Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rfbs3918b_e17.5
        

               Conread position:
               7-264
               

               Cow position:
               chr4:41598983-41599247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               7-527
               

               Cow position:
               chr4:30779168-30778629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 269
               

               Conread position:
               12-265
               

               Cow position:
               chr4:26908791-26908534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               56, 21
               

               Conread position:
               12-266
               

               Cow position:
               chr4:5610397-5610145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 27
               

               Conread position:
               12-373
               

               Cow position:
               chr4:24458427-24458073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 93
               

               Conread position:
               12-454
               

               Cow position:
               chr4:41441237-41441676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 181
               

               Conread position:
               13-229
               

               Cow position:
               chr4:53701212-53701419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               66, 93
               

               Conread position:
               13-546
               

               Cow position:
               chr4:21258896-21259414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               343
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               10, 51
               

               Conread position:
               17-218
               

               Cow position:
               chr4:28094771-28094579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               6, 108
               

               Conread position:
               21-217
               

               Cow position:
               chr4:19742287-19742096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               25-234
               

               Cow position:
               chr4:18522145-18521939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               33, 41
               

               Conread position:
               25-256
               

               Cow position:
               chr4:48182399-48182635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               10, 108
               

               Conread position:
               25-256
               

               Cow position:
               chr4:62567094-62567327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               53, 24
               

               Conread position:
               25-543
               

               Cow position:
               chr4:10034587-10035107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               338
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               28, 167
               

               Conread position:
               25-552
               

               Cow position:
               chr4:4085452-4084896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 120
               

               Conread position:
               26-264
               

               Cow position:
               chr4:10026174-10026405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               52, 147
               

               Conread position:
               26-462
               

               Cow position:
               chr4:17052908-17052474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 25
               

               Conread position:
               27-269
               

               Cow position:
               chr4:15848024-15848269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               51, 11
               

               Conread position:
               27-350
               

               Cow position:
               chr4:54974998-54975303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               15, 36
               

               Conread position:
               27-424
               

               Cow position:
               chr4:620461-620054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 25
               

               Conread position:
               29-167
               

               Cow position:
               chr4:48212792-48212647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               29-264
               

               Cow position:
               chr4:11090999-11090770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               27, 76
               

               Conread position:
               29-395
               

               Cow position:
               chr4:19141976-19142328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 76
               

               Conread position:
               29-490
               

               Cow position:
               chr4:38999115-38999578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 75
               

               Conread position:
               29-527
               

               Cow position:
               chr4:9166047-9165532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               329
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               30, 64
               

               Conread position:
               29-552
               

               Cow position:
               chr4:34166284-34165772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 88
               

               Conread position:
               32-462
               

               Cow position:
               chr4:41186219-41185801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 20
               

               Conread position:
               34-391
               

               Cow position:
               chr4:24688654-24688297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               15, 19
               

               Conread position:
               34-489
               

               Cow position:
               chr4:54190793-54191234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 71
               

               Conread position:
               35-193
               

               Cow position:
               chr4:23578637-23578795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               18, 48
               

               Conread position:
               36-217
               

               Cow position:
               chr4:3274838-3274660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               22, 30
               

               Conread position:
               36-430
               

               Cow position:
               chr4:40623387-40623016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               267
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               20, 77
               

               Conread position:
               36-448
               

               Cow position:
               chr4:5461157-5460757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 30
               

               Conread position:
               41-409
               

               Cow position:
               chr4:39455755-39456105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               37, 134
               

               Conread position:
               42-228
               

               Cow position:
               chr4:49001598-49001409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               36, 8
               

               Conread position:
               42-261
               

               Cow position:
               chr4:10036228-10036447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               36, 64
               

               Conread position:
               42-377
               

               Cow position:
               chr4:37828135-37827815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               32, 113
               

               Conread position:
               42-522
               

               Cow position:
               chr4:7704598-7704131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               328
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               176, 14
               

               Conread position:
               43-152
               

               Cow position:
               chr4:17186817-17186708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               91
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               43-220
               

               Cow position:
               chr4:55508709-55508538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               43-222
               

               Cow position:
               chr4:34347335-34347154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               43-222
               

               Cow position:
               chr4:41833559-41833385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               43-225
               

               Cow position:
               chr4:26009149-26009333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               149
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               43-225
               

               Cow position:
               chr4:65450217-65450033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               25, 165
               

               Conread position:
               43-232
               

               Cow position:
               chr4:8692456-8692270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               43-256
               

               Cow position:
               chr4:5575826-5576048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               43-264
               

               Cow position:
               chr4:2263051-2262826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               35, 140
               

