Cow genome map
| Conread name: | Ss1.1-rfbs3918b_e17.5 | 
| Conread position: | 5-220 | 
| Cow position: | chr3:67022212-67022427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 73, 171 | 
| Conread position: | 7-420 | 
| Cow position: | chr3:56697590-56698006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 71, 295 | 
| Conread position: | 12-241 | 
| Cow position: | chr3:68514893-68514674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 66, 91 | 
| Conread position: | 13-269 | 
| Cow position: | chr3:32306983-32307247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 23-225 | 
| Cow position: | chr3:26474824-26475032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 55, 111 | 
| Conread position: | 25-264 | 
| Cow position: | chr3:15662037-15661792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 31, 154 | 
| Conread position: | 25-264 | 
| Cow position: | chr3:18854761-18855003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 21, 42 | 
| Conread position: | 25-434 | 
| Cow position: | chr3:13685919-13686325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 48, 29 | 
| Conread position: | 25-452 | 
| Cow position: | chr3:62826951-62826527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 199, 34 | 
| Conread position: | 25-546 | 
| Cow position: | chr3:7338116-7337591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 545 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 216 | 
| Conread position: | 25-548 | 
| Cow position: | chr3:48852300-48851774 (view UCSC Genome Browser custom track) | 
| Alignm length: | 545 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 91 | 
| Conread position: | 26-220 | 
| Cow position: | chr3:19560452-19560258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 45, 83 | 
| Conread position: | 26-527 | 
| Cow position: | chr3:53221690-53222186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 29 | 
| Conread position: | 27-264 | 
| Cow position: | chr3:56704860-56704636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 191, 27 | 
| Conread position: | 28-458 | 
| Cow position: | chr3:66374994-66375419 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 9 | 
| Conread position: | 29-359 | 
| Cow position: | chr3:364544-364213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 27, 35 | 
| Conread position: | 33-532 | 
| Cow position: | chr3:74611241-74611724 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 39, 32 | 
| Conread position: | 33-535 | 
| Cow position: | chr3:53790868-53790362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 71 | 
| Conread position: | 33-552 | 
| Cow position: | chr3:59392428-59391928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 34 | 
| Conread position: | 36-180 | 
| Cow position: | chr3:76923179-76923025 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 36-229 | 
| Cow position: | chr3:40753835-40754026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 20, 30 | 
| Conread position: | 36-233 | 
| Cow position: | chr3:45333915-45333721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 182, 22 | 
| Conread position: | 36-311 | 
| Cow position: | chr3:51813813-51813543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 22, 67 | 
| Conread position: | 36-409 | 
| Cow position: | chr3:71430531-71430155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 249 | 
| Conread position: | 36-527 | 
| Cow position: | chr3:68881429-68880957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 27 | 
| Conread position: | 36-537 | 
| Cow position: | chr3:73467303-73467809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 184, 38 | 
| Conread position: | 36-546 | 
| Cow position: | chr3:27274225-27274720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 14 | 
| Conread position: | 36-551 | 
| Cow position: | chr3:66885356-66884832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 530 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 30 | 
| Conread position: | 41-412 | 
| Cow position: | chr3:46094523-46094873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 21, 38 | 
| Conread position: | 42-334 | 
| Cow position: | chr3:46161159-46160869 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 36, 116 | 
| Conread position: | 42-400 | 
| Cow position: | chr3:77224809-77225158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 201, 23 | 
| Conread position: | 42-456 | 
| Cow position: | chr3:53538211-53538606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 9, 22 | 
| Conread position: | 42-525 | 
| Cow position: | chr3:39661758-39661282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 176, 43 | 
| Conread position: | 42-552 | 
| Cow position: | chr3:53739506-53738997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 8 | 
| Conread position: | 43-204 | 
| Cow position: | chr3:3884339-3884175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 35, 60 | 
| Conread position: | 43-220 | 
| Cow position: | chr3:34571085-34571263 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 35, 17 | 
| Conread position: | 43-220 | 
| Cow position: | chr3:48605383-48605562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 43-220 | 
| Cow position: | chr3:50329388-50329213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 35, 130 | 
| Conread position: | 43-222 | 
| Cow position: | chr3:59179095-59179273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 43-225 | 
| Cow position: | chr3:35029412-35029228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 35, 107 | 
| Conread position: | 43-234 | 
| Cow position: | chr3:54909249-54909440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 33, 132 | 
| Conread position: | 43-252 | 
| Cow position: | chr3:61323041-61323247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 115, 0 | 
| Conread position: | 43-264 | 
| Cow position: | chr3:66738460-66738686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 36, 60 | 
| Conread position: | 43-265 | 
| Cow position: | chr3:72530870-72531093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 51, 25 | 
| Conread position: | 43-266 | 
| Cow position: | chr3:36174389-36174159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 43-347 | 
| Cow position: | chr3:67044406-67044109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 196, 57 | 
| Conread position: | 43-402 | 
| Cow position: | chr3:59603654-59604011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 35, 114 | 
| Conread position: | 43-423 | 
| Cow position: | chr3:18279745-18279360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 35, 133 | 
| Conread position: | 43-443 | 
| Cow position: | chr3:59798941-59799331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 122 | 
| Conread position: | 43-498 | 
| Cow position: | chr3:15387892-15388367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 226 | 
| Conread position: | 43-527 | 
| Cow position: | chr3:48362770-48363243 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 89 | 
| Conread position: | 43-537 | 
| Cow position: | chr3:12255167-12255635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 36, 97 | 
| Conread position: | 43-544 | 
| Cow position: | chr3:14466017-14465526 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 88 | 
| Conread position: | 44-212 | 
| Cow position: | chr3:2334972-2335140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 35, 58 | 
| Conread position: | 44-216 | 
| Cow position: | chr3:22353832-22354012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 28, 63 | 
| Conread position: | 44-217 | 
| Cow position: | chr3:59344932-59345109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 44-245 | 
| Cow position: | chr3:12323756-12323951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 44-256 | 
| Cow position: | chr3:27553239-27553453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 34, 59 | 
| Conread position: | 44-265 | 
| Cow position: | chr3:34953343-34953565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 33, 7 | 
| Conread position: | 44-266 | 
| Cow position: | chr3:13361303-13361530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 44-266 | 
| Cow position: | chr3:14438133-14437906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 44-266 | 
| Cow position: | chr3:26742017-26741790 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 44-266 | 
| Cow position: | chr3:41206715-41206488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 44-266 | 
| Cow position: | chr3:44927670-44927897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 44-266 | 
| Cow position: | chr3:49907178-49906949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 44-266 | 
| Cow position: | chr3:52225276-52225503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 44-266 | 
| Cow position: | chr3:53879409-53879182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 44-266 | 
| Cow position: | chr3:75265085-75264858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 44-269 | 
| Cow position: | chr3:14261289-14261519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 44-269 | 
| Cow position: | chr3:21626455-21626687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 44-269 | 
| Cow position: | chr3:73001593-73001823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 44-367 | 
| Cow position: | chr3:14889156-14889480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 34, 239 | 
| Conread position: | 44-371 | 
| Cow position: | chr3:31501041-31501359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 57 | 
| Conread position: | 44-397 | 
| Cow position: | chr3:74061324-74061678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 34, 239 | 
| Conread position: | 44-402 | 
| Cow position: | chr3:14923506-14923866 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 34, 233 | 
| Conread position: | 44-419 | 
| Cow position: | chr3:22089594-22089218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 34, 103 | 
| Conread position: | 44-419 | 
| Cow position: | chr3:75727901-75727523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 34, 254 | 
| Conread position: | 44-448 | 
| Cow position: | chr3:35299362-35299754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 125 | 
| Conread position: | 44-450 | 
| Cow position: | chr3:50762807-50763209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 24, 81 | 
| Conread position: | 44-520 | 
| Cow position: | chr3:17222454-17221966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 21 | 
| Conread position: | 44-520 | 
| Cow position: | chr3:20471669-20471218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 22, 41 | 
| Conread position: | 44-524 | 
| Cow position: | chr3:74088473-74088006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 273, 34 | 
| Conread position: | 44-527 | 
| Cow position: | chr3:36570353-36569864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 27 | 
| Conread position: | 44-527 | 
| Cow position: | chr3:50614333-50614797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 183, 24 | 
| Conread position: | 44-532 | 
| Cow position: | chr3:65413585-65413087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 15 | 
| Conread position: | 44-537 | 
| Cow position: | chr3:28908506-28908031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 21 | 
| Conread position: | 44-551 | 
| Cow position: | chr3:31298469-31297959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 529 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 174, 22 | 
| Conread position: | 44-552 | 
| Cow position: | chr3:51033033-51033571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 543 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 59 | 
| Conread position: | 44-552 | 
| Cow position: | chr3:83490764-83491280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 267 | 
| Conread position: | 45-170 | 
| Cow position: | chr3:63688073-63687947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 33, 61 | 
| Conread position: | 45-178 | 
| Cow position: | chr3:63177201-63177335 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 33, 60 | 
| Conread position: | 45-179 | 
| Cow position: | chr3:83437413-83437278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 33, 118 | 
| Conread position: | 45-180 | 
| Cow position: | chr3:76155404-76155537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 33, 55 | 
| Conread position: | 45-194 | 
| Cow position: | chr3:83728181-83728035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 33, 65 | 
| Conread position: | 45-217 | 
| Cow position: | chr3:2431155-2430980 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 45-220 | 
| Cow position: | chr3:4160915-4160738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 45-220 | 
| Cow position: | chr3:32326092-32325915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 45-224 | 
| Cow position: | chr3:20746890-20746716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 33, 125 | 
| Conread position: | 45-225 | 
| Cow position: | chr3:38252684-38252859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 33, 48 | 
| Conread position: | 45-228 | 
| Cow position: | chr3:20137164-20136979 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 45-229 | 
| Cow position: | chr3:41157604-41157415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 45-229 | 
| Cow position: | chr3:44535071-44534896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 45, 24 | 
| Conread position: | 45-238 | 
| Cow position: | chr3:11728393-11728195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 45-251 | 
| Cow position: | chr3:55301061-55300860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 34, 58 | 
| Conread position: | 45-253 | 
| Cow position: | chr3:53407564-53407358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 33, 156 | 
| Conread position: | 45-256 | 
| Cow position: | chr3:31903419-31903214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 33, 57 | 
| Conread position: | 45-258 | 
| Cow position: | chr3:37982431-37982219 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 33, 118 | 
| Conread position: | 45-260 | 
| Cow position: | chr3:8557092-8556881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 26, 106 | 
| Conread position: | 45-262 | 
| Cow position: | chr3:22872363-22872141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 33, 118 | 
| Conread position: | 45-266 | 
| Cow position: | chr3:46683691-46683916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 33, 86 | 
| Conread position: | 45-266 | 
| Cow position: | chr3:81034088-81033861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 45-284 | 
| Cow position: | chr3:73305799-73306031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 33, 128 | 
| Conread position: | 45-299 | 
| Cow position: | chr3:58206762-58206507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 33, 86 | 
| Conread position: | 45-312 | 
| Cow position: | chr3:66978532-66978792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 34, 129 | 
| Conread position: | 45-339 | 
| Cow position: | chr3:35283396-35283110 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 184, 14 | 
| Conread position: | 45-349 | 
| Cow position: | chr3:78782663-78782947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 34, 78 | 
| Conread position: | 45-358 | 
| Cow position: | chr3:48269552-48269861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 188 | 
| Conread position: | 45-368 | 
| Cow position: | chr3:62542003-62542320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 33, 128 | 
| Conread position: | 45-412 | 
| Cow position: | chr3:15685221-15684870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 68 | 
| Conread position: | 45-417 | 
| Cow position: | chr3:66610149-66609787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 109 | 
| Conread position: | 45-423 | 
| Cow position: | chr3:47520065-47520444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 33, 230 | 
| Conread position: | 45-446 | 
| Cow position: | chr3:38346892-38347276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 0 | 
| Conread position: | 45-448 | 
| Cow position: | chr3:49382641-49383037 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 155 | 
| Conread position: | 45-453 | 
| Cow position: | chr3:49650069-49650481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 58 | 
| Conread position: | 45-454 | 
| Cow position: | chr3:49230704-49231093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 150, 39 | 
| Conread position: | 45-455 | 
| Cow position: | chr3:70566049-70565642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 120 | 
| Conread position: | 45-461 | 
| Cow position: | chr3:12712234-12711814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 253 | 
| Conread position: | 45-461 | 
| Cow position: | chr3:72169032-72168629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 34, 152 | 
| Conread position: | 45-462 | 
| Cow position: | chr3:53593010-53592587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 11 | 
| Conread position: | 45-500 | 
| Cow position: | chr3:67704225-67704687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 143 | 
| Conread position: | 45-504 | 
| Cow position: | chr3:72390772-72391238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 45 | 
| Conread position: | 45-524 | 
| Cow position: | chr3:59608199-59608649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 33, 20 | 
| Conread position: | 45-527 | 
| Cow position: | chr3:4461800-4461316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 128 | 
| Conread position: | 45-527 | 
| Cow position: | chr3:15655455-15654995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 23 | 
| Conread position: | 45-537 | 
| Cow position: | chr3:54782322-54781810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 20 | 
| Conread position: | 45-541 | 
| Cow position: | chr3:13353049-13353552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 59 | 
| Conread position: | 45-547 | 
| Cow position: | chr3:64536853-64536395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 22, 58 | 
| Conread position: | 45-548 | 
| Cow position: | chr3:30179773-30180275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 127 | 
| Conread position: | 45-552 | 
| Cow position: | chr3:48370820-48371323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 33, 255 | 
| Conread position: | 46-261 | 
| Cow position: | chr3:18763584-18763803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 35, 117 | 
| Conread position: | 46-347 | 
| Cow position: | chr3:77496507-77496816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 265 | 
| Conread position: | 46-350 | 
| Cow position: | chr3:57554157-57553858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 107 | 
| Conread position: | 46-369 | 
| Cow position: | chr3:8147973-8147658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 32, 61 | 
| Conread position: | 46-403 | 
| Cow position: | chr3:19708408-19708065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 32, 27 | 
| Conread position: | 46-433 | 
| Cow position: | chr3:57457497-57457880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 32, 77 | 
| Conread position: | 46-527 | 
| Cow position: | chr3:59366238-59366708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 9 | 
| Conread position: | 47-269 | 
| Cow position: | chr3:62304918-62305145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 47-449 | 
| Cow position: | chr3:66708383-66707978 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 9 | 
| Conread position: | 48-171 | 
| Cow position: | chr3:2851398-2851280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 48-220 | 
| Cow position: | chr3:18917792-18917970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 48-238 | 
| Cow position: | chr3:84419090-84418900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 31, 55 | 
| Conread position: | 48-246 | 
| Cow position: | chr3:50099185-50099379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 31, 139 | 
| Conread position: | 48-448 | 
| Cow position: | chr3:6689686-6690088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 11 | 
| Conread position: | 48-449 | 
| Cow position: | chr3:59588211-59588599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 30, 115 | 
| Conread position: | 48-551 | 
| Cow position: | chr3:55970199-55970715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 53 | 
| Conread position: | 49-161 | 
| Cow position: | chr3:522418-522532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 116 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 30, 58 | 
| Conread position: | 49-167 | 
| Cow position: | chr3:26981044-26981164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-167 | 
| Cow position: | chr3:69766543-69766424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 30, 54 | 
| Conread position: | 49-171 | 
| Cow position: | chr3:18700505-18700381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-172 | 
| Cow position: | chr3:6799309-6799182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 49-175 | 
| Cow position: | chr3:3086292-3086420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-185 | 
| Cow position: | chr3:40630060-40629923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 20, 119 | 
| Conread position: | 49-187 | 
| Cow position: | chr3:29172076-29172212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 29, 124 | 
| Conread position: | 49-191 | 
| Cow position: | chr3:55110150-55110011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 29, 54 | 
| Conread position: | 49-194 | 
| Cow position: | chr3:52486975-52487118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 148 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 28, 117 | 
| Conread position: | 49-198 | 
| Cow position: | chr3:17331461-17331612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 29, 149 | 
| Conread position: | 49-200 | 
| Cow position: | chr3:66014098-66014251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 28, 147 | 
| Conread position: | 49-208 | 
| Cow position: | chr3:41053507-41053663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 29, 54 | 
| Conread position: | 49-212 | 
| Cow position: | chr3:76000097-75999932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-216 | 
| Cow position: | chr3:18887272-18887443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-216 | 
| Cow position: | chr3:22919382-22919551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-217 | 
| Cow position: | chr3:6433988-6434156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 30, 107 | 
| Conread position: | 49-217 | 
| Cow position: | chr3:9435655-9435825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-217 | 
| Cow position: | chr3:58060924-58060754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-219 | 
| Cow position: | chr3:2628011-2628179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 30, 124 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:3776727-3776900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 29, 130 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:4040328-4040497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 29, 40 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:4864824-4864651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:6402990-6403158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 29, 124 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:6442928-6443101 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:7360127-7359954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:8159648-8159815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 78 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:8240621-8240793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:10215318-10215151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 19, 122 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:10244521-10244694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:14864733-14864902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 140 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:18179443-18179614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 29, 70 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:18715791-18715618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:20225849-20226018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 29, 97 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:21100664-21100834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 16, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:27242826-27242657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 30, 60 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:28357906-28357733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:30531647-30531820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:34525951-34525779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 29, 54 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:37580631-37580452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:38870427-38870596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 124 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:39857836-39858008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 37 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:40568332-40568161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 29, 59 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:40827547-40827720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:49415990-49415817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 28, 83 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:50922259-50922431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 29, 156 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:56329050-56329223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:57479636-57479464 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 29, 16 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:59865341-59865513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 29, 78 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:64294372-64294543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:69945246-69945073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 29, 76 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:70450040-70450213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:73211677-73211850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:78110806-78110976 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 25, 48 | 
