               
Cow position:
               
chr25:18206600-18206372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
38-220
               

               
Cow position:
               
chr25:17659260-17659449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-264
               

               
Cow position:
               
chr25:17702260-17702041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
40-269
               

               
Cow position:
               
chr25:3927745-3927981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
14, 202
               

               
Conread position:
               
43-193
               

               
Cow position:
               
chr25:34156382-34156533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr25:30621320-30621138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 151
               

               
Conread position:
               
43-246
               

               
Cow position:
               
chr25:17659936-17660142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
43-252
               

               
Cow position:
               
chr25:36119909-36120118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
35, 120
               

               
Conread position:
               
43-263
               

               
Cow position:
               
chr25:17354087-17354307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
43-386
               

               
Cow position:
               
chr25:9957326-9956990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
22, 119
               

               
Conread position:
               
43-452
               

               
Cow position:
               
chr25:25051676-25051263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 153
               

               
Conread position:
               
43-521
               

               
Cow position:
               
chr25:10504628-10504145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 123
               

               
Conread position:
               
43-536
               

               
Cow position:
               
chr25:16922084-16921588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
43-550
               

               
Cow position:
               
chr25:24572780-24573276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
44-260
               

               
Cow position:
               
chr25:35608009-35607797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
44-264
               

               
Cow position:
               
chr25:10746611-10746827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
44-264
               

               
Cow position:
               
chr25:31733027-31732804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 157
               

               
Conread position:
               
44-266
               

               
Cow position:
               
chr25:3141015-3141242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
44-377
               

               
Cow position:
               
chr25:5341360-5341692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
44-402
               

               
Cow position:
               
chr25:7762956-7763313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
34, 229
               

               
Conread position:
               
44-416
               

               
Cow position:
               
chr25:3145555-3145922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
44-451
               

               
Cow position:
               
chr25:27821119-27821524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
32, 256
               

               
Conread position:
               
44-455
               

               
Cow position:
               
chr25:26238579-26238980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 130
               

               
Conread position:
               
44-456
               

               
Cow position:
               
chr25:27531559-27531153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 132
               

               
Conread position:
               
44-462
               

               
Cow position:
               
chr25:22530996-22531405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
44-532
               

               
Cow position:
               
chr25:448462-447960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
46, 30
               

               
Conread position:
               
44-546
               

               
Cow position:
               
chr25:27868519-27869023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
44-550
               

               
Cow position:
               
chr25:20348567-20349091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
45-151
               

               
Cow position:
               
chr25:14720194-14720301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
45-201
               

               
Cow position:
               
chr25:7259258-7259415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
32, 136
               

               
Conread position:
               
45-207
               

               
Cow position:
               
chr25:11294503-11294670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
45-210
               

               
Cow position:
               
chr25:14959990-14959823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
45-217
               

               
Cow position:
               
chr25:26353052-26352882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr25:34672883-34672706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 135
               

               
Conread position:
               
45-222
               

               
Cow position:
               
chr25:12840149-12840321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
45-225
               

               
Cow position:
               
chr25:13720830-13720651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
45-252
               

               
Cow position:
               
chr25:41354592-41354389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
174, 15
               

               
Conread position:
               
45-264
               

               
Cow position:
               
chr25:40658014-40658231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
176, 40
               

               
Conread position:
               
45-265
               

               
Cow position:
               
chr25:41392953-41392729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-358
               

               
Cow position:
               
chr25:14352008-14352322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 231
               

               
Conread position:
               
45-364
               

               
Cow position:
               
chr25:17418893-17419213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 231
               

               
Conread position:
               
45-395
               

               
Cow position:
               
chr25:2194661-2194988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
45-397
               

               
Cow position:
               
chr25:19339523-19339875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
45-402
               

               
Cow position:
               
chr25:26849338-26848978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 219
               

               
Conread position:
               
45-453
               

               
Cow position:
               
chr25:21950836-21951245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
45-520
               

               
Cow position:
               
chr25:23829404-23828941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 32
               

               
Conread position:
               
45-524
               

               
Cow position:
               
chr25:40957276-40956813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
45-527
               

               
Cow position:
               
chr25:9055915-9056351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
45-532
               

               
Cow position:
               
chr25:26225329-26224835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
45-546
               

               
Cow position:
               
chr25:11437092-11436609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 131
               

               
Conread position:
               
45-547
               

               
Cow position:
               
chr25:13325312-13325783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
45-548
               

               
Cow position:
               
chr25:22314911-22315420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 131
               

               
Conread position:
               
45-548
               

               
Cow position:
               
chr25:26654617-26655109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
45-549
               

               
Cow position:
               
chr25:33664186-33663693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 36
               

               
Conread position:
               
45-550
               

               
Cow position:
               
chr25:12097553-12098054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 157
               

               
Conread position:
               
45-552
               

               
Cow position:
               
chr25:18294604-18294090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
46-221
               

               
Cow position:
               
chr25:19366698-19366534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
32, 58
               

               
Conread position:
               
46-448
               

               
Cow position:
               
chr25:41363433-41363041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
176, 63
               

               
Conread position:
               
46-527
               

               
Cow position:
               
chr25:10643598-10643120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 222
               

               
Conread position:
               
46-532
               

               
Cow position:
               
chr25:14570083-14570548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
47-265
               

               
Cow position:
               
chr25:25783350-25783572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 85
               

               
Conread position:
               
47-364
               

               
Cow position:
               
chr25:10330682-10330388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
48-220
               

               
Cow position:
               
chr25:10867437-10867264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
48-220
               

               
Cow position:
               
chr25:32176506-32176333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 14
               

               
Conread position:
               
48-233
               

               
Cow position:
               
chr25:25961675-25961863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
30, 150
               

               
Conread position:
               
48-327
               

               
Cow position:
               
chr25:8347222-8347500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 138
               

               
Conread position:
               
49-151
               

               
Cow position:
               
chr25:17992427-17992323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-153
               

               
Cow position:
               
chr25:32278315-32278209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-168
               

               
Cow position:
               
chr25:22549900-22549778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-184
               

               
Cow position:
               
chr25:4860731-4860594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-189
               

               
Cow position:
               
chr25:3969110-3969251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
29, 102
               

               
Conread position:
               
49-193
               

               
Cow position:
               
chr25:6421337-6421195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
49-195
               

               
Cow position:
               
chr25:6606644-6606495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-210
               

               
Cow position:
               
chr25:33687184-33687018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
49-212
               

               
Cow position:
               
chr25:17119471-17119314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
49-215
               

               
Cow position:
               
chr25:11051097-11051256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
49-217
               

               
Cow position:
               
chr25:17585220-17585048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-217
               

               
Cow position:
               
chr25:32514128-32513958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
49-218
               

               
Cow position:
               
chr25:4488446-4488610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
49-219
               

               
Cow position:
               
chr25:12063923-12063752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
30, 135
               

               
Conread position:
               
49-219
               

               
Cow position:
               
chr25:13132480-13132649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 92
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:1096291-1096462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:6967057-6966886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:8231168-8230999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:9625521-9625696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:10698868-10699041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:12176484-12176311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:13446206-13446033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:13787665-13787837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:13960781-13960949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:14104011-14104168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:17426972-17427145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:17994578-17994406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:21961292-21961123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:23407130-23406955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:28863589-28863762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:30816539-30816714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:33025366-33025201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:34659390-34659218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr25:35585806-35585637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 70
               

               
Conread position:
               
49-222
               

               
Cow position:
               
chr25:17598780-17598604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-223
               

               
Cow position:
               
chr25:37469492-37469660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 54
               

               
Conread position:
               