               Conread position:
               43-265
               

               Cow position:
               chr4:12700651-12700417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               37, 139
               

               Conread position:
               43-265
               

               Cow position:
               chr4:53545732-53545953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               35, 123
               

               Conread position:
               43-269
               

               Cow position:
               chr4:23655697-23655925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               35, 70
               

               Conread position:
               43-358
               

               Cow position:
               chr4:32405222-32405538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               35, 233
               

               Conread position:
               43-362
               

               Cow position:
               chr4:19306959-19307280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 60
               

               Conread position:
               43-404
               

               Cow position:
               chr4:39231820-39231460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 120
               

               Conread position:
               43-412
               

               Cow position:
               chr4:11021947-11021582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               256
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               35, 23
               

               Conread position:
               43-448
               

               Cow position:
               chr4:20629-21017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 39
               

               Conread position:
               43-462
               

               Cow position:
               chr4:44782077-44782493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 118
               

               Conread position:
               43-494
               

               Cow position:
               chr4:6653443-6653881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               317
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               154, 42
               

               Conread position:
               43-552
               

               Cow position:
               chr4:53752220-53752725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               331
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               175, 38
               

               Conread position:
               44-197
               

               Cow position:
               chr4:61450472-61450624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               33, 130
               

               Conread position:
               44-220
               

               Cow position:
               chr4:20666741-20666919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               44-225
               

               Cow position:
               chr4:65116507-65116325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               23, 58
               

               Conread position:
               44-229
               

               Cow position:
               chr4:51289416-51289608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               44-233
               

               Cow position:
               chr4:62673980-62674163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               77, 15
               

               Conread position:
               44-235
               

               Cow position:
               chr4:40056671-40056865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               44-247
               

               Cow position:
               chr4:28234507-28234301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               44-261
               

               Cow position:
               chr4:61304720-61304498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               171
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               44-263
               

               Cow position:
               chr4:26163269-26163050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               25, 134
               

               Conread position:
               44-265
               

               Cow position:
               chr4:6465808-6466033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               44-265
               

               Cow position:
               chr4:26399036-26399262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               44-266
               

               Cow position:
               chr4:4277455-4277228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               44-349
               

               Cow position:
               chr4:48137618-48137918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 49
               

               Conread position:
               44-349
               

               Cow position:
               chr4:56233395-56233688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 59
               

               Conread position:
               44-353
               

               Cow position:
               chr4:43370146-43369836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               226
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               34, 128
               

               Conread position:
               44-358
               

               Cow position:
               chr4:22051763-22051458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               228
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               248, 90
               

               Conread position:
               44-367
               

               Cow position:
               chr4:5883137-5883461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               35, 232
               

               Conread position:
               44-397
               

               Cow position:
               chr4:62950906-62951259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               34, 227
               

               Conread position:
               44-398
               

               Cow position:
               chr4:19534188-19534543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               34, 258
               

               Conread position:
               44-398
               

               Cow position:
               chr4:48736540-48736895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               34, 196
               

               Conread position:
               44-411
               

               Cow position:
               chr4:34171865-34171514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               257
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               34, 103
               

               Conread position:
               44-427
               

               Cow position:
               chr4:8678464-8678849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               34, 229
               

               Conread position:
               44-440
               

               Cow position:
               chr4:28613525-28613923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 255
               

               Conread position:
               44-446
               

               Cow position:
               chr4:17379112-17378733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               365, 129
               

               Conread position:
               44-454
               

               Cow position:
               chr4:43148108-43148522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 283
               

               Conread position:
               44-454
               

               Cow position:
               chr4:44839181-44838784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 128
               

               Conread position:
               44-525
               

               Cow position:
               chr4:15904805-15905294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 21
               

               Conread position:
               44-549
               

               Cow position:
               chr4:2893729-2894251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 14
               

               Conread position:
               44-550
               

               Cow position:
               chr4:42672875-42673387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 261
               

               Conread position:
               45-181
               

               Cow position:
               chr4:623676-623541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               33, 68
               

               Conread position:
               45-188
               

               Cow position:
               chr4:41975960-41975817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               30, 7
               

               Conread position:
               45-198
               

               Cow position:
               chr4:54171073-54171223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               45-220
               

               Cow position:
               chr4:6034386-6034209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               45-220
               

               Cow position:
               chr4:12557784-12557610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               33, 58
               

               Conread position:
               45-220
               

               Cow position:
               chr4:12657959-12658134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               32, 63
               

               Conread position:
               45-220
               

               Cow position:
               chr4:29811865-29811687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               45-220
               

               Cow position:
               chr4:56177521-56177699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               22, 64
               