| Conread position: | 49-220 | 
| Cow position: | chr3:81064286-81064458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 74 | 
| Conread position: | 49-221 | 
| Cow position: | chr3:40284487-40284313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-223 | 
| Cow position: | chr3:41818395-41818227 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 49-225 | 
| Cow position: | chr3:16115264-16115432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 16, 46 | 
| Conread position: | 49-225 | 
| Cow position: | chr3:48811292-48811116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 30, 73 | 
| Conread position: | 49-225 | 
| Cow position: | chr3:70840452-70840278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 30, 7 | 
| Conread position: | 49-225 | 
| Cow position: | chr3:73812531-73812707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 19, 77 | 
| Conread position: | 49-228 | 
| Cow position: | chr3:24823667-24823847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 30, 175 | 
| Conread position: | 49-229 | 
| Cow position: | chr3:15571350-15571525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 29, 106 | 
| Conread position: | 49-229 | 
| Cow position: | chr3:55107415-55107234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 49-229 | 
| Cow position: | chr3:76091981-76092159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 49-231 | 
| Cow position: | chr3:78242035-78242217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 19, 10 | 
| Conread position: | 49-232 | 
| Cow position: | chr3:27453696-27453522 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 169, 53 | 
| Conread position: | 49-233 | 
| Cow position: | chr3:945830-946009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 54 | 
| Conread position: | 49-233 | 
| Cow position: | chr3:51315181-51315362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 169, 30 | 
| Conread position: | 49-234 | 
| Cow position: | chr3:22954156-22953973 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 30, 65 | 
| Conread position: | 49-234 | 
| Cow position: | chr3:68291259-68291444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 29, 103 | 
| Conread position: | 49-237 | 
| Cow position: | chr3:8901109-8901300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 20, 78 | 
| Conread position: | 49-238 | 
| Cow position: | chr3:16380884-16380691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-238 | 
| Cow position: | chr3:65273706-65273514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 29, 98 | 
| Conread position: | 49-241 | 
| Cow position: | chr3:5495804-5495610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 29, 128 | 
| Conread position: | 49-241 | 
| Cow position: | chr3:71488626-71488433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 29, 125 | 
| Conread position: | 49-242 | 
| Cow position: | chr3:20562016-20561821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 30, 98 | 
| Conread position: | 49-246 | 
| Cow position: | chr3:82618084-82618278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 29, 87 | 
| Conread position: | 49-247 | 
| Cow position: | chr3:48900809-48900612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 29, 83 | 
| Conread position: | 49-248 | 
| Cow position: | chr3:58951314-58951513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 29, 109 | 
| Conread position: | 49-250 | 
| Cow position: | chr3:57834777-57834562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 15, 56 | 
| Conread position: | 49-250 | 
| Cow position: | chr3:58158771-58158569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 29, 42 | 
| Conread position: | 49-250 | 
| Cow position: | chr3:75143339-75143137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 29, 124 | 
| Conread position: | 49-251 | 
| Cow position: | chr3:43245813-43245607 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 16, 180 | 
| Conread position: | 49-252 | 
| Cow position: | chr3:26669413-26669206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 17, 11 | 
| Conread position: | 49-252 | 
| Cow position: | chr3:78546406-78546197 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 33, 126 | 
| Conread position: | 49-254 | 
| Cow position: | chr3:14280537-14280745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 29, 111 | 
| Conread position: | 49-254 | 
| Cow position: | chr3:19711622-19711414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 29, 87 | 
| Conread position: | 49-254 | 
| Cow position: | chr3:79905219-79905020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 29, 55 | 
| Conread position: | 49-256 | 
| Cow position: | chr3:51014143-51013934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 29, 78 | 
| Conread position: | 49-259 | 
| Cow position: | chr3:72604043-72604252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 30, 184 | 
| Conread position: | 49-262 | 
| Cow position: | chr3:53222955-53222733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 29, 130 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:6265200-6265420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:6853810-6853597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 16, 57 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:7475727-7475513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 169, 23 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:8716940-8717160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 29, 54 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:16004293-16004082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 29, 110 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:20129634-20129853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 29, 115 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:24350823-24351032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 169, 99 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:32619150-32618930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 29, 84 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:40689261-40689045 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 60 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:45312745-45312958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 29, 56 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:51012840-51012624 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 29, 124 | 
| Conread position: | 49-264 | 
| Cow position: | chr3:65020025-65020244 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 29, 145 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:11026619-11026830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 29, 107 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:14717507-14717719 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 29, 54 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:16619892-16619671 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:18863299-18863520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 29, 83 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:33633193-33632983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 19, 38 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:36657077-36656860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 29, 123 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:37894685-37894906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 72 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:42461393-42461610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 29, 122 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:42976454-42976235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 29, 214 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:58953991-58954207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 19, 55 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:64198174-64198394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:72174154-72173933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 49-265 | 
| Cow position: | chr3:82473744-82473967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 29, 146 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:11596-11818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:1034949-1035171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 29, 83 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:5475395-5475618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:18111291-18111069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:19234635-19234857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:19884315-19884536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 78 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:22632631-22632853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:28434715-28434493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:28675682-28675899 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 30, 114 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:31147335-31147557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:35975412-35975197 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 29, 138 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:36670728-36670511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 134 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:44335248-44335468 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:54808852-54809070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 29, 114 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:61678384-61678604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 29, 131 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:62623940-62623739 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 39 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:69345124-69344907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 29, 11 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:69486398-69486620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-266 | 
| Cow position: | chr3:78472129-78471908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-268 | 
| Cow position: | chr3:8753157-8753377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 29, 55 | 
| Conread position: | 49-268 | 
| Cow position: | chr3:15955237-15955462 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-268 | 
| Cow position: | chr3:31023178-31023402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 83 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:2573389-2573614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:6885007-6885232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:14680943-14681168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:41396229-41396454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:45098101-45098326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:46261231-46261456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:47720108-47720333 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:48043141-48043366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:56335820-56335604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 29, 164 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:70731161-70731386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 49-269 | 
| Cow position: | chr3:79668972-79669197 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 29, 75 | 
| Conread position: | 49-316 | 
| Cow position: | chr3:7408176-7408447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 29, 254 | 
| Conread position: | 49-332 | 
| Cow position: | chr3:61191224-61190952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 28, 109 | 
| Conread position: | 49-334 | 
| Cow position: | chr3:78200960-78201242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 234 | 
| Conread position: | 49-335 | 
| Cow position: | chr3:49454925-49455213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 29, 136 | 
| Conread position: | 49-339 | 
| Cow position: | chr3:7858045-7858352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 30, 272 | 
| Conread position: | 49-345 | 
| Cow position: | chr3:47284533-47284821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 21, 31 | 
| Conread position: | 49-348 | 
| Cow position: | chr3:39554622-39554342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 89, 52 | 
| Conread position: | 49-349 | 
| Cow position: | chr3:59267778-59268078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 29, 11 | 
| Conread position: | 49-349 | 
| Cow position: | chr3:82657392-82657098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 16, 111 | 
| Conread position: | 49-351 | 
| Cow position: | chr3:12932857-12933160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-351 | 
| Cow position: | chr3:20862923-20863226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-351 | 
| Cow position: | chr3:36126346-36126649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-351 | 
| Cow position: | chr3:37662842-37663145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 28, 227 | 
| Conread position: | 49-356 | 
| Cow position: | chr3:64877373-64877680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 29, 252 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:859428-859738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:1438424-1438734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:6024690-6025000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:7696712-7697022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 29, 242 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:8331138-8331448 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 253 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:27143330-27143640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 30, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:30753444-30753754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:36417601-36417911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:45749116-45749426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:50217850-50218160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:51666578-51666888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:51857712-51858022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 29, 72 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:55246311-55246621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:61200651-61200961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-358 | 
| Cow position: | chr3:83479269-83479579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-362 | 
| Cow position: | chr3:2922491-2922804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 29, 226 | 
| Conread position: | 49-362 | 
| Cow position: | chr3:7767775-7768088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-362 | 
| Cow position: | chr3:28933765-28934078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-362 | 
| Cow position: | chr3:36728639-36728952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-362 | 
| Cow position: | chr3:49769007-49769318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 253 | 
| Conread position: | 49-362 | 
| Cow position: | chr3:70871215-70871528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-364 | 
| Cow position: | chr3:36014019-36014335 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-364 | 
| Cow position: | chr3:37280774-37281090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-364 | 
| Cow position: | chr3:49948651-49948967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 226 | 
| Conread position: | 49-364 | 
| Cow position: | chr3:50960075-50960391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-364 | 
| Cow position: | chr3:67264649-67264965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 253 | 
| Conread position: | 49-367 | 
| Cow position: | chr3:2833677-2833361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-367 | 
| Cow position: | chr3:18933132-18933451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 29, 234 | 
| Conread position: | 49-367 | 
| Cow position: | chr3:24166257-24166570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 170, 23 | 
| Conread position: | 49-367 | 
| Cow position: | chr3:34016435-34016753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 29, 82 | 
| Conread position: | 49-367 | 
| Cow position: | chr3:39921087-39920768 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 29, 234 | 
| Conread position: | 49-367 | 
| Cow position: | chr3:54495756-54496075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 29, 226 | 
| Conread position: | 49-368 | 
| Cow position: | chr3:20796154-20796473 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-368 | 
| Cow position: | chr3:40345093-40345417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 29, 114 | 
| Conread position: | 49-369 | 
| Cow position: | chr3:9843271-9843597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 60 | 
| Conread position: | 49-369 | 
| Cow position: | chr3:80082124-80081804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 30, 70 | 
| Conread position: | 49-372 | 
| Cow position: | chr3:2075642-2075966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 29, 253 | 
| Conread position: | 49-372 | 
| Cow position: | chr3:22490483-22490806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 29, 233 | 
| Conread position: | 49-372 | 
| Cow position: | chr3:30352143-30352467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 29, 72 | 
| Conread position: | 49-373 | 
| Cow position: | chr3:2364398-2364073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 234 | 
| Conread position: | 49-373 | 
| Cow position: | chr3:21155298-21155622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 29, 237 | 
| Conread position: | 49-373 | 
| Cow position: | chr3:48530331-48530646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 123 | 
| Conread position: | 49-377 | 
| Cow position: | chr3:69962016-69961701 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 178, 122 | 
| Conread position: | 49-386 | 
| Cow position: | chr3:23417172-23416863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 21, 59 | 
| Conread position: | 49-390 | 
| Cow position: | chr3:21341270-21340931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 42 | 
| Conread position: | 49-390 | 
| Cow position: | chr3:29807156-29807493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 144 | 
| Conread position: | 49-391 | 
| Cow position: | chr3:31907449-31907112 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 37, 19 | 
| Conread position: | 49-393 | 
| Cow position: | chr3:5851234-5850896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 54 | 
| Conread position: | 49-393 | 
| Cow position: | chr3:43528544-43528199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 30, 114 | 
| Conread position: | 49-393 | 
| Cow position: | chr3:61171809-61171475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 28, 41 | 
| Conread position: | 49-396 | 
| Cow position: | chr3:45293931-45294279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 253 | 
| Conread position: | 49-397 | 
| Cow position: | chr3:303083-303431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 103 | 
| Conread position: | 49-397 | 
| Cow position: | chr3:6838893-6839242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 29, 226 | 
| Conread position: | 49-397 | 
| Cow position: | chr3:36595548-36595897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 234 | 
| Conread position: | 49-397 | 
| Cow position: | chr3:40049747-40050096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-397 | 
| Cow position: | chr3:46128277-46127928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 28, 223 | 
| Conread position: | 49-398 | 
| Cow position: | chr3:11418408-11418758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-398 | 
| Cow position: | chr3:28472220-28472570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 30, 227 | 
| Conread position: | 49-398 | 
| Cow position: | chr3:30816029-30816379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-398 | 
| Cow position: | chr3:49287023-49287373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 191 | 
| Conread position: | 49-398 | 
| Cow position: | chr3:58337161-58337511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-402 | 
| Cow position: | chr3:15417328-15417681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-402 | 
| Cow position: | chr3:77753788-77754138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 29, 226 | 
| Conread position: | 49-403 | 
| Cow position: | chr3:11385366-11385725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 29, 261 | 
| Conread position: | 49-403 | 
| Cow position: | chr3:46350345-46350714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 264 | 
| Conread position: | 49-405 | 
| Cow position: | chr3:23476694-23477033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 140, 52 | 
| Conread position: | 49-411 | 
| Cow position: | chr3:24549139-24548786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 29, 142 | 
| Conread position: | 49-411 | 
| Cow position: | chr3:27289630-27289991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 131 | 
| Conread position: | 49-411 | 
| Cow position: | chr3:55117276-55116926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 170, 17 | 
| Conread position: | 49-412 | 
| Cow position: | chr3:31047249-31046900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 70 | 
| Conread position: | 49-412 | 
| Cow position: | chr3:50462035-50462388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 20, 13 | 
| Conread position: | 49-412 | 
| Cow position: | chr3:72018816-72019168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 29, 44 | 
| Conread position: | 49-412 | 
| Cow position: | chr3:72131608-72131246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 17, 122 | 
| Conread position: | 49-418 | 
| Cow position: | chr3:52147983-52147593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 35 | 
| Conread position: | 49-434 | 
| Cow position: | chr3:14830397-14830019 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 108 | 
| Conread position: | 49-434 | 
| Cow position: | chr3:64375858-64375475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 38, 29 | 
| Conread position: | 49-440 | 
| Cow position: | chr3:61839984-61840355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 107 | 
| Conread position: | 49-440 | 
| Cow position: | chr3:72675780-72676171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 249 | 
| Conread position: | 49-446 | 
| Cow position: | chr3:26920588-26920996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 65 | 
| Conread position: | 49-446 | 
| Cow position: | chr3:59101528-59101913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 111 | 
| Conread position: | 49-448 | 
| Cow position: | chr3:79292528-79292916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 19 | 
| Conread position: | 49-452 | 
| Cow position: | chr3:14626457-14626058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 55 | 
| Conread position: | 49-452 | 
| Cow position: | chr3:37599723-37599336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 114 | 
| Conread position: | 49-452 | 
| Cow position: | chr3:83474442-83474837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 47 | 
| Conread position: | 49-453 | 
| Cow position: | chr3:26219368-26218960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 58 | 
| Conread position: | 49-453 | 
| Cow position: | chr3:53573057-53572659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 126 | 
| Conread position: | 49-453 | 
| Cow position: | chr3:80071810-80072223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 54 | 
| Conread position: | 49-455 | 
| Cow position: | chr3:26973774-26973345 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 30, 310 | 
| Conread position: | 49-455 | 
| Cow position: | chr3:55272347-55271950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 52 | 
| Conread position: | 49-459 | 
| Cow position: | chr3:36672312-36671896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 254 | 