49-224
               

               
Cow position:
               
chr25:6894207-6894373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
49-225
               

               
Cow position:
               
chr25:12750449-12750269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 150
               

               
Conread position:
               
49-225
               

               
Cow position:
               
chr25:31586754-31586930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 133
               

               
Conread position:
               
49-225
               

               
Cow position:
               
chr25:35617851-35618026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 56
               

               
Conread position:
               
49-227
               

               
Cow position:
               
chr25:36871573-36871751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
30, 154
               

               
Conread position:
               
49-229
               

               
Cow position:
               
chr25:12235042-12234864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
169, 122
               

               
Conread position:
               
49-233
               

               
Cow position:
               
chr25:18082320-18082137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 29
               

               
Conread position:
               
49-234
               

               
Cow position:
               
chr25:4049748-4049928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
49-238
               

               
Cow position:
               
chr25:18968986-18969180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-239
               

               
Cow position:
               
chr25:17682060-17681869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
28, 105
               

               
Conread position:
               
49-250
               

               
Cow position:
               
chr25:21209232-21209029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
49-256
               

               
Cow position:
               
chr25:2110797-2110998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 108
               

               
Conread position:
               
49-256
               

               
Cow position:
               
chr25:12359920-12360132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-256
               

               
Cow position:
               
chr25:25948681-25948477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
49-260
               

               
Cow position:
               
chr25:14274155-14274371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-261
               

               
Cow position:
               
chr25:6424871-6424661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr25:7445867-7446079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr25:9396169-9396380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
169, 35
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr25:2126183-2126396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr25:13333137-13333355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 128
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr25:18448555-18448770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 16
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr25:18490786-18491005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
30, 126
               

               
Conread position:
               
49-265
               

               
Cow position:
               
chr25:33839102-33839310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr25:448631-448413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
30, 127
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr25:9414842-9415064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr25:15368390-15368613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr25:23738740-23738518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr25:26618167-26618389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-266
               

               
Cow position:
               
chr25:41385392-41385171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 161
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr25:7609032-7609257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr25:9931788-9932013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr25:15412740-15412965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr25:17037170-17037395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr25:20771619-20771394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr25:21121299-21121524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-275
               

               
Cow position:
               
chr25:10011005-10010778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
183, 52
               

               
Conread position:
               
49-281
               

               
Cow position:
               
chr25:5271301-5271541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 197
               

               
Conread position:
               
49-307
               

               
Cow position:
               
chr25:24227626-24227358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
49-309
               

               
Cow position:
               
chr25:14954311-14954047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 92
               

               
Conread position:
               
49-309
               

               
Cow position:
               
chr25:24727072-24726807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 174
               

               
Conread position:
               
49-335
               

               
Cow position:
               
chr25:15694697-15694979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
49-336
               

               
Cow position:
               
chr25:12204184-12204474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr25:35602146-35602449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr25:35649552-35649855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-355
               

               
Cow position:
               
chr25:11054642-11054921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
49-357
               

               
Cow position:
               
chr25:5792089-5791781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
168, 16
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr25:19531099-19531412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr25:26319460-26319773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr25:28273029-28273342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr25:34121374-34121061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr25:34257702-34258016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr25:13062571-13062887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 224
               

               
Conread position:
               
49-366
               

               
Cow position:
               
chr25:18155310-18155627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
49-367
               

               
Cow position:
               
chr25:11097422-11097741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 226
               

               
Conread position:
               
49-368
               

               
Cow position:
               
chr25:9023359-9023663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
49-369
               

               
Cow position:
               
chr25:15319633-15319951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
49-369
               

               
Cow position:
               
chr25:25827175-25827502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
49-372
               

               
Cow position:
               
chr25:36779210-36779535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
49-373
               

               
Cow position:
               
chr25:3689129-3689454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-373
               

               
Cow position:
               
chr25:38972547-38972863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
49-375
               

               
Cow position:
               
chr25:12239423-12239110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
166, 52
               

               
Conread position:
               
49-388
               

               
Cow position:
               
chr25:20394921-20395241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr25:15618415-15618765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr25:35554397-35554746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr25:35589789-35590139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr25:18090636-18090991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 228
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr25:23351110-23351461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr25:25754281-25753932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
49-402
               

               
Cow position:
               
chr25:36392250-36391889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 223
               

               
Conread position:
               
49-405
               

               
Cow position:
               
chr25:10748786-10748434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
173, 71
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr25:20403005-20402636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-418
               

               
Cow position:
               
chr25:12817087-12817445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
49-426
               

               
Cow position:
               
chr25:9349543-9349197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
49-426
               

               
Cow position:
               
chr25:9847498-9847875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 148
               

               
Conread position:
               
49-433
               

               
Cow position:
               
chr25:5756405-5756779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 130
               

               
Conread position:
               
49-440
               

               
Cow position:
               
chr25:13708731-13709118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
49-451
               

               
Cow position:
               
chr25:18564209-18564599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr25:21024502-21024092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr25:30279494-30279092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 161
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr25:36761820-36762219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr25:41107472-41107866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 108
               

               
Conread position:
               
49-456
               

               
Cow position:
               
chr25:13569453-13569058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
29, 145
               

               
Conread position:
               
49-460
               

               
Cow position:
               
chr25:6226755-6227157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 201
               

               
Conread position:
               
49-461
               

               
Cow position:
               
chr25:33959546-33959129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
49-465
               

               
Cow position:
               
chr25:22198301-22198711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 227
               

               
Conread position:
               
49-469
               

               
Cow position:
               
chr25:11830182-11829797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 112
               

               
Conread position:
               
49-481
               

               
Cow position:
               
chr25:6683347-6682919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
49-481
               

               
Cow position:
               
chr25:21895173-21894744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 125
               

               
Conread position:
               
49-498
               

               
Cow position:
               
chr25:15714595-15715039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 182
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr25:2136073-2136507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 29
               

               
Conread position:
               
49-511
               

               
Cow position:
               
chr25:16866946-16867425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-513
               

               
Cow position:
               
chr25:11662101-11661648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 14
               

               
Conread position:
               
49-516
               

               
Cow position:
               
chr25:6948340-6947866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
169, 33
               

               
Conread position:
               
49-524
               

               
Cow position:
               
chr25:40388742-40388288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
49-525
               

               
Cow position:
               
chr25:20625215-20624762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
49-525
               

               
Cow position:
               
chr25:36746732-36746254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr25:4522103-4521645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr25:7641739-7641259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr25:17975653-17975203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 133
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr25:19129580-19130050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 28
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr25:23053270-23053759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 148
               

               
Conread position:
               
49-527
               

               
Cow position:
               
chr25:39549476-39549018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
255, 104
               

               
Conread position:
               
49-529
               

               
Cow position:
               
chr25:16319412-16318952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-532
               

               
Cow position:
               
chr25:7216542-7217018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 128
               

               
Conread position:
               
49-534
               

               
Cow position:
               
chr25:23334726-23335215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 210
               

               
Conread position:
               
49-535
               

               
Cow position:
               
chr25:4680953-4681409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
49-535
               

               
Cow position:
               
chr25:21193229-21192737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
49-537
               

               
Cow position:
               
chr25:15273404-15273870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
49-537
               

               
Cow position:
               
chr25:26523693-26524168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
49-546
               

               
Cow position:
               
chr25:6464315-6463815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
49-550
               

               
Cow position:
               
chr25:6470502-6469988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 36
               

               
Conread position:
               
49-550
               

               
Cow position:
               
chr25:10407704-10407193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 214
               

               
Conread position:
               