               Conread position:
               45-221
               

               Cow position:
               chr4:44635228-44635406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               45-225
               

               Cow position:
               chr4:38945750-38945928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               149
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               33, 128
               

               Conread position:
               45-228
               

               Cow position:
               chr4:22567589-22567763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               45-231
               

               Cow position:
               chr4:68941744-68941560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               34, 130
               

               Conread position:
               45-264
               

               Cow position:
               chr4:46274898-46275116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 128
               

               Conread position:
               45-265
               

               Cow position:
               chr4:7249864-7249644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               33, 122
               

               Conread position:
               45-265
               

               Cow position:
               chr4:19561400-19561609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               23, 42
               

               Conread position:
               45-266
               

               Cow position:
               chr4:58283392-58283170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               33, 95
               

               Conread position:
               45-268
               

               Cow position:
               chr4:58857029-58856806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               177, 23
               

               Conread position:
               45-304
               

               Cow position:
               chr4:14159419-14159162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               34, 124
               

               Conread position:
               45-350
               

               Cow position:
               chr4:22215951-22215646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 72
               

               Conread position:
               45-358
               

               Cow position:
               chr4:30690430-30690730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               34, 13
               

               Conread position:
               45-393
               

               Cow position:
               chr4:33421656-33421316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               242
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               36, 58
               

               Conread position:
               45-395
               

               Cow position:
               chr4:13271853-13272194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               252
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               32, 161
               

               Conread position:
               45-395
               

               Cow position:
               chr4:67444850-67445197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               33, 68
               

               Conread position:
               45-402
               

               Cow position:
               chr4:637703-638059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               242
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               33, 58
               

               Conread position:
               45-407
               

               Cow position:
               chr4:14470863-14470506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 59
               

               Conread position:
               45-412
               

               Cow position:
               chr4:22528682-22528319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               254
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               33, 58
               

               Conread position:
               45-413
               

               Cow position:
               chr4:10037115-10037486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               243
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               33, 265
               

               Conread position:
               45-413
               

               Cow position:
               chr4:24744710-24744336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 103
               

               Conread position:
               45-433
               

               Cow position:
               chr4:16602348-16601973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 60
               

               Conread position:
               45-449
               

               Cow position:
               chr4:45589882-45589495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               289
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               18, 61
               

               Conread position:
               45-452
               

               Cow position:
               chr4:53100511-53100910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 61
               

               Conread position:
               45-455
               

               Cow position:
               chr4:1495696-1495297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 104
               

               Conread position:
               45-456
               

               Cow position:
               chr4:25879102-25879503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 15
               

               Conread position:
               45-523
               

               Cow position:
               chr4:32260142-32259653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 102
               

               Conread position:
               45-524
               

               Cow position:
               chr4:509193-508725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 112
               

               Conread position:
               45-525
               

               Cow position:
               chr4:570501-570976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 65
               

               Conread position:
               45-525
               

               Cow position:
               chr4:22101562-22101073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 248
               

               Conread position:
               45-525
               

               Cow position:
               chr4:42424096-42423620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 58
               

               Conread position:
               45-527
               

               Cow position:
               chr4:12464551-12465027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 161
               

               Conread position:
               45-527
               

               Cow position:
               chr4:47730576-47731054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 7
               

               Conread position:
               45-527
               

               Cow position:
               chr4:65919327-65919808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 23
               

               Conread position:
               45-527
               

               Cow position:
               chr4:66256391-66256869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 18
               

               Conread position:
               45-546
               

               Cow position:
               chr4:51898707-51899230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 238
               

               Conread position:
               45-548
               

               Cow position:
               chr4:58834701-58834205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 211
               

               Conread position:
               46-157
               

               Cow position:
               chr4:54494544-54494656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               92
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               33, 57
               

               Conread position:
               46-233
               

               Cow position:
               chr4:29710330-29710143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               19, 129
               

               Conread position:
               46-241
               

               Cow position:
               chr4:45724323-45724514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               25, 41
               

               Conread position:
               46-264
               

               Cow position:
               chr4:8649952-8650164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               6, 33
               

               Conread position:
               46-264
               

               Cow position:
               chr4:61391495-61391280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               175
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               31, 55
               

               Conread position:
               46-274
               

               Cow position:
               chr4:61721166-61720943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               12, 56
               

               Conread position:
               46-366
               

               Cow position:
               chr4:61972769-61972440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               36, 260
               

               Conread position:
               46-542
               

               Cow position:
               chr4:22138530-22138010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               47-229
               

               Cow position:
               chr4:23535956-23536138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               19, 5
               

               Conread position:
               47-265
               

               Cow position:
               chr4:15283073-15283292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               171, 15
               