| Conread position: | 49-460 | 
| Cow position: | chr3:52017453-52017871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 29, 44 | 
| Conread position: | 49-461 | 
| Cow position: | chr3:31206565-31206977 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 126 | 
| Conread position: | 49-462 | 
| Cow position: | chr3:35852776-35852368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 56 | 
| Conread position: | 49-462 | 
| Cow position: | chr3:46900888-46901300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 54 | 
| Conread position: | 49-462 | 
| Cow position: | chr3:80053841-80053442 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 107 | 
| Conread position: | 49-469 | 
| Cow position: | chr3:53112861-53113284 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 248 | 
| Conread position: | 49-472 | 
| Cow position: | chr3:5101067-5100659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 63 | 
| Conread position: | 49-475 | 
| Cow position: | chr3:115914-116306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 28 | 
| Conread position: | 49-475 | 
| Cow position: | chr3:82460876-82461298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 108 | 
| Conread position: | 49-480 | 
| Cow position: | chr3:42423638-42423207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 122 | 
| Conread position: | 49-481 | 
| Cow position: | chr3:59691597-59692012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 114 | 
| Conread position: | 49-508 | 
| Cow position: | chr3:26892352-26892809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-512 | 
| Cow position: | chr3:16656775-16656326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 30, 71 | 
| Conread position: | 49-513 | 
| Cow position: | chr3:11987024-11987488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 16 | 
| Conread position: | 49-516 | 
| Cow position: | chr3:2035991-2036467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 127 | 
| Conread position: | 49-517 | 
| Cow position: | chr3:57577392-57577860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 44 | 
| Conread position: | 49-522 | 
| Cow position: | chr3:29891724-29891237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 92 | 
| Conread position: | 49-523 | 
| Cow position: | chr3:57754787-57754305 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 46 | 
| Conread position: | 49-524 | 
| Cow position: | chr3:26903810-26904270 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 125 | 
| Conread position: | 49-524 | 
| Cow position: | chr3:53150019-53150504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 120 | 
| Conread position: | 49-524 | 
| Cow position: | chr3:59451288-59451769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 57 | 
| Conread position: | 49-524 | 
| Cow position: | chr3:60597246-60597708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 43 | 
| Conread position: | 49-524 | 
| Cow position: | chr3:70895739-70896210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 221 | 
| Conread position: | 49-525 | 
| Cow position: | chr3:31056309-31055841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 29, 230 | 
| Conread position: | 49-525 | 
| Cow position: | chr3:34096256-34095800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 25 | 
| Conread position: | 49-525 | 
| Cow position: | chr3:48241314-48241778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 124 | 
| Conread position: | 49-525 | 
| Cow position: | chr3:59611023-59610547 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 60 | 
| Conread position: | 49-525 | 
| Cow position: | chr3:67929573-67929087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 79 | 
| Conread position: | 49-525 | 
| Cow position: | chr3:72776933-72777405 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 240 | 
| Conread position: | 49-526 | 
| Cow position: | chr3:79094373-79093888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 25 | 
| Conread position: | 49-527 | 
| Cow position: | chr3:18459827-18459363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 124 | 
| Conread position: | 49-527 | 
| Cow position: | chr3:20256886-20257394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 396 | 
| Conread position: | 49-527 | 
| Cow position: | chr3:35884260-35883758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 29, 107 | 
| Conread position: | 49-527 | 
| Cow position: | chr3:68303021-68303492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 198 | 
| Conread position: | 49-527 | 
| Cow position: | chr3:71231099-71231572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 111 | 
| Conread position: | 49-532 | 
| Cow position: | chr3:24852894-24852410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 231 | 
| Conread position: | 49-532 | 
| Cow position: | chr3:49119339-49118851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 256 | 
| Conread position: | 49-532 | 
| Cow position: | chr3:49327639-49328113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 63 | 
| Conread position: | 49-532 | 
| Cow position: | chr3:71246728-71247193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 56 | 
| Conread position: | 49-532 | 
| Cow position: | chr3:79884793-79884301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 55 | 
| Conread position: | 49-536 | 
| Cow position: | chr3:5365378-5365849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 99 | 
| Conread position: | 49-536 | 
| Cow position: | chr3:65058395-65058882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 54 | 
| Conread position: | 49-537 | 
| Cow position: | chr3:2397090-2396611 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 364 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 235 | 
| Conread position: | 49-537 | 
| Cow position: | chr3:2674722-2675214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 126 | 
| Conread position: | 49-537 | 
| Cow position: | chr3:13899760-13899272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 253 | 
| Conread position: | 49-537 | 
| Cow position: | chr3:14552571-14553054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 126 | 
| Conread position: | 49-539 | 
| Cow position: | chr3:59473809-59474306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 33 | 
| Conread position: | 49-540 | 
| Cow position: | chr3:53384590-53384095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 364 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 111 | 
| Conread position: | 49-541 | 
| Cow position: | chr3:45881602-45882087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 127 | 
| Conread position: | 49-541 | 
| Cow position: | chr3:65968848-65969363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 54 | 
| Conread position: | 49-543 | 
| Cow position: | chr3:20663845-20663353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 30, 244 | 
| Conread position: | 49-544 | 
| Cow position: | chr3:23169377-23168876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 216 | 
| Conread position: | 49-544 | 
| Cow position: | chr3:80973046-80973542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 196 | 
| Conread position: | 49-546 | 
| Cow position: | chr3:14724990-14725505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 226 | 
| Conread position: | 49-546 | 
| Cow position: | chr3:18393691-18393210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 114 | 
| Conread position: | 49-546 | 
| Cow position: | chr3:29887731-29887246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 395 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 109 | 
| Conread position: | 49-547 | 
| Cow position: | chr3:174627-175137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 163, 7 | 
| Conread position: | 49-547 | 
| Cow position: | chr3:53588699-53588213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 112 | 
| Conread position: | 49-548 | 
| Cow position: | chr3:2007967-2008471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 30, 43 | 
| Conread position: | 49-548 | 
| Cow position: | chr3:48252590-48253072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 64 | 
| Conread position: | 49-548 | 
| Cow position: | chr3:54903266-54903762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 40 | 
| Conread position: | 49-548 | 
| Cow position: | chr3:64716716-64717192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 57 | 
| Conread position: | 49-548 | 
| Cow position: | chr3:76172969-76172492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 83 | 
| Conread position: | 49-548 | 
| Cow position: | chr3:79220542-79221046 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 28, 125 | 
| Conread position: | 49-549 | 
| Cow position: | chr3:210015-210521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 523 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 117 | 
| Conread position: | 49-549 | 
| Cow position: | chr3:16547369-16547864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 127 | 
| Conread position: | 49-549 | 
| Cow position: | chr3:18066827-18067324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 125 | 
| Conread position: | 49-550 | 
| Cow position: | chr3:15954384-15953887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 135 | 
| Conread position: | 49-550 | 
| Cow position: | chr3:21302738-21302247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 110 | 
| Conread position: | 49-550 | 
| Cow position: | chr3:50768372-50768877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 54 | 
| Conread position: | 49-551 | 
| Cow position: | chr3:2024877-2025402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 143 | 
| Conread position: | 49-551 | 
| Cow position: | chr3:59604564-59605040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 57 | 
| Conread position: | 49-551 | 
| Cow position: | chr3:68146134-68145657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 30 | 
| Conread position: | 49-552 | 
| Cow position: | chr3:23735410-23734893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 60 | 
| Conread position: | 49-552 | 
| Cow position: | chr3:31419389-31419894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 17, 130 | 
| Conread position: | 49-552 | 
| Cow position: | chr3:44352423-44352921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 29, 227 | 
| Conread position: | 49-552 | 
| Cow position: | chr3:68878017-68877518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 28, 88 | 
| Conread position: | 49-552 | 
| Cow position: | chr3:71497453-71496928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 533 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 148 | 
| Conread position: | 49-552 | 
| Cow position: | chr3:79592195-79591693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 9 | 
| Conread position: | 49-552 | 
| Cow position: | chr3:79902196-79902694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 127 | 
| Conread position: | 50-209 | 
| Cow position: | chr3:10411053-10410891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 50-217 | 
| Cow position: | chr3:15530496-15530660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 29, 74 | 
| Conread position: | 50-219 | 
| Cow position: | chr3:51491158-51491327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 28, 92 | 
| Conread position: | 50-220 | 
| Cow position: | chr3:11277020-11276855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 29, 53 | 
| Conread position: | 50-220 | 
| Cow position: | chr3:28635035-28634863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 50-220 | 
| Cow position: | chr3:32363879-32363706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 50-220 | 
| Cow position: | chr3:60092888-60092717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 28, 10 | 
| Conread position: | 50-220 | 
| Cow position: | chr3:66846465-66846304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 28, 44 | 
| Conread position: | 50-222 | 
| Cow position: | chr3:69207424-69207258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 50-226 | 
| Cow position: | chr3:11378541-11378720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 50-227 | 
| Cow position: | chr3:62824789-62824615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 30, 115 | 
| Conread position: | 50-229 | 
| Cow position: | chr3:40231623-40231804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 50-229 | 
| Cow position: | chr3:44254741-44254555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 50-241 | 
| Cow position: | chr3:49541068-49540876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 28, 73 | 
| Conread position: | 50-253 | 
| Cow position: | chr3:24639284-24639490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 28, 55 | 
| Conread position: | 50-256 | 
| Cow position: | chr3:28928424-28928213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 26, 137 | 
| Conread position: | 50-256 | 
| Cow position: | chr3:62611608-62611806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 168, 122 | 
| Conread position: | 50-264 | 
| Cow position: | chr3:65771620-65771400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 50-266 | 
| Cow position: | chr3:27285919-27286142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 50-266 | 
| Cow position: | chr3:40194733-40194954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 50-269 | 
| Cow position: | chr3:47106782-47107006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 50-299 | 
| Cow position: | chr3:4223009-4223256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 28, 111 | 
| Conread position: | 50-311 | 
| Cow position: | chr3:3301820-3302083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 27, 231 | 
| Conread position: | 50-334 | 
| Cow position: | chr3:13118041-13118316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 16, 45 | 
| Conread position: | 50-342 | 
| Cow position: | chr3:67161626-67161926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 28, 53 | 
| Conread position: | 50-349 | 
| Cow position: | chr3:41367289-41366991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 53 | 
| Conread position: | 50-352 | 
| Cow position: | chr3:30358940-30358641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 29, 126 | 
| Conread position: | 50-358 | 
| Cow position: | chr3:3618663-3618972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 28, 226 | 
| Conread position: | 50-362 | 
| Cow position: | chr3:49975667-49975355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 28, 226 | 
| Conread position: | 50-367 | 
| Cow position: | chr3:18874823-18874506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 28, 226 | 
| Conread position: | 50-367 | 
| Cow position: | chr3:19797240-19796922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 28, 82 | 
| Conread position: | 50-368 | 
| Cow position: | chr3:6078641-6078322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 28, 250 | 
| Conread position: | 50-369 | 
| Cow position: | chr3:69849808-69849498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 113 | 
| Conread position: | 50-372 | 
| Cow position: | chr3:13248158-13247839 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 28, 68 | 
| Conread position: | 50-382 | 
| Cow position: | chr3:45523959-45524289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 31, 9 | 
| Conread position: | 50-390 | 
| Cow position: | chr3:13513040-13512720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 28, 14 | 
| Conread position: | 50-398 | 
| Cow position: | chr3:32769674-32770024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 31, 227 | 
| Conread position: | 50-399 | 
| Cow position: | chr3:3836741-3836389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 28, 206 | 
| Conread position: | 50-404 | 
| Cow position: | chr3:42177854-42178197 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 28, 53 | 
| Conread position: | 50-411 | 
| Cow position: | chr3:25690483-25690844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 6 | 
| Conread position: | 50-411 | 
| Cow position: | chr3:61857190-61857557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 242 | 
| Conread position: | 50-415 | 
| Cow position: | chr3:65800289-65800640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 47 | 
| Conread position: | 50-420 | 
| Cow position: | chr3:46506634-46507010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 28, 53 | 
| Conread position: | 50-420 | 
| Cow position: | chr3:62321441-62321074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 28, 57 | 
| Conread position: | 50-434 | 
| Cow position: | chr3:12286930-12287296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 28, 10 | 
| Conread position: | 50-439 | 
| Cow position: | chr3:58969199-58968824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 30 | 
| Conread position: | 50-446 | 
| Cow position: | chr3:59630806-59630427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 124 | 
| Conread position: | 50-451 | 
| Cow position: | chr3:66292480-66292085 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 18 | 
| Conread position: | 50-515 | 
| Cow position: | chr3:49461243-49460764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 237 | 
| Conread position: | 50-517 | 
| Cow position: | chr3:59001051-59000599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 53 | 
| Conread position: | 50-522 | 
| Cow position: | chr3:49678816-49679303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 130 | 
| Conread position: | 50-527 | 
| Cow position: | chr3:21112927-21112468 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 28, 95 | 
| Conread position: | 50-527 | 
| Cow position: | chr3:69751007-69750561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 112 | 
| Conread position: | 50-527 | 
| Cow position: | chr3:70675911-70676405 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 166 | 
| Conread position: | 50-533 | 
| Cow position: | chr3:66975555-66975067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 274 | 
| Conread position: | 50-535 | 
| Cow position: | chr3:2506785-2506294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 41 | 
| Conread position: | 50-535 | 
| Cow position: | chr3:18184762-18185263 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 125 | 
| Conread position: | 50-535 | 
| Cow position: | chr3:39066027-39066509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 37 | 
| Conread position: | 50-552 | 
| Cow position: | chr3:59648957-59649453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 169, 29 | 
| Conread position: | 51-152 | 
| Cow position: | chr3:55319161-55319264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 104 | 
| Alignm identity: | 87 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 51-212 | 
| Cow position: | chr3:11447696-11447858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 142, 23 | 
| Conread position: | 51-220 | 
| Cow position: | chr3:62272191-62272023 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 17, 116 | 
| Conread position: | 51-223 | 
| Cow position: | chr3:62233568-62233397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 17, 116 | 
| Conread position: | 51-234 | 
| Cow position: | chr3:1498567-1498749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 173, 0 | 
| Conread position: | 51-234 | 
| Cow position: | chr3:74849343-74849161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 28, 52 | 
| Conread position: | 51-246 | 
| Cow position: | chr3:12670998-12670806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 27, 123 | 
| Conread position: | 51-264 | 
| Cow position: | chr3:11640129-11640341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 27, 112 | 
| Conread position: | 51-264 | 
| Cow position: | chr3:81939949-81940164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 170, 15 | 
| Conread position: | 51-265 | 
| Cow position: | chr3:83934209-83934419 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 27, 72 | 
| Conread position: | 51-266 | 
| Cow position: | chr3:11333619-11333401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 144, 23 | 
| Conread position: | 51-269 | 
| Cow position: | chr3:27609827-27610050 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 27, 68 | 
| Conread position: | 51-299 | 
| Cow position: | chr3:15081044-15080803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 27, 121 | 
| Conread position: | 51-314 | 
| Cow position: | chr3:22021278-22021018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 27, 140 | 
| Conread position: | 51-336 | 
| Cow position: | chr3:17952351-17952634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 27, 139 | 
| Conread position: | 51-377 | 
| Cow position: | chr3:68342559-68342231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 29, 122 | 
| Conread position: | 51-412 | 
| Cow position: | chr3:31771395-31771735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 27, 46 | 
| Conread position: | 51-452 | 
| Cow position: | chr3:46341158-46341559 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 97 | 
| Conread position: | 51-456 | 
| Cow position: | chr3:70401598-70401992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 52 | 
| Conread position: | 51-462 | 
| Cow position: | chr3:49218612-49218205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 52 | 
| Conread position: | 51-471 | 
| Cow position: | chr3:2216055-2216479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 52 | 
| Conread position: | 51-526 | 
| Cow position: | chr3:15786258-15786741 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 27, 146 | 
| Conread position: | 51-527 | 
| Cow position: | chr3:16752552-16752080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 46 | 
| Conread position: | 51-532 | 
| Cow position: | chr3:55733638-55734137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 27, 52 | 
| Conread position: | 51-545 | 
| Cow position: | chr3:68647855-68648369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 243 | 
| Conread position: | 51-551 | 
| Cow position: | chr3:9663492-9662970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 221 | 
| Conread position: | 51-552 | 
| Cow position: | chr3:1830870-1830378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 82 | 
| Conread position: | 51-552 | 
| Cow position: | chr3:4457381-4456898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 233 | 
| Conread position: | 51-552 | 
| Cow position: | chr3:54340721-54340241 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 179 | 
| Conread position: | 52-220 | 
| Cow position: | chr3:13274682-13274512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 26, 0 | 
| Conread position: | 52-345 | 
| Cow position: | chr3:2903602-2903308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 25, 129 | 
| Conread position: | 52-350 | 
| Cow position: | chr3:4332054-4332355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 226 | 
| Conread position: | 52-358 | 
| Cow position: | chr3:67862101-67861797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 26, 7 | 
| Conread position: | 52-411 | 
| Cow position: | chr3:51604911-51604564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 174 | 
| Conread position: | 52-453 | 
| Cow position: | chr3:24935052-24935457 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 26, 51 | 
| Conread position: | 52-537 | 
| Cow position: | chr3:11254456-11253983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 70 | 
| Conread position: | 52-545 | 
| Cow position: | chr3:15052246-15051762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 54 | 
| Conread position: | 52-546 | 
| Cow position: | chr3:37041125-37041609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 45 | 
| Conread position: | 52-550 | 
| Cow position: | chr3:2518841-2518341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 246 | 
| Conread position: | 52-552 | 
| Cow position: | chr3:53270522-53271032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 121 | 
| Conread position: | 53-220 | 
| Cow position: | chr3:40100975-40100809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 53-221 | 
| Cow position: | chr3:76614339-76614499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 25, 110 | 
| Conread position: | 53-236 | 
| Cow position: | chr3:60389341-60389513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 25, 51 | 
| Conread position: | 53-264 | 
| Cow position: | chr3:19198378-19198583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 26, 121 | 
| Conread position: | 53-265 | 
| Cow position: | chr3:43658019-43657799 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 32, 14 | 
| Conread position: | 53-273 | 
| Cow position: | chr3:77276707-77276490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 25, 50 | 
| Conread position: | 53-377 | 
| Cow position: | chr3:77227015-77227337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 244 | 
| Conread position: | 53-411 | 
| Cow position: | chr3:5420169-5419813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 25, 230 | 
| Conread position: | 53-453 | 
| Cow position: | chr3:48296408-48296791 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 52 | 
| Conread position: | 53-456 | 
| Cow position: | chr3:81371353-81371745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 108 | 