49-551
               

               
Cow position:
               
chr25:27621796-27622334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr25:3992504-3993001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 185
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr25:6474386-6473874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr25:20069438-20069933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
49-552
               

               
Cow position:
               
chr25:30319735-30319227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
50-186
               

               
Cow position:
               
chr25:7687857-7687719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
50-193
               

               
Cow position:
               
chr25:29336205-29336351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
50-220
               

               
Cow position:
               
chr25:41044531-41044700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 117
               

               
Conread position:
               
50-233
               

               
Cow position:
               
chr25:18262710-18262526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
50-258
               

               
Cow position:
               
chr25:36633273-36633064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 176
               

               
Conread position:
               
50-264
               

               
Cow position:
               
chr25:10366037-10365821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
25, 119
               

               
Conread position:
               
50-269
               

               
Cow position:
               
chr25:13840403-13840178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
50-379
               

               
Cow position:
               
chr25:1735595-1735279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 41
               

               
Conread position:
               
50-379
               

               
Cow position:
               
chr25:7800851-7801181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 197
               

               
Conread position:
               
50-379
               

               
Cow position:
               
chr25:20496254-20496573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
50-402
               

               
Cow position:
               
chr25:5539137-5539486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
28, 132
               

               
Conread position:
               
50-499
               

               
Cow position:
               
chr25:16064612-16065050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
50-524
               

               
Cow position:
               
chr25:20076208-20076672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
50-526
               

               
Cow position:
               
chr25:17658330-17658807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
50-527
               

               
Cow position:
               
chr25:8120492-8120977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
51-220
               

               
Cow position:
               
chr25:8482597-8482425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
51-220
               

               
Cow position:
               
chr25:26911040-26910875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 105
               

               
Conread position:
               
51-264
               

               
Cow position:
               
chr25:12195609-12195398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
27, 110
               

               
Conread position:
               
51-266
               

               
Cow position:
               
chr25:26111998-26112199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
167, 27
               

               
Conread position:
               
51-269
               

               
Cow position:
               
chr25:13315878-13315655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
51-402
               

               
Cow position:
               
chr25:18073268-18073623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 230
               

               
Conread position:
               
51-424
               

               
Cow position:
               
chr25:14117825-14118177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
51-456
               

               
Cow position:
               
chr25:41387793-41387409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
176, 9
               

               
Conread position:
               
51-517
               

               
Cow position:
               
chr25:22241721-22242135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
51-524
               

               
Cow position:
               
chr25:26087231-26087711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 221
               

               
Conread position:
               
51-531
               

               
Cow position:
               
chr25:21245890-21245393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
51-532
               

               
Cow position:
               
chr25:18721392-18720926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
52-187
               

               
Cow position:
               
chr25:23920136-23919998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
52-229
               

               
Cow position:
               
chr25:10366969-10366801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
25, 49
               

               
Conread position:
               
52-238
               

               
Cow position:
               
chr25:14823029-14822847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 84
               

               
Conread position:
               
52-258
               

               
Cow position:
               
chr25:27232053-27232261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
52-264
               

               
Cow position:
               
chr25:14225078-14224874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
52-356
               

               
Cow position:
               
chr25:30035269-30035566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
26, 43
               

               
Conread position:
               
52-516
               

               
Cow position:
               
chr25:20023682-20023209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 431
               

               
Conread position:
               
52-531
               

               
Cow position:
               
chr25:37448154-37448628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 107
               

               
Conread position:
               
52-540
               

               
Cow position:
               
chr25:24136718-24136256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
52-552
               

               
Cow position:
               
chr25:11956544-11957023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
53-220
               

               
Cow position:
               
chr25:4897815-4897981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
25, 123
               

               
Conread position:
               
53-245
               

               
Cow position:
               
chr25:27594021-27594212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
53-527
               

               
Cow position:
               
chr25:5834535-5834047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 112
               

               
Conread position:
               
53-535
               

               
Cow position:
               
chr25:35347623-35348111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 44
               

               
Conread position:
               
55-264
               

               
Cow position:
               
chr25:395074-395282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
24, 84
               

               
Conread position:
               
55-349
               

               
Cow position:
               
chr25:35340052-35340341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 110
               

               
Conread position:
               
56-162
               

               
Cow position:
               
chr25:9634641-9634748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
56-205
               

               
Cow position:
               
chr25:22730367-22730503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
56-209
               

               
Cow position:
               
chr25:22346364-22346519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
56-220
               

               
Cow position:
               
chr25:16231406-16231240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
56-227
               

               
Cow position:
               
chr25:9842723-9842894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
56-250
               

               
Cow position:
               
chr25:10137825-10138012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
170, 12
               

               
Conread position:
               
56-257
               

               
Cow position:
               
chr25:8485814-8485608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 124
               

               
Conread position:
               
56-265
               

               
Cow position:
               
chr25:20060310-20060096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
56-266
               

               
Cow position:
               
chr25:27504464-27504246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 108
               

               
Conread position:
               
56-334
               

               
Cow position:
               
chr25:23389554-23389282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
162, 45
               

               
Conread position:
               
56-441
               

               
Cow position:
               
chr25:4547997-4547615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 227
               

               
Conread position:
               
56-453
               

               
Cow position:
               
chr25:38850769-38850378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
56-456
               

               
Cow position:
               
chr25:33256091-33256472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
56-503
               

               
Cow position:
               
chr25:787990-788429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
56-522
               

               
Cow position:
               
chr25:7581702-7581231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 9
               

               
Conread position:
               
56-535
               

               
Cow position:
               
chr25:2414555-2415001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
56-537
               

               
Cow position:
               
chr25:21191208-21191683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 177
               

               
Conread position:
               
56-544
               

               
Cow position:
               
chr25:14791474-14791966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
56-548
               

               
Cow position:
               
chr25:1837961-1838458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
58-217
               

               
Cow position:
               
chr25:38569874-38569718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
58-349
               

               
Cow position:
               
chr25:5514730-5515025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 45
               

               
Conread position:
               
58-524
               

               
Cow position:
               
chr25:23410385-23410833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
59-373
               

               
Cow position:
               
chr25:14266776-14266483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
129, 41
               

               
Conread position:
               
59-551
               

               
Cow position:
               
chr25:12261170-12260668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
60-524
               

               
Cow position:
               
chr25:36081600-36082061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
60-537
               

               
Cow position:
               
chr25:12778807-12778355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 210
               

               
Conread position:
               
61-246
               

               
Cow position:
               
chr25:40151125-40151307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 62
               

               
Conread position:
               
61-402
               

               
Cow position:
               
chr25:5572072-5571736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 93
               

               
Conread position:
               
62-516
               

               
Cow position:
               
chr25:36535705-36535233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
62-524
               

               
Cow position:
               
chr25:14512843-14513299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
62-531
               

               
Cow position:
               
chr25:38957707-38958145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 40
               

               
Conread position:
               
64-227
               

               
Cow position:
               
chr25:33112269-33112105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 134
               

               
Conread position:
               
64-419
               

               
Cow position:
               
chr25:2046825-2046479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 113
               

               
Conread position:
               
65-250
               

               
Cow position:
               
chr25:10657289-10657109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 14
               

               
Conread position:
               
65-262
               

               
Cow position:
               
chr25:17712266-17712464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
161, 106
               

               
Conread position:
               
65-265
               

               
Cow position:
               
chr25:6003259-6003061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
159, 172
               

               
Conread position:
               
65-333
               

               
Cow position:
               
chr25:12824285-12824022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 108
               

               
Conread position:
               
65-393
               

               
Cow position:
               
chr25:9642088-9642413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 27
               

               
Conread position:
               