               Conread position:
               47-537
               

               Cow position:
               chr4:3687635-3688127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 125
               

               Conread position:
               48-171
               

               Cow position:
               chr4:14736202-14736327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               100
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               48-187
               

               Cow position:
               chr4:36971230-36971089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               48-218
               

               Cow position:
               chr4:9606-9442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               48-265
               

               Cow position:
               chr4:59888898-59888671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               22, 172
               

               Conread position:
               48-453
               

               Cow position:
               chr4:42480894-42481291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 7
               

               Conread position:
               48-524
               

               Cow position:
               chr4:21392097-21391632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 56
               

               Conread position:
               48-527
               

               Cow position:
               chr4:45662792-45662326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 120
               

               Conread position:
               48-537
               

               Cow position:
               chr4:30974045-30974533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 55
               

               Conread position:
               49-152
               

               Cow position:
               chr4:22906749-22906852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               104
               

               Alignm identity:
               91
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               49-152
               

               Cow position:
               chr4:46435157-46435262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               49-152
               

               Cow position:
               chr4:48142489-48142594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               87
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               49-154
               

               Cow position:
               chr4:46069012-46069120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               93
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               49-157
               

               Cow position:
               chr4:19308191-19308300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               90
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-170
               

               Cow position:
               chr4:19502093-19501968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-187
               

               Cow position:
               chr4:33090038-33089896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-194
               

               Cow position:
               chr4:34223601-34223744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               29, 59
               

               Conread position:
               49-198
               

               Cow position:
               chr4:14754780-14754628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               49-199
               

               Cow position:
               chr4:38067592-38067744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-204
               

               Cow position:
               chr4:20117139-20116992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-205
               

               Cow position:
               chr4:47047449-47047611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               49-205
               

               Cow position:
               chr4:48409850-48409689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-211
               

               Cow position:
               chr4:52979661-52979498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-214
               

               Cow position:
               chr4:50194201-50194362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               30, 107
               

               Conread position:
               49-215
               

               Cow position:
               chr4:55084474-55084302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 168
               

               Conread position:
               49-216
               

               Cow position:
               chr4:359549-359719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               49-216
               

               Cow position:
               chr4:5577781-5577614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               30, 133
               

               Conread position:
               49-216
               

               Cow position:
               chr4:5777323-5777161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               24, 120
               

               Conread position:
               49-219
               

               Cow position:
               chr4:52584673-52584504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               30, 125
               

               Conread position:
               49-220
               

               Cow position:
               chr4:2190635-2190462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:3354279-3354106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:8202924-8202751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:11930633-11930804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               30, 108
               

               Conread position:
               49-220
               

               Cow position:
               chr4:12018266-12018439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:12237582-12237409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:17282855-17282682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:17616405-17616578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:18519437-18519609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 11
               

               Conread position:
               49-220
               

               Cow position:
               chr4:20025303-20025476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               29, 82
               

               Conread position:
               49-220
               

               Cow position:
               chr4:27466404-27466577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               24, 157
               

               Conread position:
               49-220
               

               Cow position:
               chr4:29114325-29114152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:29527467-29527295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               20, 131
               

               Conread position:
               49-220
               

               Cow position:
               chr4:33372103-33371930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:39006667-39006840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               29, 83
               

               Conread position:
               49-220
               

               Cow position:
               chr4:44029960-44029791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               30, 77
               

               Conread position:
               49-220
               

               Cow position:
               chr4:48030524-48030697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:49409174-49409347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               141
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:51830546-51830720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:52771351-52771523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:54757605-54757436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 82
               

               Conread position:
               49-220
               

               Cow position:
               chr4:56226596-56226765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               19, 120
               

               Conread position:
               49-220
               

               Cow position:
               chr4:60907585-60907412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-220
               

               Cow position:
               chr4:63251215-63251042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 120
               

               Conread position:
               49-220
               

               Cow position:
               chr4:64875763-64875934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               29, 152
               

               Conread position:
               49-220
               

               Cow position:
               chr4:69018077-69018245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-222
               

               Cow position:
               chr4:41897005-41896833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               29, 58
               

               Conread position:
               49-222
               

               Cow position:
               chr4:46710939-46710764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 103
               

               Conread position:
               49-223
               

               Cow position:
               chr4:43895828-43895651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-223
               

               Cow position:
               chr4:60433154-60432977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-224
               

               Cow position:
               chr4:5440994-5440816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 83
               

               Conread position:
               49-229
               

               Cow position:
               chr4:5915892-5916074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               16, 176
               

               Conread position:
               49-229
               

               Cow position:
               chr4:20090858-20090681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               12, 59
               