| Conread position: | 53-525 | 
| Cow position: | chr3:62999304-62998823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 25, 42 | 
| Conread position: | 53-526 | 
| Cow position: | chr3:65236716-65237196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 101 | 
| Conread position: | 53-548 | 
| Cow position: | chr3:53909811-53910299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 35 | 
| Conread position: | 53-548 | 
| Cow position: | chr3:73961982-73961500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 26, 105 | 
| Conread position: | 53-550 | 
| Cow position: | chr3:61539493-61539993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 261 | 
| Conread position: | 53-552 | 
| Cow position: | chr3:61225038-61224550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 106 | 
| Conread position: | 54-350 | 
| Cow position: | chr3:49787108-49787404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 172, 30 | 
| Conread position: | 54-420 | 
| Cow position: | chr3:24939527-24939165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 24, 49 | 
| Conread position: | 55-453 | 
| Cow position: | chr3:58766988-58767356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 23, 39 | 
| Conread position: | 55-461 | 
| Cow position: | chr3:73708755-73709147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 32 | 
| Conread position: | 55-515 | 
| Cow position: | chr3:7566720-7566259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 118 | 
| Conread position: | 55-526 | 
| Cow position: | chr3:10958529-10958071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 48 | 
| Conread position: | 55-526 | 
| Cow position: | chr3:77188145-77188613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 163, 24 | 
| Conread position: | 55-532 | 
| Cow position: | chr3:75479713-75480177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 169, 106 | 
| Conread position: | 55-552 | 
| Cow position: | chr3:31225146-31225622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 167 | 
| Conread position: | 55-552 | 
| Cow position: | chr3:72473606-72474118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 245 | 
| Conread position: | 56-213 | 
| Cow position: | chr3:13350614-13350771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 41, 17 | 
| Conread position: | 56-214 | 
| Cow position: | chr3:42671021-42671178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 23, 47 | 
| Conread position: | 56-216 | 
| Cow position: | chr3:57022275-57022428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 23, 47 | 
| Conread position: | 56-218 | 
| Cow position: | chr3:83988181-83988340 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 22, 107 | 
| Conread position: | 56-220 | 
| Cow position: | chr3:12979224-12979387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 22, 52 | 
| Conread position: | 56-221 | 
| Cow position: | chr3:28597169-28597002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 22, 0 | 
| Conread position: | 56-225 | 
| Cow position: | chr3:70754065-70754236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 21, 120 | 
| Conread position: | 56-229 | 
| Cow position: | chr3:41947421-41947246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 21, 35 | 
| Conread position: | 56-229 | 
| Cow position: | chr3:56161001-56161178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 36, 123 | 
| Conread position: | 56-246 | 
| Cow position: | chr3:22908134-22907941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 22, 138 | 
| Conread position: | 56-250 | 
| Cow position: | chr3:9116607-9116795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 23, 51 | 
| Conread position: | 56-250 | 
| Cow position: | chr3:83920898-83921097 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 0 | 
| Conread position: | 56-258 | 
| Cow position: | chr3:53573847-53573646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 198, 101 | 
| Conread position: | 56-260 | 
| Cow position: | chr3:80655159-80655356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 46, 26 | 
| Conread position: | 56-264 | 
| Cow position: | chr3:23277845-23277634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 22, 141 | 
| Conread position: | 56-264 | 
| Cow position: | chr3:26894368-26894569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 22, 43 | 
| Conread position: | 56-264 | 
| Cow position: | chr3:53903886-53904087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 22, 102 | 
| Conread position: | 56-265 | 
| Cow position: | chr3:1133395-1133182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 23, 107 | 
| Conread position: | 56-265 | 
| Cow position: | chr3:2483153-2483355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 25, 111 | 
| Conread position: | 56-265 | 
| Cow position: | chr3:19717393-19717183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 30, 146 | 
| Conread position: | 56-268 | 
| Cow position: | chr3:48566969-48566747 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 16, 151 | 
| Conread position: | 56-349 | 
| Cow position: | chr3:3164796-3164506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 22, 119 | 
| Conread position: | 56-349 | 
| Cow position: | chr3:24305205-24304926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 22, 73 | 
| Conread position: | 56-362 | 
| Cow position: | chr3:34949696-34950002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 22, 220 | 
| Conread position: | 56-367 | 
| Cow position: | chr3:59514811-59515111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 22, 116 | 
| Conread position: | 56-373 | 
| Cow position: | chr3:78530239-78530552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 53, 9 | 
| Conread position: | 56-377 | 
| Cow position: | chr3:16157382-16157693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 22, 12 | 
| Conread position: | 56-390 | 
| Cow position: | chr3:33698421-33698761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 233 | 
| Conread position: | 56-399 | 
| Cow position: | chr3:58286198-58285868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 22, 117 | 
| Conread position: | 56-412 | 
| Cow position: | chr3:51146968-51146619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 21, 208 | 
| Conread position: | 56-449 | 
| Cow position: | chr3:7678373-7678742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 21, 46 | 
| Conread position: | 56-449 | 
| Cow position: | chr3:45647835-45648219 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 16, 121 | 
| Conread position: | 56-453 | 
| Cow position: | chr3:14263092-14263485 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 128 | 
| Conread position: | 56-456 | 
| Cow position: | chr3:81471400-81471000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 47 | 
| Conread position: | 56-462 | 
| Cow position: | chr3:61278612-61279010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 16 | 
| Conread position: | 56-490 | 
| Cow position: | chr3:42563152-42563582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 44, 219 | 
| Conread position: | 56-502 | 
| Cow position: | chr3:54959891-54960316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 47 | 
| Conread position: | 56-502 | 
| Cow position: | chr3:55010455-55010022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 22, 78 | 
| Conread position: | 56-519 | 
| Cow position: | chr3:34270631-34271065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 47 | 
| Conread position: | 56-523 | 
| Cow position: | chr3:22676382-22675937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 72 | 
| Conread position: | 56-524 | 
| Cow position: | chr3:54434670-54435139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 51 | 
| Conread position: | 56-525 | 
| Cow position: | chr3:17695306-17694830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 138 | 
| Conread position: | 56-525 | 
| Cow position: | chr3:30463466-30463004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 117 | 
| Conread position: | 56-526 | 
| Cow position: | chr3:2630498-2630933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 23, 110 | 
| Conread position: | 56-526 | 
| Cow position: | chr3:37186538-37186981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 170, 46 | 
| Conread position: | 56-527 | 
| Cow position: | chr3:7763363-7763832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 128 | 
| Conread position: | 56-527 | 
| Cow position: | chr3:55190050-55189576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 41 | 
| Conread position: | 56-535 | 
| Cow position: | chr3:56582543-56583030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 107 | 
| Conread position: | 56-535 | 
| Cow position: | chr3:82020149-82019659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 191 | 
| Conread position: | 56-537 | 
| Cow position: | chr3:45184145-45183637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 41 | 
| Conread position: | 56-542 | 
| Cow position: | chr3:78076889-78077380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 206 | 
| Conread position: | 56-550 | 
| Cow position: | chr3:68586738-68587214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 87 | 
| Conread position: | 56-551 | 
| Cow position: | chr3:53429191-53428717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 103 | 
| Conread position: | 56-552 | 
| Cow position: | chr3:3032098-3032605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 45 | 
| Conread position: | 57-516 | 
| Cow position: | chr3:82056411-82055965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 18 | 
| Conread position: | 57-552 | 
| Cow position: | chr3:74600818-74601311 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 103 | 
| Conread position: | 58-357 | 
| Cow position: | chr3:11019820-11020115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 20, 90 | 
| Conread position: | 59-220 | 
| Cow position: | chr3:56125451-56125613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 8, 0 | 
| Conread position: | 59-265 | 
| Cow position: | chr3:50359022-50358815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 37, 115 | 
| Conread position: | 60-220 | 
| Cow position: | chr3:4635044-4635205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 5, 0 | 
| Conread position: | 60-220 | 
| Cow position: | chr3:44603360-44603198 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 18, 72 | 
| Conread position: | 60-223 | 
| Cow position: | chr3:33728356-33728520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 17, 66 | 
| Conread position: | 60-229 | 
| Cow position: | chr3:17284541-17284713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 60-264 | 
| Cow position: | chr3:25691452-25691662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 139 | 
| Conread position: | 60-264 | 
| Cow position: | chr3:70333769-70333568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 18, 44 | 
| Conread position: | 60-268 | 
| Cow position: | chr3:66116407-66116199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 7, 112 | 
| Conread position: | 60-352 | 
| Cow position: | chr3:45691160-45690878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 5, 42 | 
| Conread position: | 60-358 | 
| Cow position: | chr3:60574762-60575061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 18, 216 | 
| Conread position: | 60-362 | 
| Cow position: | chr3:18005301-18005602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 18, 32 | 
| Conread position: | 60-412 | 
| Cow position: | chr3:37451774-37452120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 5, 79 | 
| Conread position: | 60-433 | 
| Cow position: | chr3:27532957-27532582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 221 | 
| Conread position: | 60-453 | 
| Cow position: | chr3:52863477-52863090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 41 | 
| Conread position: | 60-524 | 
| Cow position: | chr3:74533053-74533505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 199 | 
| Conread position: | 60-527 | 
| Cow position: | chr3:36100533-36100985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 228 | 
| Conread position: | 61-220 | 
| Cow position: | chr3:5889808-5889644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 18, 66 | 
| Conread position: | 61-266 | 
| Cow position: | chr3:66598049-66597841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 19, 58 | 
| Conread position: | 62-264 | 
| Cow position: | chr3:79148570-79148361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 16, 0 | 
| Conread position: | 62-373 | 
| Cow position: | chr3:49793121-49793409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 15, 39 | 
| Conread position: | 62-423 | 
| Cow position: | chr3:50259157-50258797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 141, 13 | 
| Conread position: | 62-520 | 
| Cow position: | chr3:72121-72587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 100 | 
| Conread position: | 62-524 | 
| Cow position: | chr3:71161502-71161959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 118 | 
| Conread position: | 62-537 | 
| Cow position: | chr3:23408632-23408180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 10 | 
| Conread position: | 64-228 | 
| Cow position: | chr3:48600616-48600781 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 14, 93 | 
| Conread position: | 64-252 | 
| Cow position: | chr3:70468095-70467910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 13, 39 | 
| Conread position: | 64-447 | 
| Cow position: | chr3:17935213-17934851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 92 | 
| Conread position: | 64-455 | 
| Cow position: | chr3:62789496-62789080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 239 | 
| Conread position: | 64-509 | 
| Cow position: | chr3:23876708-23877155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 154, 106 | 
| Conread position: | 64-537 | 
| Cow position: | chr3:48629878-48629427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 14, 128 | 
| Conread position: | 65-190 | 
| Cow position: | chr3:16890445-16890568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 108, 0 | 
| Conread position: | 65-208 | 
| Cow position: | chr3:53508089-53508231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 146 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 13, 29 | 
| Conread position: | 65-220 | 
| Cow position: | chr3:5456538-5456381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 65-225 | 
| Cow position: | chr3:52484334-52484488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 30, 59 | 
| Conread position: | 65-230 | 
| Cow position: | chr3:62292407-62292245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 13, 58 | 
| Conread position: | 65-255 | 
| Cow position: | chr3:15549201-15549393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 13, 41 | 
| Conread position: | 65-255 | 
| Cow position: | chr3:83698227-83698039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 14, 39 | 
| Conread position: | 65-256 | 
| Cow position: | chr3:73956735-73956928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 13, 133 | 
| Conread position: | 65-260 | 
| Cow position: | chr3:42594947-42594749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 13, 38 | 
| Conread position: | 65-260 | 
| Cow position: | chr3:58350301-58350486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 65-263 | 
| Cow position: | chr3:73776989-73777191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 148, 59 | 
| Conread position: | 65-265 | 
| Cow position: | chr3:15557679-15557875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 152, 131 | 
| Conread position: | 65-265 | 
| Cow position: | chr3:42914160-42914364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 13, 71 | 
| Conread position: | 65-265 | 
| Cow position: | chr3:48433655-48433859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 65-266 | 
| Cow position: | chr3:51609527-51609731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 160, 0 | 
| Conread position: | 65-268 | 
| Cow position: | chr3:58865750-58865547 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 13, 108 | 
| Conread position: | 65-298 | 
| Cow position: | chr3:53509976-53509743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 21, 28 | 
| Conread position: | 65-317 | 
| Cow position: | chr3:65581305-65581053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 153, 59 | 
| Conread position: | 65-362 | 
| Cow position: | chr3:44623186-44622883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 108, 36 | 
| Conread position: | 65-408 | 
| Cow position: | chr3:73759810-73759469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 66 | 
| Conread position: | 65-431 | 
| Cow position: | chr3:26553997-26553644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 18, 31 | 
| Conread position: | 65-433 | 
| Cow position: | chr3:75711028-75711379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 38 | 
| Conread position: | 65-436 | 
| Cow position: | chr3:76387901-76387532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 104, 39 | 
| Conread position: | 65-440 | 
| Cow position: | chr3:4031679-4032043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 107 | 
| Conread position: | 65-442 | 
| Cow position: | chr3:19006376-19006739 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 117 | 
| Conread position: | 65-453 | 
| Cow position: | chr3:8393650-8394036 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 107 | 
| Conread position: | 65-456 | 
| Cow position: | chr3:3738202-3738577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 35 | 
| Conread position: | 65-461 | 
| Cow position: | chr3:56059518-56059912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 94 | 
| Conread position: | 65-463 | 
| Cow position: | chr3:45534590-45534192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 39 | 
| Conread position: | 65-521 | 
| Cow position: | chr3:52836193-52835731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 13, 39 | 
| Conread position: | 65-526 | 
| Cow position: | chr3:64281225-64280765 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 230 | 
| Conread position: | 65-527 | 
| Cow position: | chr3:2393255-2392795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 123 | 
| Conread position: | 65-527 | 
| Cow position: | chr3:14602002-14601538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 36 | 
| Conread position: | 65-527 | 
| Cow position: | chr3:20802918-20802466 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 36 | 
| Conread position: | 65-527 | 
| Cow position: | chr3:23111793-23111359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 131, 52 | 
| Conread position: | 65-527 | 
| Cow position: | chr3:33253167-33252718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 26 | 
| Conread position: | 65-532 | 
| Cow position: | chr3:15057889-15057463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 13, 98 | 
| Conread position: | 65-532 | 
| Cow position: | chr3:52722286-52721814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 154, 51 | 
| Conread position: | 65-537 | 
| Cow position: | chr3:31309645-31309172 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 107 | 
| Conread position: | 65-546 | 
| Cow position: | chr3:64172156-64172616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 80 | 
| Conread position: | 65-552 | 
| Cow position: | chr3:42480333-42480793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 29 | 
| Conread position: | 66-209 | 
| Cow position: | chr3:17680874-17681017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 66-217 | 
| Cow position: | chr3:37289518-37289368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 128, 0 | 
| Conread position: | 66-220 | 
| Cow position: | chr3:470714-470560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 66-220 | 
| Cow position: | chr3:55815054-55815203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 12, 107 | 
| Conread position: | 66-223 | 
| Cow position: | chr3:52816461-52816612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 66-225 | 
| Cow position: | chr3:66649730-66649572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 66-228 | 
| Cow position: | chr3:82165923-82165764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 66-229 | 
| Cow position: | chr3:71104555-71104715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 66-232 | 
| Cow position: | chr3:202722-202557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 66-234 | 
| Cow position: | chr3:84153037-84153203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 158, 108 | 
| Conread position: | 66-237 | 
| Cow position: | chr3:72018623-72018793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 66-265 | 
| Cow position: | chr3:32869861-32870057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 151, 104 | 
| Conread position: | 66-265 | 
| Cow position: | chr3:38497664-38497852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 66-265 | 
| Cow position: | chr3:56102148-56102345 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 13, 72 | 
| Conread position: | 66-268 | 
| Cow position: | chr3:66964581-66964388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 152, 33 | 
| Conread position: | 66-320 | 
| Cow position: | chr3:73417234-73417484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 173, 50 | 
| Conread position: | 66-350 | 
| Cow position: | chr3:16077609-16077885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 5, 39 | 
| Conread position: | 66-362 | 
| Cow position: | chr3:27544617-27544331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 154, 95 | 
| Conread position: | 66-363 | 
| Cow position: | chr3:54862712-54862409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 33, 102 | 
| Conread position: | 66-369 | 
| Cow position: | chr3:78894602-78894318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 200, 93 | 
| Conread position: | 66-375 | 
| Cow position: | chr3:11949641-11949339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 152, 105 | 
| Conread position: | 66-375 | 
| Cow position: | chr3:18458944-18458643 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 160, 53 | 
| Conread position: | 66-393 | 
| Cow position: | chr3:56637376-56637698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 12, 163 | 
| Conread position: | 66-405 | 
| Cow position: | chr3:33327419-33327754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 156, 36 | 
| Conread position: | 66-411 | 
| Cow position: | chr3:74699683-74699332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 152, 66 | 
| Conread position: | 66-412 | 
| Cow position: | chr3:44861596-44861260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 202 | 
| Conread position: | 66-439 | 
| Cow position: | chr3:56657-56298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 37 | 
| Conread position: | 66-443 | 
| Cow position: | chr3:5096915-5097290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 109 | 
| Conread position: | 66-452 | 
| Cow position: | chr3:78946127-78945747 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 66 | 
| Conread position: | 66-455 | 
| Cow position: | chr3:80581383-80581750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 108 | 
| Conread position: | 66-456 | 
| Cow position: | chr3:58540818-58540426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 36 | 
| Conread position: | 66-468 | 
| Cow position: | chr3:83816081-83815680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 216 | 
| Conread position: | 66-523 | 
| Cow position: | chr3:45647387-45647836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 180 | 
| Conread position: | 66-523 | 
| Cow position: | chr3:63179580-63180034 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 102 | 
| Conread position: | 66-524 | 
| Cow position: | chr3:23471756-23471292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 189 | 
| Conread position: | 66-524 | 
| Cow position: | chr3:54740159-54739729 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 242, 35 | 
| Conread position: | 66-524 | 
| Cow position: | chr3:64011103-64010637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 195, 18 | 
| Conread position: | 66-526 | 
| Cow position: | chr3:77271556-77271114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 10 | 
| Conread position: | 66-527 | 
| Cow position: | chr3:13330060-13329619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 162, 36 | 
| Conread position: | 66-527 | 
| Cow position: | chr3:23944809-23945274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 152, 99 | 
| Conread position: | 66-527 | 
| Cow position: | chr3:29812954-29813400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 37 | 
| Conread position: | 66-530 | 
| Cow position: | chr3:17937127-17936670 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 202 | 
| Conread position: | 66-532 | 
| Cow position: | chr3:59333487-59333938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 36, 51 | 
| Conread position: | 66-532 | 
| Cow position: | chr3:67744916-67744461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 180 | 
| Conread position: | 66-534 | 
| Cow position: | chr3:76138200-76138639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 98 | 
| Conread position: | 66-535 | 