65-453
               

               
Cow position:
               
chr25:14196585-14196976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 235
               

               
Conread position:
               
65-453
               

               
Cow position:
               
chr25:28188216-28187830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 39
               

               
Conread position:
               
65-469
               

               
Cow position:
               
chr25:23917574-23917973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
65-501
               

               
Cow position:
               
chr25:6237853-6238295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 153
               

               
Conread position:
               
65-516
               

               
Cow position:
               
chr25:35612569-35612115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
52, 98
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr25:9990361-9989898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 95
               

               
Conread position:
               
65-552
               

               
Cow position:
               
chr25:22203960-22203477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 216
               

               
Conread position:
               
66-193
               

               
Cow position:
               
chr25:8961194-8961319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
66-218
               

               
Cow position:
               
chr25:5567999-5567846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
66-250
               

               
Cow position:
               
chr25:18935144-18934957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
13, 111
               

               
Conread position:
               
66-262
               

               
Cow position:
               
chr25:18452857-18453051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
66-264
               

               
Cow position:
               
chr25:10012316-10012124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
66-268
               

               
Cow position:
               
chr25:11823792-11823594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
153, 36
               

               
Conread position:
               
66-404
               

               
Cow position:
               
chr25:12081582-12081256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
66-411
               

               
Cow position:
               
chr25:18075402-18075737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
157, 51
               

               
Conread position:
               
66-411
               

               
Cow position:
               
chr25:22910111-22909784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
255, 45
               

               
Conread position:
               
66-412
               

               
Cow position:
               
chr25:34668976-34669316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
66-440
               

               
Cow position:
               
chr25:36037047-36036677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 106
               

               
Conread position:
               
66-467
               

               
Cow position:
               
chr25:33978468-33978092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 80
               

               
Conread position:
               
66-516
               

               
Cow position:
               
chr25:40321559-40321111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 35
               

               
Conread position:
               
66-524
               

               
Cow position:
               
chr25:11131318-11131754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
179, 39
               

               
Conread position:
               
66-524
               

               
Cow position:
               
chr25:27535177-27534745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
66-525
               

               
Cow position:
               
chr25:37594147-37594579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
181, 95
               

               
Conread position:
               
66-527
               

               
Cow position:
               
chr25:18310534-18310993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 91
               

               
Conread position:
               
66-527
               

               
Cow position:
               
chr25:38135480-38135949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 94
               

               
Conread position:
               
66-537
               

               
Cow position:
               
chr25:14833922-14833461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
66-550
               

               
Cow position:
               
chr25:20007873-20008357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
66-552
               

               
Cow position:
               
chr25:8225830-8226325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
161, 296
               

               
Conread position:
               
66-552
               

               
Cow position:
               
chr25:8512360-8511889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
67-264
               

               
Cow position:
               
chr25:26058319-26058516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
151, 94
               

               
Conread position:
               
67-430
               

               
Cow position:
               
chr25:33691288-33691650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 34
               

               
Conread position:
               
67-455
               

               
Cow position:
               
chr25:38981845-38982210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
68-235
               

               
Cow position:
               
chr25:7440590-7440750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
95, 104
               

               
Conread position:
               
68-240
               

               
Cow position:
               
chr25:15412035-15411860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
68-252
               

               
Cow position:
               
chr25:18130810-18130990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
174, 8
               

               
Conread position:
               
68-264
               

               
Cow position:
               
chr25:24168163-24167972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
155, 33
               

               
Conread position:
               
68-345
               

               
Cow position:
               
chr25:35344773-35345038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
254, 93
               

               
Conread position:
               
68-350
               

               
Cow position:
               
chr25:35625438-35625172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
68-421
               

               
Cow position:
               
chr25:6886244-6885888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
68-527
               

               
Cow position:
               
chr25:26700775-26701216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 32
               

               
Conread position:
               
69-264
               

               
Cow position:
               
chr25:16400514-16400333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
70-461
               

               
Cow position:
               
chr25:17566324-17566712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 103
               

               
Conread position:
               
70-524
               

               
Cow position:
               
chr25:9269111-9269533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 7
               

               
Conread position:
               
72-456
               

               
Cow position:
               
chr25:12117247-12116879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 43
               

               
Conread position:
               
74-456
               

               
Cow position:
               
chr25:15254590-15254230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 100
               

               
Conread position:
               
76-461
               

               
Cow position:
               
chr25:32191414-32191777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 45
               

               
Conread position:
               
76-552
               

               
Cow position:
               
chr25:18487417-18487893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
132, 41
               

               
Conread position:
               
77-189
               

               
Cow position:
               
chr25:13443856-13443744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
77-200
               

               
Cow position:
               
chr25:14809054-14809178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
77-206
               

               
Cow position:
               
chr25:2517290-2517414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
77-209
               

               
Cow position:
               
chr25:12174761-12174629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
77-212
               

               
Cow position:
               
chr25:16691260-16691395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
77-217
               

               
Cow position:
               
chr25:14191552-14191412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
77-218
               

               
Cow position:
               
chr25:433332-433202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
77-222
               

               
Cow position:
               
chr25:8141745-8141603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
77-224
               

               
Cow position:
               
chr25:13566589-13566734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
77-314
               

               
Cow position:
               
chr25:6814995-6815219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
188, 25
               

               
Conread position:
               
77-334
               

               
Cow position:
               
chr25:19633873-19633629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
77-336
               

               
Cow position:
               
chr25:13642572-13642314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
149, 81
               

               
Conread position:
               
77-345
               

               
Cow position:
               
chr25:8918534-8918269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
66, 197
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr25:9961434-9961162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
64, 221
               

               
Conread position:
               
77-354
               

               
Cow position:
               
chr25:16001777-16001509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
77-431
               

               
Cow position:
               
chr25:5407494-5407835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
168, 28
               

               
Conread position:
               
77-455
               

               
Cow position:
               
chr25:10949808-10949460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
367, 24
               

               
Conread position:
               
77-481
               

               
Cow position:
               
chr25:24452424-24452009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
77-527
               

               
Cow position:
               
chr25:7306042-7306486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 191
               

               
Conread position:
               
77-527
               

               
Cow position:
               
chr25:19679086-19679548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 162
               

               
Conread position:
               
77-532
               

               
Cow position:
               
chr25:33550250-33550713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
78-260
               

               
Cow position:
               
chr25:6891775-6891601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 75
               

               
Conread position:
               
78-265
               

               
Cow position:
               
chr25:21266751-21266940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
78-400
               

               
Cow position:
               
chr25:5837221-5836895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
146, 163
               

               
Conread position:
               
78-545
               

               
Cow position:
               
chr25:5847061-5846594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 32
               

               
Conread position:
               
78-552
               

               
Cow position:
               
chr25:20785836-20785366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 24
               

               
Conread position:
               
79-264
               

               
Cow position:
               
chr25:36026753-36026938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
145, 99
               

               
Conread position:
               
79-456
               

               
Cow position:
               
chr25:11585264-11585636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
80-205
               

               
Cow position:
               
chr25:12997096-12997223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
80-229
               

               
Cow position:
               
chr25:32899056-32898907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
141, 21
               

               
Conread position:
               
80-229
               

               
Cow position:
               
chr25:36557438-36557582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
80-265
               

               
Cow position:
               
chr25:14467335-14467149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
138, 19
               

               
Conread position:
               
80-345
               

               
Cow position:
               
chr25:4002543-4002809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
121, 108
               

               
Conread position:
               
81-266
               

               
Cow position:
               
chr25:33260488-33260669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
161, 90
               

               
Conread position:
               