               Conread position:
               49-229
               

               Cow position:
               chr4:39273917-39274098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               28, 103
               

               Conread position:
               49-234
               

               Cow position:
               chr4:38309426-38309244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               29, 121
               

               Conread position:
               49-236
               

               Cow position:
               chr4:20562325-20562516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-238
               

               Cow position:
               chr4:21553473-21553280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-249
               

               Cow position:
               chr4:21246855-21246654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               29, 126
               

               Conread position:
               49-250
               

               Cow position:
               chr4:26469353-26469556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               29, 158
               

               Conread position:
               49-251
               

               Cow position:
               chr4:38845310-38845512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               29, 163
               

               Conread position:
               49-251
               

               Cow position:
               chr4:41097629-41097829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               29, 78
               

               Conread position:
               49-252
               

               Cow position:
               chr4:22072964-22072758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               170
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 131
               

               Conread position:
               49-253
               

               Cow position:
               chr4:10996432-10996228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               18, 35
               

               Conread position:
               49-253
               

               Cow position:
               chr4:61999743-61999546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               30, 13
               

               Conread position:
               49-255
               

               Cow position:
               chr4:4736746-4736946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               21, 56
               

               Conread position:
               49-256
               

               Cow position:
               chr4:26175534-26175325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               29, 134
               

               Conread position:
               49-260
               

               Cow position:
               chr4:23060297-23060076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-260
               

               Cow position:
               chr4:23382096-23381890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               30, 98
               

               Conread position:
               49-260
               

               Cow position:
               chr4:25906617-25906410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               27, 9
               

               Conread position:
               49-260
               

               Cow position:
               chr4:27510980-27511183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               29, 123
               

               Conread position:
               49-261
               

               Cow position:
               chr4:18331753-18331970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-262
               

               Cow position:
               chr4:1915866-1915656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               17, 26
               

               Conread position:
               49-263
               

               Cow position:
               chr4:54571898-54571678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-264
               

               Cow position:
               chr4:10024994-10025200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               29, 55
               

               Conread position:
               49-264
               

               Cow position:
               chr4:18186733-18186513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 84
               

               Conread position:
               49-264
               

               Cow position:
               chr4:38864718-38864937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 114
               

               Conread position:
               49-264
               

               Cow position:
               chr4:42232377-42232582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               92, 35
               

               Conread position:
               49-264
               

               Cow position:
               chr4:43543025-43542812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               30, 176
               

               Conread position:
               49-264
               

               Cow position:
               chr4:53830141-53830361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 117
               

               Conread position:
               49-264
               

               Cow position:
               chr4:66918605-66918834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               25, 182
               

               Conread position:
               49-264
               

               Cow position:
               chr4:67600016-67599813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               175, 37
               

               Conread position:
               49-265
               

               Cow position:
               chr4:1007557-1007776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 151
               

               Conread position:
               49-265
               

               Cow position:
               chr4:2244279-2244061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               30, 83
               

               Conread position:
               49-265
               

               Cow position:
               chr4:3170978-3171197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               29, 108
               

               Conread position:
               49-265
               

               Cow position:
               chr4:8439734-8439513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-265
               

               Cow position:
               chr4:14513528-14513311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               166, 10
               

               Conread position:
               49-265
               

               Cow position:
               chr4:27337877-27338096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 101
               

               Conread position:
               49-265
               

               Cow position:
               chr4:44777524-44777303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               29, 59
               

               Conread position:
               49-265
               

               Cow position:
               chr4:47502170-47502391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-265
               

               Cow position:
               chr4:61271920-61271704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               169, 16
               

               Conread position:
               49-265
               

               Cow position:
               chr4:65168296-65168081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               170
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               29, 16
               

               Conread position:
               49-266
               

               Cow position:
               chr4:533949-534171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-266
               

               Cow position:
               chr4:12653997-12653777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 162
               

               Conread position:
               49-266
               

               Cow position:
               chr4:17032834-17032612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 83
               

               Conread position:
               49-266
               

               Cow position:
               chr4:37707488-37707266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-266
               

               Cow position:
               chr4:58292396-58292620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-266
               

               Cow position:
               chr4:59383798-59383574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-266
               

               Cow position:
               chr4:60135021-60135243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-269
               

               Cow position:
               chr4:7080556-7080781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-269
               

               Cow position:
               chr4:10397696-10397921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-269
               

               Cow position:
               chr4:10425144-10425369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-269
               

               Cow position:
               chr4:14967746-14967971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-269
               

               Cow position:
               chr4:17500240-17500015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-269
               

               Cow position:
               chr4:34644070-34643844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-269
               