| Cow position: | chr3:15158753-15159211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 108 | 
| Conread position: | 66-537 | 
| Cow position: | chr3:9641276-9641741 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 96 | 
| Conread position: | 66-547 | 
| Cow position: | chr3:17957179-17957659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 54 | 
| Conread position: | 66-551 | 
| Cow position: | chr3:15229107-15228645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 108 | 
| Conread position: | 66-551 | 
| Cow position: | chr3:54050307-54049833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 87 | 
| Conread position: | 67-210 | 
| Cow position: | chr3:23678676-23678534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 67-412 | 
| Cow position: | chr3:26836079-26835762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 11, 37 | 
| Conread position: | 67-461 | 
| Cow position: | chr3:28898511-28898121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 36 | 
| Conread position: | 67-535 | 
| Cow position: | chr3:8393059-8393519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 202 | 
| Conread position: | 67-540 | 
| Cow position: | chr3:21081670-21081193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 148, 7 | 
| Conread position: | 68-213 | 
| Cow position: | chr3:69144545-69144401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 95, 9 | 
| Conread position: | 68-229 | 
| Cow position: | chr3:16622316-16622154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 10, 38 | 
| Conread position: | 68-229 | 
| Cow position: | chr3:16886167-16886006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 10, 36 | 
| Conread position: | 68-250 | 
| Cow position: | chr3:33693363-33693544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 141, 0 | 
| Conread position: | 68-261 | 
| Cow position: | chr3:83369036-83369222 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 153, 102 | 
| Conread position: | 68-263 | 
| Cow position: | chr3:15079356-15079163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 10, 105 | 
| Conread position: | 68-264 | 
| Cow position: | chr3:61467323-61467515 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 156, 22 | 
| Conread position: | 68-334 | 
| Cow position: | chr3:34316252-34315980 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 10, 0 | 
| Conread position: | 68-419 | 
| Cow position: | chr3:80202319-80202664 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 10, 115 | 
| Conread position: | 68-443 | 
| Cow position: | chr3:50069492-50069846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 87 | 
| Conread position: | 68-449 | 
| Cow position: | chr3:55085470-55085081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 105 | 
| Conread position: | 68-458 | 
| Cow position: | chr3:31933390-31933003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 10, 124 | 
| Conread position: | 68-532 | 
| Cow position: | chr3:3985044-3985496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 103 | 
| Conread position: | 68-544 | 
| Cow position: | chr3:54770718-54771173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 102, 118 | 
| Conread position: | 69-254 | 
| Cow position: | chr3:49307980-49307798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 126, 12 | 
| Conread position: | 69-265 | 
| Cow position: | chr3:59205956-59206154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 153, 32 | 
| Conread position: | 69-268 | 
| Cow position: | chr3:79112664-79112462 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 95, 15 | 
| Conread position: | 69-349 | 
| Cow position: | chr3:19789404-19789125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 161 | 
| Conread position: | 69-418 | 
| Cow position: | chr3:12675324-12674985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 34, 104 | 
| Conread position: | 69-448 | 
| Cow position: | chr3:10347069-10347443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 106 | 
| Conread position: | 69-456 | 
| Cow position: | chr3:73443374-73443000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 107 | 
| Conread position: | 69-523 | 
| Cow position: | chr3:55124563-55124115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 197, 104 | 
| Conread position: | 70-251 | 
| Cow position: | chr3:7136717-7136542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 165, 97 | 
| Conread position: | 70-265 | 
| Cow position: | chr3:16810075-16809876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 148, 0 | 
| Conread position: | 70-352 | 
| Cow position: | chr3:30417845-30418128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 148, 118 | 
| Conread position: | 70-361 | 
| Cow position: | chr3:74409211-74409486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 154, 31 | 
| Conread position: | 70-393 | 
| Cow position: | chr3:18497741-18498049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 153, 32 | 
| Conread position: | 70-456 | 
| Cow position: | chr3:59208530-59208890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 101 | 
| Conread position: | 70-524 | 
| Cow position: | chr3:73764477-73764044 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 41 | 
| Conread position: | 70-527 | 
| Cow position: | chr3:7331403-7330964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 213 | 
| Conread position: | 70-527 | 
| Cow position: | chr3:68708285-68707848 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 32 | 
| Conread position: | 70-545 | 
| Cow position: | chr3:29507312-29507758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 454, 102 | 
| Conread position: | 71-376 | 
| Cow position: | chr3:5416514-5416204 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 123, 205 | 
| Conread position: | 72-265 | 
| Cow position: | chr3:76411331-76411136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 148, 66 | 
| Conread position: | 72-493 | 
| Cow position: | chr3:8457373-8457776 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 14 | 
| Conread position: | 74-264 | 
| Cow position: | chr3:42367769-42367590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 150, 46 | 
| Conread position: | 75-545 | 
| Cow position: | chr3:18725913-18725474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 147, 42 | 
| Conread position: | 76-391 | 
| Cow position: | chr3:75057392-75057103 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 151, 27 | 
| Conread position: | 76-417 | 
| Cow position: | chr3:73236492-73236823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 153, 23 | 
| Conread position: | 77-187 | 
| Cow position: | chr3:34115023-34114915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 77-204 | 
| Cow position: | chr3:59040166-59040292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 77-215 | 
| Cow position: | chr3:30907912-30907778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 25, 51 | 
| Conread position: | 77-220 | 
| Cow position: | chr3:66603511-66603368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 77-228 | 
| Cow position: | chr3:3096624-3096478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 141, 97 | 
| Conread position: | 77-256 | 
| Cow position: | chr3:20155553-20155730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 141, 24 | 
| Conread position: | 77-263 | 
| Cow position: | chr3:18607091-18607279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 25, 162 | 
| Conread position: | 77-264 | 
| Cow position: | chr3:34392373-34392189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 86, 24 | 
| Conread position: | 77-264 | 
| Cow position: | chr3:43007682-43007490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 28, 134 | 
| Conread position: | 77-264 | 
| Cow position: | chr3:58383691-58383874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 147, 84 | 
| Conread position: | 77-265 | 
| Cow position: | chr3:11326628-11326444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 26, 47 | 
| Conread position: | 77-265 | 
| Cow position: | chr3:24276430-24276618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 139, 24 | 
| Conread position: | 77-265 | 
| Cow position: | chr3:70130089-70129902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 64, 59 | 
| Conread position: | 77-266 | 
| Cow position: | chr3:23477958-23478139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 33, 97 | 
| Conread position: | 77-319 | 
| Cow position: | chr3:32597205-32596963 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 142, 94 | 
| Conread position: | 77-324 | 
| Cow position: | chr3:55460778-55460532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 83, 188 | 
| Conread position: | 77-329 | 
| Cow position: | chr3:42588072-42588329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 140, 111 | 
| Conread position: | 77-348 | 
| Cow position: | chr3:30701045-30701298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 78, 99 | 
| Conread position: | 77-348 | 
| Cow position: | chr3:49731914-49731651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 147, 24 | 
| Conread position: | 77-349 | 
| Cow position: | chr3:63861178-63860900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 211 | 
| Conread position: | 77-356 | 
| Cow position: | chr3:42483623-42483904 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 148, 94 | 
| Conread position: | 77-359 | 
| Cow position: | chr3:56704131-56703851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 141, 100 | 
| Conread position: | 77-363 | 
| Cow position: | chr3:22170912-22171194 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 33, 95 | 
| Conread position: | 77-392 | 
| Cow position: | chr3:60892356-60892657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 189, 13 | 
| Conread position: | 77-405 | 
| Cow position: | chr3:63147421-63147105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 116, 93 | 
| Conread position: | 77-412 | 
| Cow position: | chr3:39171761-39171434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 95 | 
| Conread position: | 77-412 | 
| Cow position: | chr3:62883925-62884255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 31, 81 | 
| Conread position: | 77-412 | 
| Cow position: | chr3:81277981-81277640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 204 | 
| Conread position: | 77-433 | 
| Cow position: | chr3:27546110-27545746 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 141, 25 | 
| Conread position: | 77-447 | 
| Cow position: | chr3:17895577-17895935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 67 | 
| Conread position: | 77-449 | 
| Cow position: | chr3:26493501-26493142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 145, 24 | 
| Conread position: | 77-462 | 
| Cow position: | chr3:23496833-23496478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 158, 31 | 
| Conread position: | 77-490 | 
| Cow position: | chr3:68583279-68582871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 24 | 
| Conread position: | 77-493 | 
| Cow position: | chr3:26682070-26681674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 24 | 
| Conread position: | 77-499 | 
| Cow position: | chr3:44101704-44102113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 25, 73 | 
| Conread position: | 77-506 | 
| Cow position: | chr3:42489583-42489161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 148, 24 | 
| Conread position: | 77-512 | 
| Cow position: | chr3:68627952-68627528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 84 | 
| Conread position: | 77-516 | 
| Cow position: | chr3:53046934-53046495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 84 | 
| Conread position: | 77-516 | 
| Cow position: | chr3:66901019-66900564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 97 | 
| Conread position: | 77-524 | 
| Cow position: | chr3:49482981-49482543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 25 | 
| Conread position: | 77-524 | 
| Cow position: | chr3:57763946-57764384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 218 | 
| Conread position: | 77-524 | 
| Cow position: | chr3:75158088-75158526 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 79 | 
| Conread position: | 77-526 | 
| Cow position: | chr3:35511511-35511974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 198, 30 | 
| Conread position: | 77-527 | 
| Cow position: | chr3:17456546-17456093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 165 | 
| Conread position: | 77-527 | 
| Cow position: | chr3:20675156-20674705 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 56 | 
| Conread position: | 77-527 | 
| Cow position: | chr3:29360412-29359990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 26 | 
| Conread position: | 77-527 | 
| Cow position: | chr3:39970149-39969689 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 213 | 
| Conread position: | 77-532 | 
| Cow position: | chr3:5374058-5374488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 26 | 
| Conread position: | 77-532 | 
| Cow position: | chr3:77365571-77365113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 82 | 
| Conread position: | 77-533 | 
| Cow position: | chr3:75570718-75570266 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 27 | 
| Conread position: | 77-535 | 
| Cow position: | chr3:74233923-74234363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 23 | 
| Conread position: | 77-537 | 
| Cow position: | chr3:26065724-26066171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 114 | 
| Conread position: | 77-547 | 
| Cow position: | chr3:78443840-78443370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 142, 205 | 
| Conread position: | 78-250 | 
| Cow position: | chr3:48923789-48923617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 137, 93 | 
| Conread position: | 78-250 | 
| Cow position: | chr3:61262527-61262698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 146, 83 | 
| Conread position: | 78-255 | 
| Cow position: | chr3:37486059-37485879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 80, 54 | 
| Conread position: | 78-256 | 
| Cow position: | chr3:17742233-17742412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 140, 49 | 
| Conread position: | 78-256 | 
| Cow position: | chr3:36729412-36729587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 141, 47 | 
| Conread position: | 78-257 | 
| Cow position: | chr3:45342869-45343045 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 142, 96 | 
| Conread position: | 78-257 | 
| Cow position: | chr3:51227879-51228062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 18, 120 | 
| Conread position: | 78-264 | 
| Cow position: | chr3:32399531-32399347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 24, 96 | 
| Conread position: | 78-265 | 
| Cow position: | chr3:51255508-51255697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 52, 106 | 
| Conread position: | 78-453 | 
| Cow position: | chr3:13507190-13507561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 27 | 
| Conread position: | 78-453 | 
| Cow position: | chr3:38691681-38691314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 23 | 
| Conread position: | 78-523 | 
| Cow position: | chr3:74499948-74500427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 229 | 
| Conread position: | 78-524 | 
| Cow position: | chr3:6873521-6873100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 74 | 
| Conread position: | 78-527 | 
| Cow position: | chr3:81473728-81474177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 24, 119 | 
| Conread position: | 78-532 | 
| Cow position: | chr3:16343340-16343770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 222, 67 | 
| Conread position: | 78-532 | 
| Cow position: | chr3:58130724-58131151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 66, 81 | 
| Conread position: | 78-550 | 
| Cow position: | chr3:38863837-38864317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 100 | 
| Conread position: | 79-232 | 
| Cow position: | chr3:42603555-42603708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 78, 118 | 
| Conread position: | 79-373 | 
| Cow position: | chr3:55445092-55445372 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 150, 12 | 
| Conread position: | 79-446 | 
| Cow position: | chr3:61169508-61169885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 73, 119 | 
| Conread position: | 79-527 | 
| Cow position: | chr3:32584883-32585327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 90 | 
| Conread position: | 79-532 | 
| Cow position: | chr3:75050895-75050444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 133 | 
| Conread position: | 79-551 | 
| Cow position: | chr3:58174636-58175081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 142, 55 | 
| Conread position: | 80-235 | 
| Cow position: | chr3:75164184-75164033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 145, 65 | 
| Conread position: | 80-335 | 
| Cow position: | chr3:51542811-51543063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 138, 75 | 
| Conread position: | 80-451 | 
| Cow position: | chr3:75046144-75045785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 137, 25 | 
| Conread position: | 80-552 | 
| Cow position: | chr3:14801477-14801941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 74, 92 | 
| Conread position: | 80-552 | 
| Cow position: | chr3:54945851-54946318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 29 | 
| Conread position: | 81-369 | 
| Cow position: | chr3:79208276-79207976 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 136, 199 | 
| Conread position: | 81-412 | 
| Cow position: | chr3:20437918-20437604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 137, 20 | 
| Conread position: | 81-532 | 
| Cow position: | chr3:525081-525505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 82 | 
| Conread position: | 82-280 | 
| Cow position: | chr3:31276376-31276174 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 103, 20 | 
| Conread position: | 82-525 | 
| Cow position: | chr3:51578593-51578152 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 136, 91 | 
| Conread position: | 82-535 | 
| Cow position: | chr3:8923773-8924204 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 164, 31 | 
| Conread position: | 83-232 | 
| Cow position: | chr3:1299962-1300109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 42, 89 | 
| Conread position: | 83-264 | 
| Cow position: | chr3:63238014-63237843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 136, 87 | 
| Conread position: | 84-216 | 
| Cow position: | chr3:9638863-9638736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 133 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 84-220 | 
| Cow position: | chr3:84368639-84368512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 84-363 | 
| Cow position: | chr3:84000342-84000616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 138, 88 | 
| Conread position: | 84-462 | 
| Cow position: | chr3:70899630-70899992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 90 | 
| Conread position: | 84-516 | 
| Cow position: | chr3:69417059-69416615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 214 | 
| Conread position: | 84-525 | 
| Cow position: | chr3:45279187-45279641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 45, 37 | 
| Conread position: | 84-551 | 
| Cow position: | chr3:13302126-13301648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 103 | 
| Conread position: | 85-234 | 
| Cow position: | chr3:39873930-39873788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 85-317 | 
| Cow position: | chr3:46013225-46012987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 13, 167 | 
| Conread position: | 85-350 | 
| Cow position: | chr3:17451203-17450949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 0 | 
| Conread position: | 85-525 | 
| Cow position: | chr3:29596124-29596567 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 77 | 
| Conread position: | 86-489 | 
| Cow position: | chr3:67930446-67930055 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 75 | 
| Conread position: | 88-210 | 
| Cow position: | chr3:83508869-83508746 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 108, 17 | 
| Conread position: | 88-265 | 
| Cow position: | chr3:28939181-28938997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 14, 103 | 
| Conread position: | 88-265 | 
| Cow position: | chr3:70913345-70913168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 130, 83 | 
| Conread position: | 88-266 | 
| Cow position: | chr3:59701747-59701919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 132, 73 | 
| Conread position: | 88-412 | 
| Cow position: | chr3:80818463-80818769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 214, 39 | 
| Conread position: | 88-456 | 
| Cow position: | chr3:22716547-22716200 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 70 | 
| Conread position: | 88-462 | 
| Cow position: | chr3:57624197-57624566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 79 | 
| Conread position: | 89-225 | 
| Cow position: | chr3:68262515-68262654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 64, 87 | 
| Conread position: | 89-237 | 
| Cow position: | chr3:45307669-45307818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 129, 0 | 
| Conread position: | 89-264 | 
| Cow position: | chr3:25090794-25090966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 137, 75 | 
| Conread position: | 89-266 | 
| Cow position: | chr3:55970960-55971136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 129, 99 | 
| Conread position: | 89-325 | 
| Cow position: | chr3:81401569-81401339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 126, 22 | 
| Conread position: | 89-462 | 
| Cow position: | chr3:67544139-67543768 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 64, 208 | 
| Conread position: | 89-527 | 
| Cow position: | chr3:73394851-73395289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 195 | 
| Conread position: | 89-532 | 
| Cow position: | chr3:60933150-60933598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 63 | 
| Conread position: | 90-269 | 
| Cow position: | chr3:4329070-4329250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 73, 11 | 
| Conread position: | 90-523 | 
| Cow position: | chr3:83455416-83454987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 193 | 
| Conread position: | 91-377 | 
| Cow position: | chr3:74621260-74620972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 131, 119 | 
| Conread position: | 92-456 | 
| Cow position: | chr3:73460717-73461062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 92-552 | 
| Cow position: | chr3:75080504-75080952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 133, 170 | 
| Conread position: | 93-349 | 
| Cow position: | chr3:73590259-73590005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 132, 27 | 
| Conread position: | 93-387 | 
| Cow position: | chr3:67165651-67165946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 174, 129 | 
| Conread position: | 93-542 | 
| Cow position: | chr3:51234357-51233914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 80 | 
| Conread position: | 94-515 | 
| Cow position: | chr3:74119702-74119268 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 124, 12 | 
| Conread position: | 95-233 | 
| Cow position: | chr3:27347559-27347427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 132, 29 | 
| Conread position: | 95-291 | 
| Cow position: | chr3:56523760-56523570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 132, 49 | 
| Conread position: | 95-349 | 
| Cow position: | chr3:77467675-77467929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 123, 69 | 
| Conread position: | 95-365 | 
| Cow position: | chr3:16362998-16362730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 11, 100 | 
| Conread position: | 95-376 | 
| Cow position: | chr3:14625647-14625374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 35, 73 | 
| Conread position: | 95-526 | 
| Cow position: | chr3:52607924-52608354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 165 | 
| Conread position: | 95-527 | 
| Cow position: | chr3:16333547-16333979 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 76 | 
| Conread position: | 96-220 | 
| Cow position: | chr3:5536168-5536044 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 96-264 | 
| Cow position: | chr3:8604272-8604106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 122, 65 | 
| Conread position: | 96-265 | 
| Cow position: | chr3:11357902-11357738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 149, 28 | 
| Conread position: | 96-265 | 
| Cow position: | chr3:11422489-11422652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 96-343 | 
| Cow position: | chr3:4087424-4087176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 122, 76 | 
| Conread position: | 96-358 | 
| Cow position: | chr3:28692688-28692431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 122, 65 | 
| Conread position: | 96-454 | 
| Cow position: | chr3:23448389-23448043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 126, 68 | 
| Conread position: | 96-462 | 
| Cow position: | chr3:61143835-61144196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 108 | 
| Conread position: | 96-524 | 