81-527
               

               
Cow position:
               
chr25:24669682-24669256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 20
               

               
Conread position:
               
81-546
               

               
Cow position:
               
chr25:33457454-33457939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 208
               

               
Conread position:
               
83-539
               

               
Cow position:
               
chr25:22575768-22575340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
136, 21
               

               
Conread position:
               
83-551
               

               
Cow position:
               
chr25:24405986-24405533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 88
               

               
Conread position:
               
84-208
               

               
Cow position:
               
chr25:7479710-7479831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
84-263
               

               
Cow position:
               
chr25:20085038-20085214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 89
               

               
Conread position:
               
84-359
               

               
Cow position:
               
chr25:20211335-20211059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 200
               

               
Conread position:
               
84-411
               

               
Cow position:
               
chr25:20020236-20019930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
84-461
               

               
Cow position:
               
chr25:12294000-12293624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 210
               

               
Conread position:
               
88-264
               

               
Cow position:
               
chr25:19576685-19576515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
88-441
               

               
Cow position:
               
chr25:18293512-18293848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
130, 13
               

               
Conread position:
               
88-527
               

               
Cow position:
               
chr25:18265919-18266339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
130, 13
               

               
Conread position:
               
89-216
               

               
Cow position:
               
chr25:17475768-17475638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
89-483
               

               
Cow position:
               
chr25:18988132-18988532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 352
               

               
Conread position:
               
89-525
               

               
Cow position:
               
chr25:11139402-11139835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
138, 49
               

               
Conread position:
               
92-264
               

               
Cow position:
               
chr25:24008418-24008245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
124, 79
               

               
Conread position:
               
92-434
               

               
Cow position:
               
chr25:15377092-15377422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 67
               

               
Conread position:
               
92-499
               

               
Cow position:
               
chr25:41132596-41132198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
127, 92
               

               
Conread position:
               
92-516
               

               
Cow position:
               
chr25:22369152-22369571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 69
               

               
Conread position:
               
92-525
               

               
Cow position:
               
chr25:21289099-21289543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 194
               

               
Conread position:
               
92-551
               

               
Cow position:
               
chr25:11666415-11666846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
93-214
               

               
Cow position:
               
chr25:33572446-33572325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
93-339
               

               
Cow position:
               
chr25:11978938-11978699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
136, 24
               

               
Conread position:
               
93-527
               

               
Cow position:
               
chr25:23324604-23324177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
126, 178
               

               
Conread position:
               
94-342
               

               
Cow position:
               
chr25:7329305-7329553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 165
               

               
Conread position:
               
94-376
               

               
Cow position:
               
chr25:8560630-8560907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
95-264
               

               
Cow position:
               
chr25:15286778-15286612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
149, 83
               

               
Conread position:
               
95-405
               

               
Cow position:
               
chr25:38425127-38425428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
95-525
               

               
Cow position:
               
chr25:1762869-1763278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
129, 71
               

               
Conread position:
               
95-552
               

               
Cow position:
               
chr25:19478449-19478891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 133
               

               
Conread position:
               
96-551
               

               
Cow position:
               
chr25:13380853-13380379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 200
               

               
Conread position:
               
97-455
               

               
Cow position:
               
chr25:61421-61767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 74
               

               
Conread position:
               
97-491
               

               
Cow position:
               
chr25:12840954-12840570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
93, 78
               

               
Conread position:
               
98-259
               

               
Cow position:
               
chr25:16316662-16316818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
117, 66
               

               
Conread position:
               
98-527
               

               
Cow position:
               
chr25:26338210-26338656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
89, 191
               

               
Conread position:
               
99-264
               

               
Cow position:
               
chr25:6256172-6256007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
127, 41
               

               
Conread position:
               
100-469
               

               
Cow position:
               
chr25:35826509-35826152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 50
               

               
Conread position:
               
101-535
               

               
Cow position:
               
chr25:29826178-29826621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 219
               

               
Conread position:
               
103-357
               

               
Cow position:
               
chr25:36033206-36033457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 88
               

               
Conread position:
               
103-453
               

               
Cow position:
               
chr25:6961380-6961038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 45
               

               
Conread position:
               
103-453
               

               
Cow position:
               
chr25:10218281-10217934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
103-527
               

               
Cow position:
               
chr25:29312572-29312160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
141, 17
               

               
Conread position:
               
105-221
               

               
Cow position:
               
chr25:35902011-35902126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
105-469
               

               
Cow position:
               
chr25:34169726-34170077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 69
               

               
Conread position:
               
107-452
               

               
Cow position:
               
chr25:25861586-25861237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
110-264
               

               
Cow position:
               
chr25:2595954-2596115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
110-462
               

               
Cow position:
               
chr25:7007693-7008034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 49
               

               
Conread position:
               
112-461
               

               
Cow position:
               
chr25:17914559-17914903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
107, 44
               

               
Conread position:
               
116-526
               

               
Cow position:
               
chr25:26090029-26089632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 12
               

               
Conread position:
               
116-532
               

               
Cow position:
               
chr25:12899538-12899967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 12
               

               
Conread position:
               
117-512
               

               
Cow position:
               
chr25:2624588-2624975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 163
               

               
Conread position:
               
118-462
               

               
Cow position:
               
chr25:12319553-12319231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 46
               

               
Conread position:
               
119-527
               

               
Cow position:
               
chr25:14720539-14720928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
119-535
               

               
Cow position:
               
chr25:34768934-34768544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 41
               

               
Conread position:
               
125-365
               

               
Cow position:
               
chr25:26270142-26269910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
126-537
               

               
Cow position:
               
chr25:40905036-40904622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
162, 37
               

               
Conread position:
               
127-412
               

               
Cow position:
               
chr25:16714480-16714196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
106, 66
               

               
Conread position:
               
127-462
               

               
Cow position:
               
chr25:36017334-36017657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
98, 18
               

               
Conread position:
               
127-536
               

               
Cow position:
               
chr25:13272363-13272774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 104
               

               
Conread position:
               
127-552
               

               
Cow position:
               
chr25:22178715-22179129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
128-527
               

               
Cow position:
               
chr25:8157715-8157319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
139, 74
               

               
Conread position:
               
129-230
               

               
Cow position:
               
chr25:21057874-21057772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
129-453
               

               
Cow position:
               
chr25:20133520-20133200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
5, 46
               

               
Conread position:
               
129-508
               

               
Cow position:
               
chr25:6977774-6978160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
89, 125
               

               
Conread position:
               
129-519
               

               
Cow position:
               
chr25:17704545-17704927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 149
               

               
Conread position:
               
131-552
               

               
Cow position:
               
chr25:7750248-7750668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 139
               

               
Conread position:
               
132-527
               

               
Cow position:
               
chr25:27801089-27801475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
145, 26
               

               
Conread position:
               
136-541
               

               
Cow position:
               
chr25:15410108-15409711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
138-549
               

               
Cow position:
               
chr25:12755686-12755270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
140-264
               

               
Cow position:
               
chr25:35110323-35110196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
140-453
               

               
Cow position:
               
chr25:13672195-13672518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 144
               

               
Conread position:
               
140-516
               

               
Cow position:
               
chr25:32453591-32453245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 134
               

               
Conread position:
               
141-411
               

               
Cow position:
               
chr25:17342257-17342531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 145
               

               
Conread position:
               
141-550
               

               
Cow position:
               
chr25:26133846-26134263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
144-456
               

               
Cow position:
               
chr25:18905692-18906003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
81, 151
               

               
Conread position:
               
145-517
               

               
Cow position:
               
chr25:24207608-24207226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
150-512
               