               Cow position:
               chr4:42596908-42597133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-269
               

               Cow position:
               chr4:46021257-46021482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               49-269
               

               Cow position:
               chr4:59781403-59781626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               29, 214
               

               Conread position:
               49-296
               

               Cow position:
               chr4:69305365-69305606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 53
               

               Conread position:
               49-299
               

               Cow position:
               chr4:56514226-56513985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 19
               

               Conread position:
               49-321
               

               Cow position:
               chr4:39009678-39009946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               41, 54
               

               Conread position:
               49-335
               

               Cow position:
               chr4:16637889-16637612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               49-336
               

               Cow position:
               chr4:53832760-53833039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               29, 53
               

               Conread position:
               49-349
               

               Cow position:
               chr4:53999811-53999504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               29, 137
               

               Conread position:
               49-349
               

               Cow position:
               chr4:61215289-61214989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               29, 111
               

               Conread position:
               49-351
               

               Cow position:
               chr4:14048091-14048394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-351
               

               Cow position:
               chr4:15618361-15618664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-351
               

               Cow position:
               chr4:26538331-26538634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-351
               

               Cow position:
               chr4:34996883-34997186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               28, 227
               

               Conread position:
               49-351
               

               Cow position:
               chr4:54540710-54541013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-356
               

               Cow position:
               chr4:9005986-9006294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               30, 253
               

               Conread position:
               49-357
               

               Cow position:
               chr4:480298-479994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 126
               

               Conread position:
               49-358
               

               Cow position:
               chr4:4487854-4488164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-358
               

               Cow position:
               chr4:6232025-6232335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-358
               

               Cow position:
               chr4:7584780-7585090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-358
               

               Cow position:
               chr4:9041614-9041924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-358
               

               Cow position:
               chr4:10420908-10421218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-358
               

               Cow position:
               chr4:15793766-15794076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 72
               

               Conread position:
               49-358
               

               Cow position:
               chr4:15803048-15803358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 72
               

               Conread position:
               49-358
               

               Cow position:
               chr4:25865226-25865536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-358
               

               Cow position:
               chr4:28855777-28856087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-358
               

               Cow position:
               chr4:33593332-33593643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               29, 185
               

               Conread position:
               49-358
               

               Cow position:
               chr4:36350520-36350830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 237
               

               Conread position:
               49-358
               

               Cow position:
               chr4:40229736-40230046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-358
               

               Cow position:
               chr4:42865674-42865980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 175
               

               Conread position:
               49-358
               

               Cow position:
               chr4:45377126-45377436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 216
               

               Conread position:
               49-358
               

               Cow position:
               chr4:47056734-47057050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               29, 237
               

               Conread position:
               49-358
               

               Cow position:
               chr4:52186727-52187037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-358
               

               Cow position:
               chr4:59838967-59839277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-358
               

               Cow position:
               chr4:60856390-60856706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 237
               

               Conread position:
               49-358
               

               Cow position:
               chr4:64156395-64156705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-362
               

               Cow position:
               chr4:18106068-18105755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-362
               

               Cow position:
               chr4:35144959-35145269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               28, 16
               

               Conread position:
               49-364
               

               Cow position:
               chr4:17752476-17752792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               29, 82
               

               Conread position:
               49-364
               

               Cow position:
               chr4:29515648-29515962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 228
               

               Conread position:
               49-364
               

               Cow position:
               chr4:48894240-48894556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-365
               

               Cow position:
               chr4:5984336-5984024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 214
               

               Conread position:
               49-367
               

               Cow position:
               chr4:13835009-13835328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-367
               

               Cow position:
               chr4:50802299-50802618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-367
               

               Cow position:
               chr4:52017141-52016832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-367
               

               Cow position:
               chr4:54962511-54962830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-368
               

               Cow position:
               chr4:47773923-47773612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               29, 55
               

               Conread position:
               49-372
               

               Cow position:
               chr4:42399550-42399226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-373
               

               Cow position:
               chr4:24140552-24140877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-377
               

               Cow position:
               chr4:37620178-37619854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 45
               

               Conread position:
               49-387
               

               Cow position:
               chr4:285366-285686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               236
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               169, 69
               

               Conread position:
               49-395
               

               Cow position:
               chr4:38799483-38799149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               29, 55
               

               Conread position:
               49-396
               

               Cow position:
               chr4:44956494-44956129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               252
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               29, 271
               

               Conread position:
               49-397
               

               Cow position:
               chr4:162747-163095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               227
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               29, 233
               

               Conread position:
               49-397
               

               Cow position:
               chr4:10123073-10123426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-397
               

               Cow position:
               chr4:18738077-18737728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               29, 83
               