| Cow position: | chr3:8060874-8061291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 128, 63 | 
| Conread position: | 96-526 | 
| Cow position: | chr3:71237899-71238322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 128, 36 | 
| Conread position: | 96-532 | 
| Cow position: | chr3:54881498-54881935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 120, 68 | 
| Conread position: | 96-552 | 
| Cow position: | chr3:30009168-30008709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 199, 86 | 
| Conread position: | 96-552 | 
| Cow position: | chr3:80564702-80565164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 133, 59 | 
| Conread position: | 97-227 | 
| Cow position: | chr3:31309146-31309020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 132 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 31, 9 | 
| Conread position: | 97-403 | 
| Cow position: | chr3:22820312-22820614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 131, 62 | 
| Conread position: | 97-412 | 
| Cow position: | chr3:14633244-14632931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 97-413 | 
| Cow position: | chr3:49140308-49139996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 68, 219 | 
| Conread position: | 97-524 | 
| Cow position: | chr3:13577443-13577048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 74 | 
| Conread position: | 97-527 | 
| Cow position: | chr3:56476425-56476848 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 77 | 
| Conread position: | 97-527 | 
| Cow position: | chr3:80740315-80740727 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 163, 75 | 
| Conread position: | 97-550 | 
| Cow position: | chr3:3556287-3556745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 67, 23 | 
| Conread position: | 98-220 | 
| Cow position: | chr3:15746714-15746593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 98-229 | 
| Cow position: | chr3:42050163-42050032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 132 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 98-264 | 
| Cow position: | chr3:23269846-23270006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 128, 66 | 
| Conread position: | 98-462 | 
| Cow position: | chr3:2680255-2680615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 174 | 
| Conread position: | 98-532 | 
| Cow position: | chr3:18686660-18687080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 48 | 
| Conread position: | 99-362 | 
| Cow position: | chr3:48578586-48578844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 200, 41 | 
| Conread position: | 99-378 | 
| Cow position: | chr3:52650788-52650509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 119, 74 | 
| Conread position: | 99-527 | 
| Cow position: | chr3:23092238-23091823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 130, 192 | 
| Conread position: | 99-537 | 
| Cow position: | chr3:2537996-2538421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 118, 91 | 
| Conread position: | 99-552 | 
| Cow position: | chr3:26970570-26971011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 66 | 
| Conread position: | 100-377 | 
| Cow position: | chr3:41328201-41328458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 118, 72 | 
| Conread position: | 101-270 | 
| Cow position: | chr3:12563226-12563392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 120, 11 | 
| Conread position: | 101-461 | 
| Cow position: | chr3:5045063-5044712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 126, 208 | 
| Conread position: | 102-264 | 
| Cow position: | chr3:82359793-82359951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 122, 80 | 
| Conread position: | 102-400 | 
| Cow position: | chr3:18217017-18216725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 147, 18 | 
| Conread position: | 102-452 | 
| Cow position: | chr3:25754784-25755112 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 312, 113 | 
| Conread position: | 103-527 | 
| Cow position: | chr3:42584291-42584693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 172, 87 | 
| Conread position: | 103-552 | 
| Cow position: | chr3:52652325-52651881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 68 | 
| Conread position: | 104-453 | 
| Cow position: | chr3:15752878-15752543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 55 | 
| Conread position: | 104-514 | 
| Cow position: | chr3:70334952-70334531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 25 | 
| Conread position: | 105-412 | 
| Cow position: | chr3:74878838-74878537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 113, 23 | 
| Conread position: | 106-386 | 
| Cow position: | chr3:55947327-55947610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 112, 201 | 
| Conread position: | 106-397 | 
| Cow position: | chr3:63332562-63332855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 115, 170 | 
| Conread position: | 106-440 | 
| Cow position: | chr3:43571492-43571827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 113, 57 | 
| Conread position: | 106-527 | 
| Cow position: | chr3:43233255-43233677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 181 | 
| Conread position: | 106-527 | 
| Cow position: | chr3:44932260-44932686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 174 | 
| Conread position: | 106-527 | 
| Cow position: | chr3:55992120-55991714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 8, 97 | 
| Conread position: | 108-431 | 
| Cow position: | chr3:23445136-23444817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 55 | 
| Conread position: | 108-469 | 
| Cow position: | chr3:55836075-55835709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 176 | 
| Conread position: | 110-264 | 
| Cow position: | chr3:35074437-35074591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 115, 44 | 
| Conread position: | 110-527 | 
| Cow position: | chr3:17134095-17134505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 114, 80 | 
| Conread position: | 110-552 | 
| Cow position: | chr3:81087852-81087440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 319, 11 | 
| Conread position: | 112-552 | 
| Cow position: | chr3:12705801-12705350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 197 | 
| Conread position: | 114-535 | 
| Cow position: | chr3:63315891-63316310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 105, 143 | 
| Conread position: | 116-264 | 
| Cow position: | chr3:4861451-4861595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 108, 55 | 
| Conread position: | 116-264 | 
| Cow position: | chr3:80922330-80922477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 110, 55 | 
| Conread position: | 116-384 | 
| Cow position: | chr3:83201766-83201500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 108, 152 | 
| Conread position: | 116-418 | 
| Cow position: | chr3:34937602-34937902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 59 | 
| Conread position: | 116-459 | 
| Cow position: | chr3:71135550-71135884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 102, 193 | 
| Conread position: | 116-552 | 
| Cow position: | chr3:22232881-22232467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 42 | 
| Conread position: | 117-256 | 
| Cow position: | chr3:29334751-29334611 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 100, 56 | 
| Conread position: | 117-452 | 
| Cow position: | chr3:27940365-27940051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 118-264 | 
| Cow position: | chr3:79196614-79196472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 111, 54 | 
| Conread position: | 119-450 | 
| Cow position: | chr3:11711718-11712055 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 13 | 
| Conread position: | 119-462 | 
| Cow position: | chr3:17447843-17447513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 55 | 
| Conread position: | 119-552 | 
| Cow position: | chr3:188624-189073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 104, 61 | 
| Conread position: | 120-533 | 
| Cow position: | chr3:68156496-68156907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 82 | 
| Conread position: | 121-386 | 
| Cow position: | chr3:55106676-55106413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 99, 154 | 
| Conread position: | 122-402 | 
| Cow position: | chr3:21547334-21547058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 98, 136 | 
| Conread position: | 123-551 | 
| Cow position: | chr3:78092740-78092313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 9 | 
| Conread position: | 124-552 | 
| Cow position: | chr3:55373805-55373389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 98, 147 | 
| Conread position: | 125-428 | 
| Cow position: | chr3:76015070-76015360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 93, 42 | 
| Conread position: | 125-462 | 
| Cow position: | chr3:59621865-59621546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 154, 14 | 
| Conread position: | 126-216 | 
| Cow position: | chr3:23215812-23215722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 91 | 
| Alignm identity: | 78 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 126-405 | 
| Cow position: | chr3:56523659-56523401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 99, 13 | 
| Conread position: | 126-552 | 
| Cow position: | chr3:53836913-53836511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 100, 30 | 
| Conread position: | 127-450 | 
| Cow position: | chr3:15506220-15506538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 141 | 
| Conread position: | 128-454 | 
| Cow position: | chr3:26960821-26960494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 93, 168 | 
| Conread position: | 129-256 | 
| Cow position: | chr3:22734500-22734375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 89, 54 | 
| Conread position: | 129-405 | 
| Cow position: | chr3:56301573-56301313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 95, 156 | 
| Conread position: | 129-456 | 
| Cow position: | chr3:74134480-74134800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 34 | 
| Conread position: | 129-545 | 
| Cow position: | chr3:3736062-3736471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 89, 10 | 
| Conread position: | 130-514 | 
| Cow position: | chr3:56612132-56612523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 88, 18 | 
| Conread position: | 130-551 | 
| Cow position: | chr3:74754105-74754509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 29 | 
| Conread position: | 131-453 | 
| Cow position: | chr3:60265459-60265161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 43 | 
| Conread position: | 132-524 | 
| Cow position: | chr3:83215031-83215440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 86, 31 | 
| Conread position: | 132-550 | 
| Cow position: | chr3:2198660-2199059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 86, 42 | 
| Conread position: | 133-386 | 
| Cow position: | chr3:22907938-22907702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 89, 62 | 
| Conread position: | 133-534 | 
| Cow position: | chr3:11063157-11063543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 135 | 
| Conread position: | 134-365 | 
| Cow position: | chr3:15859891-15859661 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 165, 0 | 
| Conread position: | 134-544 | 
| Cow position: | chr3:45211075-45211497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 167, 40 | 
| Conread position: | 136-552 | 
| Cow position: | chr3:67698061-67698475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 93, 37 | 
| Conread position: | 137-433 | 
| Cow position: | chr3:25944860-25945165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 86, 149 | 
| Conread position: | 137-524 | 
| Cow position: | chr3:83845687-83846073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 87, 36 | 
| Conread position: | 138-393 | 
| Cow position: | chr3:35005561-35005809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 138-550 | 
| Cow position: | chr3:4319494-4319916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 105 | 
| Conread position: | 139-262 | 
| Cow position: | chr3:5082857-5082732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 139-434 | 
| Cow position: | chr3:78896433-78896721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 79, 20 | 
| Conread position: | 139-530 | 
| Cow position: | chr3:70609407-70609803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 139 | 
| Conread position: | 139-532 | 
| Cow position: | chr3:25477597-25477971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 122, 140 | 
| Conread position: | 139-532 | 
| Cow position: | chr3:76713537-76713133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 88, 50 | 
| Conread position: | 140-239 | 
| Cow position: | chr3:15153425-15153527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 103 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 141-364 | 
| Cow position: | chr3:21693728-21693955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 85, 134 | 
| Conread position: | 142-544 | 
| Cow position: | chr3:36375760-36375342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 84, 123 | 
| Conread position: | 146-410 | 
| Cow position: | chr3:55777825-55778086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 154, 87 | 
| Conread position: | 147-429 | 
| Cow position: | chr3:34556449-34556173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 94, 73 | 
| Conread position: | 149-433 | 
| Cow position: | chr3:7940761-7940484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 76, 25 | 
| Conread position: | 149-533 | 
| Cow position: | chr3:76268191-76267793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 58 | 
| Conread position: | 150-456 | 
| Cow position: | chr3:57760294-57760594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 75, 23 | 
| Conread position: | 150-526 | 
| Cow position: | chr3:24352653-24353013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 42, 24 | 
| Conread position: | 150-527 | 
| Cow position: | chr3:61894382-61894009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 55, 114 | 
| Conread position: | 150-552 | 
| Cow position: | chr3:55712221-55712628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 316 | 
| Conread position: | 151-469 | 
| Cow position: | chr3:27697186-27696866 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 68, 144 | 
| Conread position: | 151-548 | 
| Cow position: | chr3:20842063-20841687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 307, 67 | 
| Conread position: | 152-490 | 
| Cow position: | chr3:15751927-15751577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 19, 12 | 
| Conread position: | 153-395 | 
| Cow position: | chr3:53095141-53094896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 65, 133 | 
| Conread position: | 154-254 | 
| Cow position: | chr3:14801034-14800932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 103 | 
| Alignm identity: | 86 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 154-526 | 
| Cow position: | chr3:14598746-14599093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 71, 102 | 
| Conread position: | 155-551 | 
| Cow position: | chr3:38828563-38828949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 44, 139 | 
| Conread position: | 158-391 | 
| Cow position: | chr3:70631818-70632052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 133, 108 | 
| Conread position: | 159-433 | 
| Cow position: | chr3:3637987-3638251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 59, 148 | 
| Conread position: | 160-387 | 
| Cow position: | chr3:77665974-77665743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 60, 196 | 
| Conread position: | 160-462 | 
| Cow position: | chr3:59884271-59883966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 12, 35 | 
| Conread position: | 160-527 | 
| Cow position: | chr3:83700068-83699694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 59, 139 | 
| Conread position: | 160-532 | 
| Cow position: | chr3:67520375-67519997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 5, 114 | 
| Conread position: | 162-516 | 
| Cow position: | chr3:74079835-74079475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 121 | 
| Conread position: | 163-551 | 
| Cow position: | chr3:30940625-30941004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 62, 32 | 
| Conread position: | 163-552 | 
| Cow position: | chr3:55319098-55318702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 77 | 
| Conread position: | 163-552 | 
| Cow position: | chr3:79825111-79824722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 57, 92 | 
| Conread position: | 164-396 | 
| Cow position: | chr3:36446911-36446682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 65, 78 | 
| Conread position: | 164-437 | 
| Cow position: | chr3:15904165-15903885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 55, 132 | 
| Conread position: | 164-449 | 
| Cow position: | chr3:66884135-66883855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 54, 120 | 
| Conread position: | 164-450 | 
| Cow position: | chr3:49791007-49790722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 31, 10 | 
| Conread position: | 164-519 | 
| Cow position: | chr3:57273872-57274224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 74 | 
| Conread position: | 164-527 | 
| Cow position: | chr3:23105560-23105191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 144 | 
| Conread position: | 164-535 | 
| Cow position: | chr3:6182394-6182051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 292, 67 | 
| Conread position: | 164-537 | 
| Cow position: | chr3:38035786-38035405 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 54, 132 | 
| Conread position: | 164-545 | 
| Cow position: | chr3:53875953-53875570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 55, 92 | 
| Conread position: | 167-452 | 
| Cow position: | chr3:63269034-63269314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 59, 43 | 
| Conread position: | 167-527 | 
| Cow position: | chr3:54374052-54373683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 135 | 
| Conread position: | 167-548 | 
| Cow position: | chr3:45667543-45667149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 38, 23 | 
| Conread position: | 170-450 | 
| Cow position: | chr3:30221998-30222281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 48, 21 | 
| Conread position: | 173-410 | 
| Cow position: | chr3:79092580-79092342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 50, 134 | 
| Conread position: | 173-533 | 
| Cow position: | chr3:54506524-54506885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 95 | 
| Conread position: | 174-411 | 
| Cow position: | chr3:34294469-34294217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 50, 123 | 
| Conread position: | 174-441 | 
| Cow position: | chr3:74502506-74502244 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 52, 114 | 
| Conread position: | 174-454 | 
| Cow position: | chr3:75687623-75687344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 47, 122 | 
| Conread position: | 174-476 | 
| Cow position: | chr3:20678019-20677726 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 135 | 
| Conread position: | 174-548 | 
| Cow position: | chr3:19198803-19199180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 92, 48 | 
| Conread position: | 174-551 | 
| Cow position: | chr3:53318219-53318608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 44, 129 | 
| Conread position: | 175-526 | 
| Cow position: | chr3:59597002-59597346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 21 | 
| Conread position: | 175-546 | 
| Cow position: | chr3:75853514-75853145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 49, 165 | 
| Conread position: | 177-468 | 
| Cow position: | chr3:34669909-34669626 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 41, 119 | 
| Conread position: | 177-549 | 
| Cow position: | chr3:26981883-26982242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 49, 111 | 
| Conread position: | 177-549 | 
| Cow position: | chr3:35153440-35153800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 41, 65 | 
| Conread position: | 179-526 | 
| Cow position: | chr3:76922842-76922500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 102 | 
| Conread position: | 179-535 | 
| Cow position: | chr3:70762302-70761941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 112 | 
| Conread position: | 179-547 | 
| Cow position: | chr3:24872534-24872885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 12, 88 | 
| Conread position: | 180-532 | 
| Cow position: | chr3:36418644-36418308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 66 | 
| Conread position: | 181-546 | 
| Cow position: | chr3:62046485-62046864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 98 | 
| Conread position: | 182-551 | 
| Cow position: | chr3:19792716-19793093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 236 | 
| Conread position: | 183-462 | 
| Cow position: | chr3:26874415-26874693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 21 | 
| Conread position: | 183-527 | 
| Cow position: | chr3:19585687-19586038 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 21 | 
| Conread position: | 183-543 | 
| Cow position: | chr3:55819572-55819941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 280 | 
| Conread position: | 183-551 | 
| Cow position: | chr3:18144292-18143913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 35, 56 | 
| Conread position: | 185-451 | 
| Cow position: | chr3:31850543-31850286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 41, 91 | 
| Conread position: | 189-550 | 
| Cow position: | chr3:32787291-32787656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 38, 93 | 
| Conread position: | 190-489 | 
| Cow position: | chr3:54100891-54100598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 18, 107 | 
| Conread position: | 190-526 | 
| Cow position: | chr3:48810805-48810465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 37, 56 | 
| Conread position: | 190-547 | 
| Cow position: | chr3:2648686-2648315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 7, 79 | 
| Conread position: | 191-441 | 
| Cow position: | chr3:55109782-55109532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 12 | 
| Conread position: | 192-526 | 
| Cow position: | chr3:68616491-68616162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 60 | 
| Conread position: | 193-532 | 
| Cow position: | chr3:48073039-48072707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 265, 38 | 
| Conread position: | 195-516 | 
| Cow position: | chr3:19793755-19793427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 31, 5 | 
| Conread position: | 195-535 | 
| Cow position: | chr3:81039910-81039564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 11, 113 | 
| Conread position: | 196-521 | 
| Cow position: | chr3:12978779-12978447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 25, 95 | 
| Conread position: | 196-541 | 
| Cow position: | chr3:58765239-58764898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 117 | 
| Conread position: | 197-455 | 
| Cow position: | chr3:53508460-53508706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 71 | 
| Conread position: | 197-535 | 
| Cow position: | chr3:60264876-60264540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 54 | 
| Conread position: | 198-453 | 
| Cow position: | chr3:58973143-58973388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 31, 41 | 
| Conread position: | 198-456 | 
| Cow position: | chr3:74242835-74243088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 31, 61 | 
| Conread position: | 199-499 | 
| Cow position: | chr3:84199520-84199810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 67, 27 | 
| Conread position: | 199-525 | 
| Cow position: | chr3:59034874-59035215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 28, 113 | 
| Conread position: | 202-393 | 
| Cow position: | chr3:32184177-32183985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 21, 81 | 
| Conread position: | 202-527 | 
| Cow position: | chr3:24468535-24468210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 24, 93 | 
| Conread position: | 202-537 | 
| Cow position: | chr3:15153536-15153870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 98, 29 | 
| Conread position: | 202-552 | 
| Cow position: | chr3:77581952-77582306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 16, 93 | 
| Conread position: | 205-549 | 
| Cow position: | chr3:46541981-46541655 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 20, 72 | 
| Conread position: | 206-532 | 
| Cow position: | chr3:70334117-70333790 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 12, 86 | 
| Conread position: | 206-537 | 
| Cow position: | chr3:55177905-55177567 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 77 | 
| Conread position: | 206-550 | 
| Cow position: | chr3:23920582-23920232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 19, 86 | 
| Conread position: | 208-544 | 
| Cow position: | chr3:59299430-59299764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 8 | 
| Conread position: | 209-547 | 