               
Cow position:
               
chr25:17190927-17190573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr25:16555576-16555804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 160
               

               
Conread position:
               
151-540
               

               
Cow position:
               
chr25:11315724-11316112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 117
               

               
Conread position:
               
156-449
               

               
Cow position:
               
chr25:18894900-18894617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 127
               

               
Conread position:
               
156-549
               

               
Cow position:
               
chr25:26259672-26259296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
63, 142
               

               
Conread position:
               
159-533
               

               
Cow position:
               
chr25:13472068-13471685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 79
               

               
Conread position:
               
159-550
               

               
Cow position:
               
chr25:20047328-20047727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
64, 122
               

               
Conread position:
               
163-462
               

               
Cow position:
               
chr25:17144253-17144562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
64, 26
               

               
Conread position:
               
164-345
               

               
Cow position:
               
chr25:33267550-33267732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
54, 75
               

               
Conread position:
               
164-493
               

               
Cow position:
               
chr25:32277772-32277451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 145
               

               
Conread position:
               
164-514
               

               
Cow position:
               
chr25:23245182-23244821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
165-547
               

               
Cow position:
               
chr25:26136996-26136603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 135
               

               
Conread position:
               
165-552
               

               
Cow position:
               
chr25:5920766-5921165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 153
               

               
Conread position:
               
169-409
               

               
Cow position:
               
chr25:19317094-19317336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
173-548
               

               
Cow position:
               
chr25:26679064-26679441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
174-449
               

               
Cow position:
               
chr25:22751175-22750896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
17, 133
               

               
Conread position:
               
174-528
               

               
Cow position:
               
chr25:30462462-30462124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
52, 115
               

               
Conread position:
               
174-533
               

               
Cow position:
               
chr25:41151123-41150762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 83
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr25:21893175-21893537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
174-535
               

               
Cow position:
               
chr25:6996619-6996990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 142
               

               
Conread position:
               
174-537
               

               
Cow position:
               
chr25:17991746-17991391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
175-513
               

               
Cow position:
               
chr25:23779486-23779151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
175-516
               

               
Cow position:
               
chr25:13443566-13443222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 20
               

               
Conread position:
               
175-544
               

               
Cow position:
               
chr25:9002513-9002881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
51, 118
               

               
Conread position:
               
177-532
               

               
Cow position:
               
chr25:30852597-30852966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 69
               

               
Conread position:
               
178-521
               

               
Cow position:
               
chr25:7380999-7380648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
179-527
               

               
Cow position:
               
chr25:31732492-31732137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
180-526
               

               
Cow position:
               
chr25:24651608-24651262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
181-551
               

               
Cow position:
               
chr25:36020251-36020630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
183-448
               

               
Cow position:
               
chr25:8961620-8961880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 86
               

               
Conread position:
               
185-547
               

               
Cow position:
               
chr25:30618914-30619285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 114
               

               
Conread position:
               
186-464
               

               
Cow position:
               
chr25:24843961-24844239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 171
               

               
Conread position:
               
187-547
               

               
Cow position:
               
chr25:21668096-21668463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 94
               

               
Conread position:
               
189-449
               

               
Cow position:
               
chr25:6687802-6688056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
190-518
               

               
Cow position:
               
chr25:7673133-7673494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
190-548
               

               
Cow position:
               
chr25:12609198-12609562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
195-527
               

               
Cow position:
               
chr25:22756467-22756808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
196-400
               

               
Cow position:
               
chr25:16570474-16570664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
135, 34
               

               
Conread position:
               
196-552
               

               
Cow position:
               
chr25:34979008-34978639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 83
               
UCSC Genome Browser

               
Conread position:
               
200-531
               

               
Cow position:
               
chr25:6928645-6928317 (view  custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
37, 83
               
UCSC Genome Browser

               
               
               
Conread position:
200-532

               
               
               
Cow position:
chr25:33557139-33557467 (view  custom track)

               
               
               
Alignm length:
341

               
               
               
Alignm identity:
242

               
               
               
Alignm E-value:
8.40779e-45

               
               
               
Alignm gaps (pig, cow):
83, 65
UCSC Genome Browser

               
               
               
Conread position:
200-535

               
               
               
Cow position:
chr25:4245553-4245869 (view  custom track)

               
               
               
Alignm length:
340

               
               
               
Alignm identity:
254

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
25, 68

               
               
               Conread position:200-548
               
               
               Cow position:chr25:28986731-28987080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:201-522
               
               
               Cow position:chr25:19364194-19363869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:201-550
               
               
               Cow position:chr25:12510145-12509801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 45

               
               
               Conread position:202-406
               
               
               Cow position:chr25:24051828-24052034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:202-546
               
               
               Cow position:chr25:33686814-33686466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):251, 87

               
               
               Conread position:203-522
               
               
               Cow position:chr25:36835558-36835241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:203-535
               
               
               Cow position:chr25:20523364-20523034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 69

               
               
               Conread position:204-397
               
               
               Cow position:chr25:7449675-7449859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:204-452
               
               
               Cow position:chr25:14157489-14157740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:204-548
               
               
               Cow position:chr25:11051397-11051740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:204-549
               
               
               Cow position:chr25:18202059-18201707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:204-551
               
               
               Cow position:chr25:12305149-12305497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):249, 5

               
               
               Conread position:204-552
               
               
               Cow position:chr25:24203125-24202789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:210-532
               
               
               Cow position:chr25:4488793-4489104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):15, 64

               
               
               Conread position:215-549
               
               
               Cow position:chr25:17724936-17725250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:217-484
               
               
               Cow position:chr25:23745144-23745406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:217-524
               
               
               Cow position:chr25:22730717-22731018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):156, 39

               
               
               Conread position:217-546
               
               
               Cow position:chr25:17119627-17119960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):243, 58

               
               
               Conread position:218-552
               
               
               Cow position:chr25:7440916-7441230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:225-456
               
               
               Cow position:chr25:13139710-13139928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:225-456
               
               
               Cow position:chr25:13566852-13567085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):67, 79

               
               
               Conread position:225-514
               
               
               Cow position:chr25:36872252-36872546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):219, 67

               
               
               Conread position:225-524
               
               
               Cow position:chr25:11433063-11432757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:225-527
               
               
               Cow position:chr25:1824205-1823895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:225-535
               
               
               Cow position:chr25:9843066-9843385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 58

               
               
               Conread position:225-546
               
               
               Cow position:chr25:30816776-30817110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:227-456
               
               
               Cow position:chr25:12252920-12252691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 135

               
               
               Conread position:227-456
               
               
               Cow position:chr25:22341418-22341646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:227-532
               
               
               Cow position:chr25:17474619-17474312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:228-527
               
               
               Cow position:chr25:36555796-36555503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:232-397
               
               
               Cow position:chr25:26642481-26642646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):144, 73

               
               
               Conread position:244-456
               
               
               Cow position:chr25:4947872-4948080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:248-452
               
               
               Cow position:chr25:26051814-26052016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):121, 51

               
               
               Conread position:248-527
               
               
               Cow position:chr25:6292481-6292765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):194, 51

               
               
               Conread position:248-527
               
               
               Cow position:chr25:20143633-20143355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 52

               
               
               Conread position:249-545
               
               
               Cow position:chr25:13621445-13621146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:249-550
               
               
               Cow position:chr25:12806958-12807263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:251-462
               
               
               Cow position:chr25:31065110-31065306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:263-527
               
               
               Cow position:chr25:40682668-40682933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):175, 13

               
               
               Conread position:269-551
               
               
               Cow position:chr25:27595498-27595779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):185, 35