               Conread position:
               49-397
               

               Cow position:
               chr4:44493875-44493527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               30, 236
               

               Conread position:
               49-397
               

               Cow position:
               chr4:50808204-50808553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               225
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               29, 226
               

               Conread position:
               49-398
               

               Cow position:
               chr4:4772378-4772728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               30, 227
               

               Conread position:
               49-398
               

               Cow position:
               chr4:17822196-17822546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 253
               

               Conread position:
               49-398
               

               Cow position:
               chr4:47116968-47117318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-401
               

               Cow position:
               chr4:42616851-42617204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 227
               

               Conread position:
               49-402
               

               Cow position:
               chr4:23610659-23611018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               29, 222
               

               Conread position:
               49-402
               

               Cow position:
               chr4:30219971-30219609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               29, 222
               

               Conread position:
               49-402
               

               Cow position:
               chr4:37553335-37552965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               262
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               29, 249
               

               Conread position:
               49-402
               

               Cow position:
               chr4:48411243-48410889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 234
               

               Conread position:
               49-409
               

               Cow position:
               chr4:68362648-68362987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               29, 130
               

               Conread position:
               49-410
               

               Cow position:
               chr4:25806608-25806966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 120
               

               Conread position:
               49-411
               

               Cow position:
               chr4:9136986-9137347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-411
               

               Cow position:
               chr4:10703976-10703620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 220
               

               Conread position:
               49-418
               

               Cow position:
               chr4:4672624-4672261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               168, 209
               

               Conread position:
               49-419
               

               Cow position:
               chr4:57584519-57584166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               263
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               29, 82
               

               Conread position:
               49-420
               

               Cow position:
               chr4:14742968-14743328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               263
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               30, 114
               

               Conread position:
               49-423
               

               Cow position:
               chr4:18602548-18602180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 73
               

               Conread position:
               49-426
               

               Cow position:
               chr4:1822780-1823159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               30, 234
               

               Conread position:
               49-431
               

               Cow position:
               chr4:17112169-17111786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 115
               

               Conread position:
               49-434
               

               Cow position:
               chr4:33935429-33935823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               28, 222
               

               Conread position:
               49-449
               

               Cow position:
               chr4:65815983-65815602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               269
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               36, 112
               

               Conread position:
               49-451
               

               Cow position:
               chr4:24002260-24001860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 92
               

               Conread position:
               49-452
               

               Cow position:
               chr4:8133825-8133432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               275
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               29, 85
               

               Conread position:
               49-452
               

               Cow position:
               chr4:11872203-11871813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 225
               

               Conread position:
               49-452
               

               Cow position:
               chr4:27755596-27755195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 128
               

               Conread position:
               49-453
               

               Cow position:
               chr4:37703975-37704375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-453
               

               Cow position:
               chr4:46059032-46058667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               301
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               21, 55
               

               Conread position:
               49-454
               

               Cow position:
               chr4:10905748-10905359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 112
               

               Conread position:
               49-455
               

               Cow position:
               chr4:46477229-46476834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 183
               

               Conread position:
               49-456
               

               Cow position:
               chr4:19582907-19582505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 108
               

               Conread position:
               49-456
               

               Cow position:
               chr4:64039821-64040227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               293
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               56, 21
               

               Conread position:
               49-459
               

               Cow position:
               chr4:38952268-38952669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 54
               

               Conread position:
               49-461
               

               Cow position:
               chr4:26400666-26401072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-461
               

               Cow position:
               chr4:48961781-48961368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 223
               

               Conread position:
               49-462
               

               Cow position:
               chr4:12903526-12903939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 10
               

               Conread position:
               49-462
               

               Cow position:
               chr4:33433547-33433139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 52
               

               Conread position:
               49-462
               

               Cow position:
               chr4:65650412-65650014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 16
               

               Conread position:
               49-463
               

               Cow position:
               chr4:45644604-45644199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 222
               

               Conread position:
               49-488
               

               Cow position:
               chr4:62772226-62771778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 258
               

               Conread position:
               49-506
               

               Cow position:
               chr4:12003932-12004387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 124
               

               Conread position:
               49-511
               

               Cow position:
               chr4:242935-243387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               306
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               36, 54
               

               Conread position:
               49-516
               

               Cow position:
               chr4:7258718-7258251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 230
               

               Conread position:
               49-516
               

               Cow position:
               chr4:22842059-22842512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 140
               

               Conread position:
               49-518
               

               Cow position:
               chr4:8413401-8412946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 101
               

               Conread position:
               49-518
               

               Cow position:
               chr4:68764226-68764700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               328
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               36, 82
               