| Cow position: | chr3:79196610-79196957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 71 | 
| Conread position: | 210-517 | 
| Cow position: | chr3:1517660-1517349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 39, 60 | 
| Conread position: | 211-461 | 
| Cow position: | chr3:5366623-5366869 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 15, 86 | 
| Conread position: | 212-525 | 
| Cow position: | chr3:74584072-74584362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 9, 61 | 
| Conread position: | 212-532 | 
| Cow position: | chr3:3883965-3883641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 75 | 
| Conread position: | 212-535 | 
| Cow position: | chr3:60389624-60389935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 166, 15 | 
| Conread position: | 213-527 | 
| Cow position: | chr3:3649359-3649065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 215-462 | 
| Cow position: | chr3:1785385-1785142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 14, 64 | 
| Conread position: | 217-498 | 
| Cow position: | chr3:73820509-73820217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 51, 62 | 
| Conread position: | 217-524 | 
| Cow position: | chr3:3889707-3889406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 9, 51 | 
| Conread position: | 217-525 | 
| Cow position: | chr3:21015100-21014784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 169, 92 | 
| Conread position: | 217-533 | 
| Cow position: | chr3:48900477-48900150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 76, 31 | 
| Conread position: | 217-547 | 
| Cow position: | chr3:74939418-74939775 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 48, 64 | 
| Conread position: | 217-549 | 
| Cow position: | chr3:76155846-76156181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 64 | 
| Conread position: | 218-550 | 
| Cow position: | chr3:59040429-59040765 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 59, 76 | 
| Conread position: | 219-525 | 
| Cow position: | chr3:61116995-61116700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 30, 87 | 
| Conread position: | 220-522 | 
| Cow position: | chr3:74846847-74846556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 21, 60 | 
| Conread position: | 223-514 | 
| Cow position: | chr3:18607538-18607824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 215, 12 | 
| Conread position: | 224-453 | 
| Cow position: | chr3:53704099-53703871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 29, 15 | 
| Conread position: | 224-535 | 
| Cow position: | chr3:15443862-15443546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 232, 76 | 
| Conread position: | 225-450 | 
| Cow position: | chr3:17235340-17235127 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 134, 19 | 
| Conread position: | 225-462 | 
| Cow position: | chr3:84175957-84175722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 99, 73 | 
| Conread position: | 225-523 | 
| Cow position: | chr3:7661721-7662027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 53, 78 | 
| Conread position: | 225-527 | 
| Cow position: | chr3:72342113-72342422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 228, 77 | 
| Conread position: | 225-542 | 
| Cow position: | chr3:78093515-78093206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 54 | 
| Conread position: | 225-549 | 
| Cow position: | chr3:47417697-47417373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 69, 80 | 
| Conread position: | 225-550 | 
| Cow position: | chr3:17331595-17331915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 54 | 
| Conread position: | 225-550 | 
| Cow position: | chr3:73237063-73237379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 225-552 | 
| Cow position: | chr3:18426831-18426498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 170, 70 | 
| Conread position: | 227-527 | 
| Cow position: | chr3:35056108-35055802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 129, 74 | 
| Conread position: | 227-544 | 
| Cow position: | chr3:51402779-51403087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 65 | 
| Conread position: | 227-549 | 
| Cow position: | chr3:11276700-11276404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 251, 44 | 
| Conread position: | 228-537 | 
| Cow position: | chr3:14194307-14194008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 229-532 | 
| Cow position: | chr3:22221193-22221505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 71, 8 | 
| Conread position: | 232-470 | 
| Cow position: | chr3:35621178-35621412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 35, 49 | 
| Conread position: | 232-470 | 
| Cow position: | chr3:54290634-54290399 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 210, 34 | 
| Conread position: | 234-420 | 
| Cow position: | chr3:12670737-12670555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 8, 44 | 
| Conread position: | 234-515 | 
| Cow position: | chr3:38765792-38765533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 115, 68 | 
| Conread position: | 234-551 | 
| Cow position: | chr3:58134810-58134487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 41, 47 | 
| Conread position: | 235-456 | 
| Cow position: | chr3:63177357-63177578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 64, 201 | 
| Conread position: | 236-527 | 
| Cow position: | chr3:3037053-3036767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 9, 72 | 
| Conread position: | 237-525 | 
| Cow position: | chr3:15951031-15950745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 223, 63 | 
| Conread position: | 242-523 | 
| Cow position: | chr3:18059588-18059874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 124, 7 | 
| Conread position: | 244-453 | 
| Cow position: | chr3:33693704-33693912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 6, 38 | 
| Conread position: | 244-527 | 
| Cow position: | chr3:58318066-58317769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 55, 85 | 
| Conread position: | 246-522 | 
| Cow position: | chr3:65019976-65019684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 20, 33 | 
| Conread position: | 248-439 | 
| Cow position: | chr3:28496719-28496913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 123, 51 | 
| Conread position: | 248-460 | 
| Cow position: | chr3:10677741-10677544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 183, 19 | 
| Conread position: | 248-461 | 
| Cow position: | chr3:55983986-55984199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 51, 58 | 
| Conread position: | 248-537 | 
| Cow position: | chr3:4268691-4268389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 107, 47 | 
| Conread position: | 248-552 | 
| Cow position: | chr3:57704214-57704531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 146 | 
| Conread position: | 249-522 | 
| Cow position: | chr3:9116920-9117203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 17, 30 | 
| Conread position: | 250-456 | 
| Cow position: | chr3:7427892-7428094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 250-549 | 
| Cow position: | chr3:39873801-39873511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 65, 28 | 
| Conread position: | 253-528 | 
| Cow position: | chr3:64135611-64135872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 0 | 
| Conread position: | 254-423 | 
| Cow position: | chr3:46108711-46108881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 70, 52 | 
| Conread position: | 277-548 | 
| Cow position: | chr3:54982160-54981896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 45, 5 | 
| Conread position: | 278-454 | 
| Cow position: | chr3:36672889-36672717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 280-405 | 
| Cow position: | chr3:19162535-19162656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 280-423 | 
| Cow position: | chr3:54030202-54030344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 280-438 | 
| Cow position: | chr3:81277547-81277390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 280-439 | 
| Cow position: | chr3:3471961-3472119 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 21, 27 | 
| Conread position: | 280-456 | 
| Cow position: | chr3:3478333-3478159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 38, 20 | 
| Conread position: | 280-462 | 
| Cow position: | chr3:4480863-4481044 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 65, 0 | 
| Conread position: | 280-523 | 
| Cow position: | chr3:10668956-10668709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 21 | 
| Conread position: | 280-524 | 
| Cow position: | chr3:31350182-31349938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 21 | 
| Conread position: | 280-524 | 
| Cow position: | chr3:31361341-31361594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 25 | 
| Conread position: | 280-524 | 
| Cow position: | chr3:44625240-44625008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 280-524 | 
| Cow position: | chr3:75608420-75608659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 0 | 
| Conread position: | 280-524 | 
| Cow position: | chr3:81881519-81881287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 102, 25 | 
| Conread position: | 280-527 | 
| Cow position: | chr3:19682615-19682880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 112, 0 | 
| Conread position: | 280-527 | 
| Cow position: | chr3:71474485-71474233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 163 | 
| Conread position: | 280-532 | 
| Cow position: | chr3:76269820-76270067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 37 | 
| Conread position: | 280-548 | 
| Cow position: | chr3:47753147-47753434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 170, 20 | 
| Conread position: | 280-548 | 
| Cow position: | chr3:69785703-69785428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 26 | 
| Conread position: | 280-550 | 
| Cow position: | chr3:22165494-22165220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 15 | 
| Conread position: | 280-552 | 
| Cow position: | chr3:478877-478623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 254, 90 | 
| Conread position: | 280-552 | 
| Cow position: | chr3:64196747-64197022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 32 | 
| Conread position: | 281-456 | 
| Cow position: | chr3:44330514-44330341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 281-462 | 
| Cow position: | chr3:15173002-15173183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 41, 24 | 
| Conread position: | 281-545 | 
| Cow position: | chr3:21867114-21866848 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 95, 13 | 
| Conread position: | 282-498 | 
| Cow position: | chr3:70614561-70614341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 149, 15 | 
| Conread position: | 282-522 | 
| Cow position: | chr3:75238383-75238630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 43, 11 | 
| Conread position: | 282-524 | 
| Cow position: | chr3:14546926-14547170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 171, 13 | 
| Conread position: | 282-524 | 
| Cow position: | chr3:56483437-56483672 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 23, 105 | 
| Conread position: | 282-525 | 
| Cow position: | chr3:34871490-34871740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 174, 27 | 
| Conread position: | 282-537 | 
| Cow position: | chr3:47316455-47316194 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 35, 20 | 
| Conread position: | 282-540 | 
| Cow position: | chr3:48459407-48459142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 18, 23 | 
| Conread position: | 282-546 | 
| Cow position: | chr3:36160270-36160011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 35, 22 | 
| Conread position: | 282-550 | 
| Cow position: | chr3:27976601-27976325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 11, 22 | 
| Conread position: | 282-552 | 
| Cow position: | chr3:3656439-3656712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 153, 39 | 
| Conread position: | 283-549 | 
| Cow position: | chr3:79272647-79272380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 171, 18 | 
| Conread position: | 284-453 | 
| Cow position: | chr3:2067819-2067989 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 160, 16 | 
| Conread position: | 284-516 | 
| Cow position: | chr3:19626582-19626345 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 151, 122 | 
| Conread position: | 284-551 | 
| Cow position: | chr3:10591591-10591314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 190 | 
| Conread position: | 286-484 | 
| Cow position: | chr3:74802139-74801945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 289-535 | 
| Cow position: | chr3:63844861-63845122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 48, 6 | 
| Conread position: | 289-548 | 
| Cow position: | chr3:51609254-51608988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 161, 32 | 
| Conread position: | 290-527 | 
| Cow position: | chr3:33002324-33002559 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 113, 15 | 
| Conread position: | 290-535 | 
| Cow position: | chr3:4548957-4549199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 23 | 
| Conread position: | 290-548 | 
| Cow position: | chr3:83889180-83889441 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 164, 14 | 
| Conread position: | 291-525 | 
| Cow position: | chr3:84174234-84174476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 69, 15 | 
| Conread position: | 292-526 | 
| Cow position: | chr3:13380340-13380105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 164, 29 | 
| Conread position: | 293-528 | 
| Cow position: | chr3:82629250-82629485 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 178, 16 | 
| Conread position: | 294-524 | 
| Cow position: | chr3:54067732-54067965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 146, 15 | 
| Conread position: | 294-550 | 
| Cow position: | chr3:79271778-79271514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 48, 138 | 
| Conread position: | 295-535 | 
| Cow position: | chr3:29334482-29334229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 32, 239 | 
| Conread position: | 296-527 | 
| Cow position: | chr3:3275531-3275769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 9, 44 | 
| Conread position: | 297-450 | 
| Cow position: | chr3:51349761-51349913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 5, 0 | 
| Conread position: | 297-522 | 
| Cow position: | chr3:1028708-1028477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 156, 7 | 
| Conread position: | 297-527 | 
| Cow position: | chr3:15861932-15862169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 57, 133 | 
| Conread position: | 297-545 | 
| Cow position: | chr3:69650952-69650708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 204, 170 | 
| Conread position: | 297-550 | 
| Cow position: | chr3:26338091-26337822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 13, 250 | 
| Conread position: | 298-442 | 
| Cow position: | chr3:20333944-20334089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 146 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 298-537 | 
| Cow position: | chr3:11281704-11281953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 158, 0 | 
| Conread position: | 298-547 | 
| Cow position: | chr3:75778124-75777877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 24, 11 | 
| Conread position: | 299-524 | 
| Cow position: | chr3:1036961-1037199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 145, 0 | 
| Conread position: | 299-525 | 
| Cow position: | chr3:7581778-7581546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 134, 114 | 
| Conread position: | 300-513 | 
| Cow position: | chr3:39988295-39988092 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 301-527 | 
| Cow position: | chr3:23132228-23131994 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 0 | 
| Conread position: | 301-533 | 
| Cow position: | chr3:71423610-71423389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 302-469 | 
| Cow position: | chr3:74900698-74900534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 118, 0 | 
| Conread position: | 302-491 | 
| Cow position: | chr3:15080714-15080529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 41, 7 | 
| Conread position: | 302-514 | 
| Cow position: | chr3:53084046-53083822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 90, 0 | 
| Conread position: | 302-527 | 
| Cow position: | chr3:49344635-49344866 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 142, 210 | 
| Conread position: | 302-549 | 
| Cow position: | chr3:3316873-3316610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 83 | 
| Conread position: | 302-551 | 
| Cow position: | chr3:56949146-56948899 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 158, 197 | 
| Conread position: | 303-452 | 
| Cow position: | chr3:50593970-50593823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 5, 73 | 
| Conread position: | 303-526 | 
| Cow position: | chr3:10372213-10372429 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 39, 73 | 
| Conread position: | 303-532 | 
| Cow position: | chr3:45700747-45700981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 303-539 | 
| Cow position: | chr3:81234331-81234574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 303-547 | 
| Cow position: | chr3:5040364-5040111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 132, 68 | 
| Conread position: | 303-550 | 
| Cow position: | chr3:48468116-48468371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 14, 20 | 
| Conread position: | 304-462 | 
| Cow position: | chr3:21997843-21997686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 5, 0 | 
| Conread position: | 304-510 | 
| Cow position: | chr3:84250600-84250392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 6, 63 | 
| Conread position: | 304-527 | 
| Cow position: | chr3:8540468-8540675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 151, 5 | 
| Conread position: | 304-527 | 
| Cow position: | chr3:75173638-75173426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 111 | 
| Conread position: | 305-465 | 
| Cow position: | chr3:41652321-41652482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 137, 0 | 
| Conread position: | 305-527 | 
| Cow position: | chr3:9120790-9121016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 145, 70 | 
| Conread position: | 305-533 | 
| Cow position: | chr3:3946983-3947216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 140, 204 | 
| Conread position: | 305-550 | 
| Cow position: | chr3:18001143-18001384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 217, 148 | 
| Conread position: | 306-456 | 
| Cow position: | chr3:23667566-23667716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 62, 130 | 
| Conread position: | 306-462 | 
| Cow position: | chr3:36913996-36914155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 129, 0 | 
| Conread position: | 306-527 | 
| Cow position: | chr3:67626397-67626183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 48, 83 | 
| Conread position: | 306-532 | 
| Cow position: | chr3:31804821-31804591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 12, 122 | 
| Conread position: | 306-540 | 
| Cow position: | chr3:68004756-68004521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 155, 196 | 
| Conread position: | 307-461 | 
| Cow position: | chr3:20515871-20515717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 308-552 | 
| Cow position: | chr3:38248599-38248857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 51, 47 | 
| Conread position: | 309-462 | 
| Cow position: | chr3:10103990-10104140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 309-481 | 
| Cow position: | chr3:10026736-10026572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 309-522 | 
| Cow position: | chr3:73299029-73299234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 15, 62 | 
| Conread position: | 309-527 | 
| Cow position: | chr3:30357470-30357683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 17, 81 | 
| Conread position: | 309-527 | 
| Cow position: | chr3:58527336-58527551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 15, 68 | 
| Conread position: | 309-535 | 
| Cow position: | chr3:16107408-16107193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 152, 28 | 
| Conread position: | 309-536 | 
| Cow position: | chr3:71703427-71703641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 309-546 | 
| Cow position: | chr3:40213084-40212840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 125, 35 | 
| Conread position: | 309-547 | 
| Cow position: | chr3:53904406-53904629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 68, 72 | 
| Conread position: | 309-551 | 
| Cow position: | chr3:40100769-40100528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 15, 143 | 
| Conread position: | 309-552 | 
| Cow position: | chr3:5305747-5305986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 162, 0 | 
| Conread position: | 310-455 | 
| Cow position: | chr3:32409162-32409308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 138, 0 | 
| Conread position: | 310-461 | 
| Cow position: | chr3:21641938-21642088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 310-527 | 
| Cow position: | chr3:29828198-29827993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 85, 136 | 
| Conread position: | 310-546 | 
| Cow position: | chr3:73335234-73335470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 143, 191 | 
| Conread position: | 310-551 | 
| Cow position: | chr3:4120415-4120175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 146, 11 | 
| Conread position: | 310-551 | 
| Cow position: | chr3:49363059-49363303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 220 | 
| Conread position: | 310-551 | 
| Cow position: | chr3:73741919-73741689 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 215, 71 | 
| Conread position: | 311-509 | 
| Cow position: | chr3:16505524-16505328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 136, 63 | 
| Conread position: | 311-515 | 
| Cow position: | chr3:82174108-82173909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 124, 0 | 
| Conread position: | 311-524 | 
| Cow position: | chr3:39248073-39247861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 80, 166 | 
| Conread position: | 311-525 | 
| Cow position: | chr3:49996772-49996545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 311-527 | 
| Cow position: | chr3:1011437-1011666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 77, 122 | 
| Conread position: | 311-532 | 
| Cow position: | chr3:8349614-8349392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 50, 124 | 
| Conread position: | 311-551 | 
| Cow position: | chr3:31554900-31555130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 11, 104 | 
| Conread position: | 312-443 | 
| Cow position: | chr3:9588690-9588561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 132 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 312-527 | 
| Cow position: | chr3:44961052-44960844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 312-552 | 
| Cow position: | chr3:75107726-75107971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 0 | 
| Conread position: | 313-462 | 
| Cow position: | chr3:28258047-28258195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 11, 108 | 
| Conread position: | 313-462 | 
| Cow position: | chr3:38100094-38100245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 313-519 | 
| Cow position: | chr3:26603602-26603380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 314-462 | 
| Cow position: | chr3:59919986-59920129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 314-552 | 
| Cow position: | chr3:27083095-27082844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 41, 113 | 
| Conread position: | 315-552 | 
| Cow position: | chr3:8814158-8813921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 9, 16 | 
| Conread position: | 318-453 | 
| Cow position: | chr3:20779513-20779382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 6, 58 | 
| Conread position: | 319-546 | 
| Cow position: | chr3:11229406-11229178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 131, 182 | 
| Conread position: | 319-551 | 
| Cow position: | chr3:35624586-35624348 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 136, 101 | 
| Conread position: | 321-462 | 
| Cow position: | chr3:64648453-64648594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 321-505 | 
| Cow position: | chr3:82123587-82123401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 16, 173 | 
| Conread position: | 321-526 | 
| Cow position: | chr3:48478068-48477870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 142, 17 | 
| Conread position: | 321-539 | 
| Cow position: | chr3:15973527-15973756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 130, 0 | 
| Conread position: | 321-546 | 
| Cow position: | chr3:6728369-6728130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 134, 224 | 
| Conread position: | 321-549 | 
| Cow position: | chr3:46792346-46792576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 117, 99 | 
| Conread position: | 321-550 | 