               
               
               Conread position:280-441
               
               
               Cow position:chr25:36019723-36019566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:280-450
               
               
               Cow position:chr25:7379206-7379035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:280-455
               
               
               Cow position:chr25:7012373-7012542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):140, 15

               
               
               Conread position:280-461
               
               
               Cow position:chr25:23504992-23505175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:280-461
               
               
               Cow position:chr25:36021268-36021444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:280-535
               
               
               Cow position:chr25:13767914-13768162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 20

               
               
               Conread position:280-552
               
               
               Cow position:chr25:33555553-33555835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):175, 12

               
               
               Conread position:280-552
               
               
               Cow position:chr25:36074055-36073780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):24, 96

               
               
               Conread position:281-548
               
               
               Cow position:chr25:7551415-7551150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):171, 34

               
               
               Conread position:282-522
               
               
               Cow position:chr25:1840268-1840512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:282-522
               
               
               Cow position:chr25:26306259-26306012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 22

               
               
               Conread position:282-535
               
               
               Cow position:chr25:35762537-35762793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):118, 27

               
               
               Conread position:283-525
               
               
               Cow position:chr25:17403432-17403670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):169, 16

               
               
               Conread position:284-447
               
               
               Cow position:chr25:23817894-23817731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:284-458
               
               
               Cow position:chr25:18542000-18541826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:284-522
               
               
               Cow position:chr25:36716865-36717103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:288-552
               
               
               Cow position:chr25:5637434-5637165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):174, 17

               
               
               Conread position:290-439
               
               
               Cow position:chr25:447312-447165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:290-462
               
               
               Cow position:chr25:36045638-36045801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:291-527
               
               
               Cow position:chr25:18810294-18810527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):23, 156

               
               
               Conread position:291-527
               
               
               Cow position:chr25:22298590-22298828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:292-552
               
               
               Cow position:chr25:37332082-37331824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 62

               
               
               Conread position:293-512
               
               
               Cow position:chr25:2041916-2041702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:294-527
               
               
               Cow position:chr25:35052666-35052422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:295-525
               
               
               Cow position:chr25:11823473-11823250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):199, 150

               
               
               Conread position:295-535
               
               
               Cow position:chr25:22348506-22348254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:297-430
               
               
               Cow position:chr25:14211591-14211721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:297-527
               
               
               Cow position:chr25:20487485-20487239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:298-519
               
               
               Cow position:chr25:35339230-35339002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:298-548
               
               
               Cow position:chr25:18760748-18760498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):152, 235

               
               
               Conread position:301-456
               
               
               Cow position:chr25:21209007-21208855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:302-522
               
               
               Cow position:chr25:26072593-26072372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):149, 59

               
               
               Conread position:302-525
               
               
               Cow position:chr25:33311363-33311129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:303-433
               
               
               Cow position:chr25:37606326-37606456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:303-527
               
               
               Cow position:chr25:7726627-7726861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:303-552
               
               
               Cow position:chr25:17918940-17919198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):139, 8

               
               
               Conread position:304-451
               
               
               Cow position:chr25:20461074-20461215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:304-455
               
               
               Cow position:chr25:7799514-7799664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:304-461
               
               
               Cow position:chr25:19421790-19421952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:304-462
               
               
               Cow position:chr25:15463553-15463711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):138, 129

               
               
               Conread position:304-511
               
               
               Cow position:chr25:9107557-9107353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 5

               
               
               Conread position:304-522
               
               
               Cow position:chr25:13222866-13223088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 216

               
               
               Conread position:304-535
               
               
               Cow position:chr25:18929226-18929002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:304-544
               
               
               Cow position:chr25:19584330-19584582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):86, 237

               
               
               Conread position:304-551
               
               
               Cow position:chr25:9025092-9025343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:304-552
               
               
               Cow position:chr25:13826403-13826654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 5

               
               
               Conread position:305-448
               
               
               Cow position:chr25:23473407-23473542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:305-462
               
               
               Cow position:chr25:40931244-40931397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:306-441
               
               
               Cow position:chr25:14809241-14809376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:306-524
               
               
               Cow position:chr25:11760484-11760267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):21, 74

               
               
               Conread position:306-527
               
               
               Cow position:chr25:35109301-35109082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:306-528
               
               
               Cow position:chr25:14225331-14225564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):145, 13

               
               
               Conread position:306-548
               
               
               Cow position:chr25:3346226-3345983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):152, 60

               
               
               Conread position:307-523
               
               
               Cow position:chr25:1925623-1925421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):54, 64

               
               
               Conread position:307-524
               
               
               Cow position:chr25:36840364-36840575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:309-440
               
               
               Cow position:chr25:25911622-25911750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 112

               
               
               Conread position:309-462
               
               
               Cow position:chr25:4009064-4009217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:309-462
               
               
               Cow position:chr25:26160936-26161093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:309-477
               
               
               Cow position:chr25:5920052-5920219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):155, 126

               
               
               Conread position:309-521
               
               
               Cow position:chr25:16372522-16372743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:309-524
               
               
               Cow position:chr25:10364364-10364161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:309-524
               
               
               Cow position:chr25:11276520-11276740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):125, 184

               
               
               Conread position:309-524
               
               
               Cow position:chr25:18288797-18288577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 50

               
               
               Conread position:309-527
               
               
               Cow position:chr25:11780248-11780460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:309-548
               
               
               Cow position:chr25:28597641-28597387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:309-549
               
               
               Cow position:chr25:37254856-37255076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:310-527
               
               
               Cow position:chr25:13823747-13823523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):135, 108

               
               
               Conread position:310-537
               
               
               Cow position:chr25:28668078-28667843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:311-462
               
               
               Cow position:chr25:30625110-30624959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:311-463
               
               
               Cow position:chr25:13503406-13503559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:311-470
               
               
               Cow position:chr25:6134117-6133960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:312-524
               
               
               Cow position:chr25:9615811-9616031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:318-451
               
               
               Cow position:chr25:30064934-30064800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:318-517
               
               
               Cow position:chr25:24862855-24863054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:319-549
               
               
               Cow position:chr25:2111030-2111253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:321-516
               
               
               Cow position:chr25:36873350-36873152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:321-527
               
               
               Cow position:chr25:23520045-23519841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:321-533
               
               
               Cow position:chr25:3744762-3744532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:180
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:321-537
               
               
               Cow position:chr25:20085554-20085785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:322-505
               
               
               Cow position:chr25:6718262-6718080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:322-525
               
               
               Cow position:chr25:10791830-10791625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):139, 89

               
               
               Conread position:322-525
               
               
               Cow position:chr25:31514165-31514378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:322-544
               
               
               Cow position:chr25:9461569-9461789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 20

               
               
               Conread position:323-453
               
               
               Cow position:chr25:15218121-15218247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:323-456
               
               
               Cow position:chr25:36120482-36120616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:323-548
               
               
               Cow position:chr25:33101620-33101400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:323-552
               
               
               Cow position:chr25:433063-432827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):133, 184

               
               
               Conread position:324-449
               
               
               Cow position:chr25:4221617-4221492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:325-462
               
               
               Cow position:chr25:15695253-15695387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:325-527
               
               
               Cow position:chr25:9574143-9573939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):137, 50

               
               
               Conread position:325-527
               
               
               Cow position:chr25:36873069-36872859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:326-456
               
               
               Cow position:chr25:12195238-12195114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:326-524
               
               
               Cow position:chr25:11857998-11857793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:326-532
               
               
               Cow position:chr25:2361825-2362026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:326-550
               
               
               Cow position:chr25:20202901-20203126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 217

               
               
               Conread position:327-525
               
               
               Cow position:chr25:7277336-7277131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:330-549
               
               
               Cow position:chr25:14419693-14419911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):54, 76

               
               
               Conread position:331-456
               
               
               Cow position:chr25:33267953-33268075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:331-527
               
               
               Cow position:chr25:23998931-23998743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:331-548
               
               
               Cow position:chr25:8347645-8347870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:332-456
               
               
               Cow position:chr25:34967515-34967391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:333-527
               
               
               Cow position:chr25:31657282-31657084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:335-552
               
               
               Cow position:chr25:14164194-14164416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:336-462
               
               
               Cow position:chr25:14264954-14265078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:338-533
               
               
               Cow position:chr25:1802607-1802814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:339-462
               
               
               Cow position:chr25:8222910-8223029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:339-519
               
               
               Cow position:chr25:36341018-36340853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:339-535
               
               
               Cow position:chr25:27916016-27916207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):186, 39

               
               
               Conread position:340-552
               
               
               Cow position:chr25:18551332-18551112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 72

               
               
               Conread position:341-532
               
               
               Cow position:chr25:11060135-11060336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):116, 100

               
               
               Conread position:341-532
               
               
               Cow position:chr25:28945023-28945217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):113, 159

               
               
               Conread position:341-548
               
               
               Cow position:chr25:2662402-2662611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:341-549
               
               
               Cow position:chr25:36369822-36370041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):115, 63

               
               
               Conread position:341-549
               
               
               Cow position:chr25:36375513-36375732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):115, 63

               
               
               Conread position:341-551
               
               
               Cow position:chr25:15573391-15573597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:342-527
               
               
               Cow position:chr25:35902751-35902942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):109, 177

               
               
               Conread position:342-551
               
               
               Cow position:chr25:24115312-24115095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:344-517
               
               
               Cow position:chr25:18646591-18646766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:344-546
               
               
               Cow position:chr25:18491044-18491253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 85

               
               
               Conread position:345-455
               
               
               Cow position:chr25:7012673-7012783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 101

               
               
               Conread position:346-541
               
               
               Cow position:chr25:15349897-15349698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:164
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):112, 46

               
               
               Conread position:348-523
               
               
               Cow position:chr25:22734018-22734198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:349-526
               
               
               Cow position:chr25:7684887-7684704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):109, 46

               
               
               Conread position:350-532
               
               
               Cow position:chr25:31926365-31926183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:150
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):96, 112

               
               
               Conread position:354-453
               
               
               Cow position:chr25:9642517-9642616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:354-520
               
               
               Cow position:chr25:26156761-26156596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:354-523
               
               
               Cow position:chr25:36155834-36156003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 52

               
               
               Conread position:354-524
               
               
               Cow position:chr25:29903651-29903826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:354-527
               
               
               Cow position:chr25:9023767-9023941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):96, 65

               
               
               Conread position:354-527
               
               
               Cow position:chr25:33100591-33100768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:354-540
               
               
               Cow position:chr25:26269701-26269505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:354-541
               
               
               Cow position:chr25:7032199-7032386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 58

               
               
               Conread position:354-550
               
               
               Cow position:chr25:7311379-7311173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):102, 7

               
               
               Conread position:354-551
               
               
               Cow position:chr25:7403325-7403116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:354-552
               
               
               Cow position:chr25:22565942-22565745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):104, 49

               
               
               Conread position:355-524
               
               
               Cow position:chr25:10817405-10817233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 26

               
               
               Conread position:355-548
               
               
               Cow position:chr25:28662127-28662322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):95, 178

               
               
               Conread position:357-524
               
               
               Cow position:chr25:33776074-33776253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:357-534
               
               
               Cow position:chr25:32745357-32745538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:357-551
               
               
               Cow position:chr25:3141522-3141719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):81, 63

               
               
               Conread position:357-552
               
               
               Cow position:chr25:24147927-24147737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:358-456
               
               
               Cow position:chr25:27884389-27884291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:359-532
               
               
               Cow position:chr25:36070672-36070848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:359-548
               
               
               Cow position:chr25:27594352-27594539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):90, 76

               
               
               Conread position:361-526
               
               
               Cow position:chr25:14210006-14210171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:144
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:361-549
               
               
               Cow position:chr25:18934612-18934417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:362-532
               
               
               Cow position:chr25:4157222-4157044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:363-532
               
               
               Cow position:chr25:20063299-20063461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:364-523
               
               
               Cow position:chr25:10856688-10856524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):92, 136

               
               
               Conread position:365-494
               
               
               Cow position:chr25:19106445-19106573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:365-525
               
               
               Cow position:chr25:14849626-14849458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):80, 157

               
               
               Conread position:365-527
               
               
               Cow position:chr25:12223598-12223760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:365-532
               
               
               Cow position:chr25:15552937-15553100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 51

               
               
               Conread position:366-494
               
               
               Cow position:chr25:6781890-6782023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:366-528
               
               
               Cow position:chr25:14949783-14949613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):5, 65

               
               
               Conread position:366-543
               
               
               Cow position:chr25:5922679-5922502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):113, 85

               
               
               Conread position:366-550
               
               
               Cow position:chr25:21547185-21547376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:367-535
               
               
               Cow position:chr25:38987200-38987362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:368-462
               
               
               Cow position:chr25:26174630-26174724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:368-469
               
               
               Cow position:chr25:29335230-29335332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:368-519
               
               
               Cow position:chr25:37683160-37683310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:371-522
               
               
               Cow position:chr25:447870-447716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):81, 145

               
               
               Conread position:371-525
               
               
               Cow position:chr25:8411001-8410839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:372-524
               
               
               Cow position:chr25:10303568-10303720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:372-550
               
               
               Cow position:chr25:15999518-15999333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):81, 63

               
               
               Conread position:374-537
               
               
               Cow position:chr25:17707861-17708012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):152, 5

               
               
               Conread position:377-548
               
               
               Cow position:chr25:21082368-21082190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):83, 170

               
               
               Conread position:379-514
               
               
               Cow position:chr25:22570999-22571142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:381-548
               
               
               Cow position:chr25:13565280-13565119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:382-517
               
               
               Cow position:chr25:10010544-10010411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:383-527
               
               
               Cow position:chr25:18865865-18866005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:383-548
               
               
               Cow position:chr25:30709303-30709129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 167

               
               
               Conread position:383-552
               
               
               Cow position:chr25:7185231-7185052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:383-552
               
               
               Cow position:chr25:34990226-34990059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 48

               
               
               Conread position:384-535
               
               
               Cow position:chr25:17141148-17141308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:385-549
               
               
               Cow position:chr25:20788776-20788614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 137

               
               
               Conread position:386-524
               
               
               Cow position:chr25:4504726-4504587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:387-531
               
               
               Cow position:chr25:16447554-16447417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:388-535
               
               
               Cow position:chr25:7450125-7450263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:389-537
               
               
               Cow position:chr25:28940090-28939936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):65, 148

               
               
               Conread position:394-531
               
               
               Cow position:chr25:13470658-13470511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:399-535
               
               
               Cow position:chr25:7864394-7864535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:408-549
               
               
               Cow position:chr25:14659050-14658907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:409-537
               
               
               Cow position:chr25:32587173-32587045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:409-552
               
               
               Cow position:chr25:6940418-6940269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:410-527
               
               
               Cow position:chr25:22439430-22439307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:452-550
               
               
               Cow position:chr25:7012848-7012946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:84
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:456-551
               
               
               Cow position:chr25:26175358-26175454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):78, 0
Show alignments to all cow chromosomes.