| Cow position: | chr3:44959903-44960140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 132, 218 | 
| Conread position: | 321-552 | 
| Cow position: | chr3:39996930-39996694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 53, 181 | 
| Conread position: | 322-420 | 
| Cow position: | chr3:35283732-35283830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 99 | 
| Alignm identity: | 82 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 322-517 | 
| Cow position: | chr3:8556872-8556677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 124, 93 | 
| Conread position: | 322-546 | 
| Cow position: | chr3:14770920-14770695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 111, 99 | 
| Conread position: | 323-448 | 
| Cow position: | chr3:11292285-11292160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 323-452 | 
| Cow position: | chr3:64373193-64373064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 323-490 | 
| Cow position: | chr3:40961529-40961691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 323-524 | 
| Cow position: | chr3:52456881-52457080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 141, 41 | 
| Conread position: | 323-527 | 
| Cow position: | chr3:3698622-3698818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 323-527 | 
| Cow position: | chr3:61024060-61023847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 133, 209 | 
| Conread position: | 323-535 | 
| Cow position: | chr3:74644520-74644742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 25, 31 | 
| Conread position: | 323-537 | 
| Cow position: | chr3:10732853-10733062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 22, 112 | 
| Conread position: | 323-537 | 
| Cow position: | chr3:82366092-82366314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 79, 15 | 
| Conread position: | 323-545 | 
| Cow position: | chr3:54905581-54905797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 323-546 | 
| Cow position: | chr3:23203268-23203035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 133, 85 | 
| Conread position: | 323-546 | 
| Cow position: | chr3:84137852-84137619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 137, 0 | 
| Conread position: | 323-550 | 
| Cow position: | chr3:41863587-41863821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 324-428 | 
| Cow position: | chr3:57022998-57023102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 105 | 
| Alignm identity: | 86 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 324-456 | 
| Cow position: | chr3:56704357-56704225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 133 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 325-462 | 
| Cow position: | chr3:32457159-32457295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 95, 0 | 
| Conread position: | 325-519 | 
| Cow position: | chr3:42967413-42967226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 325-524 | 
| Cow position: | chr3:17058581-17058376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 133, 0 | 
| Conread position: | 325-527 | 
| Cow position: | chr3:15160485-15160691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 133, 0 | 
| Conread position: | 325-533 | 
| Cow position: | chr3:28902794-28902582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 131, 95 | 
| Conread position: | 325-552 | 
| Cow position: | chr3:18831386-18831620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 326-463 | 
| Cow position: | chr3:11705217-11705354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 326-525 | 
| Cow position: | chr3:46559749-46559544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 130, 106 | 
| Conread position: | 326-550 | 
| Cow position: | chr3:22924409-22924182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 0 | 
| Conread position: | 327-443 | 
| Cow position: | chr3:58384054-58384176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 327-550 | 
| Cow position: | chr3:24596456-24596231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 127, 169 | 
| Conread position: | 328-456 | 
| Cow position: | chr3:24371890-24372017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 328-511 | 
| Cow position: | chr3:11640701-11640894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 128, 0 | 
| Conread position: | 328-527 | 
| Cow position: | chr3:5703146-5703350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 76, 123 | 
| Conread position: | 328-552 | 
| Cow position: | chr3:59317671-59317897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 121, 15 | 
| Conread position: | 329-508 | 
| Cow position: | chr3:35238982-35239166 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 133, 88 | 
| Conread position: | 329-517 | 
| Cow position: | chr3:77276489-77276301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 122, 53 | 
| Conread position: | 329-525 | 
| Cow position: | chr3:20021238-20021440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 0 | 
| Conread position: | 329-527 | 
| Cow position: | chr3:52845520-52845729 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 329-541 | 
| Cow position: | chr3:73421524-73421295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 118, 0 | 
| Conread position: | 330-527 | 
| Cow position: | chr3:32610234-32610418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 330-535 | 
| Cow position: | chr3:8523180-8522972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 130, 33 | 
| Conread position: | 331-532 | 
| Cow position: | chr3:28897048-28896842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 117, 22 | 
| Conread position: | 331-532 | 
| Cow position: | chr3:78071821-78071613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 332-535 | 
| Cow position: | chr3:67407394-67407185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 0 | 
| Conread position: | 332-546 | 
| Cow position: | chr3:18479326-18479107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 126, 79 | 
| Conread position: | 332-552 | 
| Cow position: | chr3:21959631-21959864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 19, 30 | 
| Conread position: | 333-456 | 
| Cow position: | chr3:20175021-20175144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 333-550 | 
| Cow position: | chr3:22092122-22092323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 95, 81 | 
| Conread position: | 334-448 | 
| Cow position: | chr3:16601416-16601530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 115 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 334-515 | 
| Cow position: | chr3:29188622-29188432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 334-551 | 
| Cow position: | chr3:45314318-45314549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 121, 215 | 
| Conread position: | 336-537 | 
| Cow position: | chr3:19788854-19788656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 124, 169 | 
| Conread position: | 338-524 | 
| Cow position: | chr3:28323195-28323381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 15, 24 | 
| Conread position: | 338-527 | 
| Cow position: | chr3:4318118-4317936 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 129, 38 | 
| Conread position: | 338-527 | 
| Cow position: | chr3:59681926-59681733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 125, 0 | 
| Conread position: | 338-527 | 
| Cow position: | chr3:59947643-59947842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 100, 93 | 
| Conread position: | 338-546 | 
| Cow position: | chr3:58101657-58101868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 111, 68 | 
| Conread position: | 339-455 | 
| Cow position: | chr3:76415924-76415809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 339-527 | 
| Cow position: | chr3:75966802-75966608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 86, 37 | 
| Conread position: | 339-532 | 
| Cow position: | chr3:27246980-27246788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 112, 0 | 
| Conread position: | 339-532 | 
| Cow position: | chr3:73701483-73701677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 48, 17 | 
| Conread position: | 339-535 | 
| Cow position: | chr3:31115291-31115095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 106 | 
| Conread position: | 339-541 | 
| Cow position: | chr3:54557653-54557854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 37, 43 | 
| Conread position: | 339-549 | 
| Cow position: | chr3:73589792-73589571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 114, 202 | 
| Conread position: | 341-527 | 
| Cow position: | chr3:35074859-35075046 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 341-527 | 
| Cow position: | chr3:50350988-50350804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 49, 96 | 
| Conread position: | 341-532 | 
| Cow position: | chr3:8526383-8526200 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 112, 39 | 
| Conread position: | 341-537 | 
| Cow position: | chr3:53604765-53604562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 87, 77 | 
| Conread position: | 341-542 | 
| Cow position: | chr3:985995-986202 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 115, 84 | 
| Conread position: | 341-548 | 
| Cow position: | chr3:32376793-32377005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 21, 146 | 
| Conread position: | 341-552 | 
| Cow position: | chr3:27286499-27286717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 119, 0 | 
| Conread position: | 341-552 | 
| Cow position: | chr3:65308475-65308253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 21, 65 | 
| Conread position: | 341-552 | 
| Cow position: | chr3:70402625-70402838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 119, 53 | 
| Conread position: | 343-515 | 
| Cow position: | chr3:25289827-25290005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 115, 0 | 
| Conread position: | 343-537 | 
| Cow position: | chr3:84154397-84154589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 5, 40 | 
| Conread position: | 344-481 | 
| Cow position: | chr3:77589497-77589634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 139 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 20, 128 | 
| Conread position: | 344-519 | 
| Cow position: | chr3:62312780-62312964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 101, 42 | 
| Conread position: | 344-519 | 
| Cow position: | chr3:62370039-62370223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 101, 42 | 
| Conread position: | 344-525 | 
| Cow position: | chr3:25735922-25735731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 108, 0 | 
| Conread position: | 344-527 | 
| Cow position: | chr3:25038008-25037829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 93, 151 | 
| Conread position: | 344-527 | 
| Cow position: | chr3:84212548-84212365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 92, 31 | 
| Conread position: | 344-552 | 
| Cow position: | chr3:76056301-76056093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 116, 187 | 
| Conread position: | 346-462 | 
| Cow position: | chr3:35285029-35285145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 347-523 | 
| Cow position: | chr3:63860624-63860440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 347-525 | 
| Cow position: | chr3:41366723-41366528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 347-525 | 
| Cow position: | chr3:59885527-59885703 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 92, 38 | 
| Conread position: | 347-532 | 
| Cow position: | chr3:29807731-29807912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 347-546 | 
| Cow position: | chr3:23640330-23640531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 108, 185 | 
| Conread position: | 347-548 | 
| Cow position: | chr3:7381842-7381639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 87, 24 | 
| Conread position: | 347-551 | 
| Cow position: | chr3:18700124-18699911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 108, 192 | 
| Conread position: | 347-552 | 
| Cow position: | chr3:76168645-76168429 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 348-519 | 
| Cow position: | chr3:28884173-28883996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 107, 68 | 
| Conread position: | 348-527 | 
| Cow position: | chr3:43389140-43388951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 349-524 | 
| Cow position: | chr3:4518192-4518013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 111, 16 | 
| Conread position: | 349-527 | 
| Cow position: | chr3:35802952-35802762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 102, 72 | 
| Conread position: | 349-527 | 
| Cow position: | chr3:41510565-41510752 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 349-527 | 
| Cow position: | chr3:49789592-49789423 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 8, 0 | 
| Conread position: | 349-541 | 
| Cow position: | chr3:44207889-44207689 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 93, 57 | 
| Conread position: | 349-546 | 
| Cow position: | chr3:38331623-38331420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 104, 71 | 
| Conread position: | 350-537 | 
| Cow position: | chr3:23818481-23818671 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 117, 85 | 
| Conread position: | 351-527 | 
| Cow position: | chr3:19709101-19709279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 93, 0 | 
| Conread position: | 352-552 | 
| Cow position: | chr3:81616461-81616251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 108, 0 | 
| Conread position: | 354-449 | 
| Cow position: | chr3:81547097-81547190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 96 | 
| Alignm identity: | 82 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 354-453 | 
| Cow position: | chr3:28556168-28556069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 100 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-525 | 
| Cow position: | chr3:55730475-55730294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 99, 0 | 
| Conread position: | 354-526 | 
| Cow position: | chr3:56943932-56943757 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 109, 148 | 
| Conread position: | 354-527 | 
| Cow position: | chr3:19044772-19044594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 50, 90 | 
| Conread position: | 354-527 | 
| Cow position: | chr3:37641319-37641500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 354-527 | 
| Cow position: | chr3:80958517-80958335 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 101, 33 | 
| Conread position: | 354-531 | 
| Cow position: | chr3:79207709-79207537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 161, 101 | 
| Conread position: | 354-532 | 
| Cow position: | chr3:74069592-74069753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 354-537 | 
| Cow position: | chr3:15859385-15859200 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 85, 71 | 
| Conread position: | 354-545 | 
| Cow position: | chr3:3818778-3818957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 171, 49 | 
| Conread position: | 354-546 | 
| Cow position: | chr3:16362511-16362322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 75, 0 | 
| Conread position: | 354-548 | 
| Cow position: | chr3:79893504-79893299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 73, 66 | 
| Conread position: | 354-551 | 
| Cow position: | chr3:81401103-81400908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 354-552 | 
| Cow position: | chr3:83934719-83934920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 99, 178 | 
| Conread position: | 355-522 | 
| Cow position: | chr3:12899945-12899777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 108, 40 | 
| Conread position: | 355-525 | 
| Cow position: | chr3:29234687-29234506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 14, 159 | 
| Conread position: | 355-527 | 
| Cow position: | chr3:32436631-32436812 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 103, 17 | 
| Conread position: | 355-535 | 
| Cow position: | chr3:22868725-22868534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 355-544 | 
| Cow position: | chr3:17531743-17531550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 90, 171 | 
| Conread position: | 355-551 | 
| Cow position: | chr3:70333226-70333032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 73, 27 | 
| Conread position: | 356-518 | 
| Cow position: | chr3:27670409-27670571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 147, 160 | 
| Conread position: | 356-527 | 
| Cow position: | chr3:83671851-83672029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 104, 73 | 
| Conread position: | 357-527 | 
| Cow position: | chr3:23037512-23037334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 71, 63 | 
| Conread position: | 357-527 | 
| Cow position: | chr3:26393304-26393125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 357-550 | 
| Cow position: | chr3:76300767-76300971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 358-546 | 
| Cow position: | chr3:2016433-2016625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 361-522 | 
| Cow position: | chr3:73514047-73513894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 361-524 | 
| Cow position: | chr3:77653929-77654091 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 361-546 | 
| Cow position: | chr3:4071769-4071578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 99, 7 | 
| Conread position: | 362-523 | 
| Cow position: | chr3:3401549-3401711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 100, 81 | 
| Conread position: | 362-524 | 
| Cow position: | chr3:22903754-22903587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 19, 0 | 
| Conread position: | 362-534 | 
| Cow position: | chr3:562792-562608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 363-455 | 
| Cow position: | chr3:20719307-20719215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 93 | 
| Alignm identity: | 79 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 363-526 | 
| Cow position: | chr3:34164281-34164115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 58, 9 | 
| Conread position: | 363-527 | 
| Cow position: | chr3:43896057-43895889 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 363-537 | 
| Cow position: | chr3:26977537-26977721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 44, 147 | 
| Conread position: | 364-535 | 
| Cow position: | chr3:74050698-74050524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 0 | 
| Conread position: | 365-552 | 
| Cow position: | chr3:15070104-15069928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 365-552 | 
| Cow position: | chr3:22094594-22094417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 365-552 | 
| Cow position: | chr3:24774658-24774842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 64, 130 | 
| Conread position: | 366-527 | 
| Cow position: | chr3:23804511-23804676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 87, 138 | 
| Conread position: | 366-527 | 
| Cow position: | chr3:25082412-25082263 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 366-528 | 
| Cow position: | chr3:5737757-5737919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 92, 37 | 
| Conread position: | 366-529 | 
| Cow position: | chr3:23753497-23753660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 87, 21 | 
| Conread position: | 366-537 | 
| Cow position: | chr3:3453585-3453766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 90, 0 | 
| Conread position: | 366-550 | 
| Cow position: | chr3:19611346-19611153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 366-551 | 
| Cow position: | chr3:64910090-64909900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 76, 170 | 
| Conread position: | 366-552 | 
| Cow position: | chr3:68565827-68566009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 92, 39 | 
| Conread position: | 367-544 | 
| Cow position: | chr3:12637516-12637697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 98, 0 | 
| Conread position: | 367-546 | 
| Cow position: | chr3:34392213-34392033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 25, 19 | 
| Conread position: | 368-526 | 
| Cow position: | chr3:56103671-56103828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 95, 58 | 
| Conread position: | 368-552 | 
| Cow position: | chr3:11607830-11608013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 87, 33 | 
| Conread position: | 369-527 | 
| Cow position: | chr3:77098814-77098650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 85, 0 | 
| Conread position: | 371-524 | 
| Cow position: | chr3:40958116-40957957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 371-550 | 
| Cow position: | chr3:14211972-14211791 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 84, 162 | 
| Conread position: | 371-551 | 
| Cow position: | chr3:68624228-68624420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 372-516 | 
| Cow position: | chr3:10115310-10115458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 82, 34 | 
| Conread position: | 372-546 | 
| Cow position: | chr3:70264199-70264035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 93, 0 | 
| Conread position: | 372-547 | 
| Cow position: | chr3:44782351-44782535 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 372-550 | 
| Cow position: | chr3:57641812-57641998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 84, 20 | 
| Conread position: | 373-552 | 
| Cow position: | chr3:82425066-82424881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 80, 152 | 
| Conread position: | 374-547 | 
| Cow position: | chr3:44594635-44594815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 84, 155 | 
| Conread position: | 375-527 | 
| Cow position: | chr3:2636964-2637119 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 83, 118 | 
| Conread position: | 375-534 | 
| Cow position: | chr3:49787574-49787736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 81, 5 | 
| Conread position: | 375-548 | 
| Cow position: | chr3:83680648-83680811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 32, 46 | 
| Conread position: | 379-527 | 
| Cow position: | chr3:59635331-59635477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 380-527 | 
| Cow position: | chr3:44724881-44725042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 380-537 | 
| Cow position: | chr3:77665531-77665367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 83, 12 | 
| Conread position: | 382-511 | 
| Cow position: | chr3:72556791-72556923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 133 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 382-527 | 
| Cow position: | chr3:45168590-45168736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 383-524 | 
| Cow position: | chr3:43527761-43527623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 74, 0 | 
| Conread position: | 383-543 | 
| Cow position: | chr3:77227830-77227995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 12, 111 | 
| Conread position: | 385-533 | 
| Cow position: | chr3:75907936-75908091 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 10, 0 | 
| Conread position: | 386-535 | 
| Cow position: | chr3:61211431-61211284 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 37, 112 | 
| Conread position: | 386-550 | 
| Cow position: | chr3:69849267-69849100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 42, 34 | 
| Conread position: | 392-527 | 
| Cow position: | chr3:20660132-20660004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 393-535 | 
| Cow position: | chr3:24370434-24370573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 103, 0 | 
| Conread position: | 394-527 | 
| Cow position: | chr3:15689308-15689181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 399-535 | 
| Cow position: | chr3:39967450-39967314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 54, 101 | 
| Conread position: | 400-513 | 
| Cow position: | chr3:37848809-37848696 (view UCSC Genome Browser custom track) | 
| Alignm length: | 114 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 407-543 | 
| Cow position: | chr3:41826286-41826148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 54, 126 | 
| Conread position: | 416-531 | 
| Cow position: | chr3:61190475-61190355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 416-535 | 
| Cow position: | chr3:49369667-49369791 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 418-524 | 
| Cow position: | chr3:35168239-35168132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 108 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 419-527 | 
| Cow position: | chr3:17401437-17401548 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 423-532 | 
| Cow position: | chr3:15952364-15952472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 5, 38 | 
| Conread position: | 427-527 | 
| Cow position: | chr3:81337297-81337394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 101 | 
| Alignm identity: | 85 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 26, 0 | 
| Conread position: | 460-546 | 
| Cow position: | chr3:27670580-27670666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 87 | 
| Alignm identity: | 77 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
Show alignments to all cow chromosomes.