               Conread position:
               49-523
               

               Cow position:
               chr4:11309335-11309818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               307
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               29, 137
               

               Conread position:
               49-524
               

               Cow position:
               chr4:19597604-19597145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               49-524
               

               Cow position:
               chr4:22010349-22009875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 123
               

               Conread position:
               49-524
               

               Cow position:
               chr4:25972608-25973067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               324
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               28, 74
               

               Conread position:
               49-524
               

               Cow position:
               chr4:28151238-28151697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               305
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               49-524
               

               Cow position:
               chr4:46526708-46527191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               318
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               29, 117
               

               Conread position:
               49-524
               

               Cow position:
               chr4:58707473-58707006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               311
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 13
               

               Conread position:
               49-525
               

               Cow position:
               chr4:60897564-60897106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 124
               

               Conread position:
               49-525
               

               Cow position:
               chr4:68944467-68943993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               314
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               29, 175
               

               Conread position:
               49-526
               

               Cow position:
               chr4:23647134-23646678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 110
               

               Conread position:
               49-526
               

               Cow position:
               chr4:37915620-37915149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 45
               

               Conread position:
               49-527
               

               Cow position:
               chr4:4185830-4186307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               49-527
               

               Cow position:
               chr4:6443365-6442916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               315
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               175, 16
               

               Conread position:
               49-527
               

               Cow position:
               chr4:15872013-15871551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-527
               

               Cow position:
               chr4:23311551-23311098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               328
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               30, 55
               

               Conread position:
               49-527
               

               Cow position:
               chr4:37935572-37935112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 127
               

               Conread position:
               49-527
               

               Cow position:
               chr4:45918742-45919205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 52
               

               Conread position:
               49-527
               

               Cow position:
               chr4:46258190-46258685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               339
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               19, 75
               

               Conread position:
               49-527
               

               Cow position:
               chr4:48485702-48486186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 191
               

               Conread position:
               49-527
               

               Cow position:
               chr4:51850904-51851403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 239
               

               Conread position:
               49-527
               

               Cow position:
               chr4:68076819-68076349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-528
               

               Cow position:
               chr4:30574165-30574652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 112
               

               Conread position:
               49-531
               

               Cow position:
               chr4:33910015-33910450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               330
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               12, 56
               

               Conread position:
               49-532
               

               Cow position:
               chr4:275174-275639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 53
               

               Conread position:
               49-532
               

               Cow position:
               chr4:12591502-12591025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 127
               

               Conread position:
               49-532
               

               Cow position:
               chr4:22236766-22236290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               343
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               26, 118
               

               Conread position:
               49-532
               

               Cow position:
               chr4:33971188-33970710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 126
               

               Conread position:
               49-532
               

               Cow position:
               chr4:49794390-49794845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               49-537
               

               Cow position:
               chr4:10916128-10915633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 51
               

               Conread position:
               49-537
               

               Cow position:
               chr4:13693963-13693476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 34
               

               Conread position:
               49-537
               

               Cow position:
               chr4:17200989-17201459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               328
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               169, 29
               

               Conread position:
               49-537
               

               Cow position:
               chr4:19434970-19435448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 57
               

               Conread position:
               49-541
               

               Cow position:
               chr4:28836241-28836737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 35
               

               Conread position:
               49-545
               

               Cow position:
               chr4:31023152-31023657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 29
               

               Conread position:
               49-546
               

               Cow position:
               chr4:24372142-24371649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 125
               

               Conread position:
               49-547
               

               Cow position:
               chr4:11099956-11099454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 35
               

               Conread position:
               49-548
               

               Cow position:
               chr4:3388257-3388756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 40
               

               Conread position:
               49-549
               

               Cow position:
               chr4:7789-7286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               343
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               29, 248
               

               Conread position:
               49-549
               

               Cow position:
               chr4:19265282-19265787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               49-549
               

               Cow position:
               chr4:61897823-61897339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 28
               

               Conread position:
               49-550
               

               Cow position:
               chr4:351937-352449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               338
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               29, 257
               

               Conread position:
               49-550
               

               Cow position:
               chr4:17833196-17832683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-550
               

               Cow position:
               chr4:27276834-27276332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 125
               

               Conread position:
               49-550
               

               Cow position:
               chr4:51903311-51903819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 139
               

               Conread position:
               49-550
               

               Cow position:
               chr4:59871214-59871691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 15
               

               Conread position:
               49-551
               

               Cow position:
               chr4:10412091-10412563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 17
               

               Conread position:
               49-551
               

               Cow position:
               chr4:21058676-21058168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               49-551
               

               Cow position:
               chr4:23451387-23450879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 124
               

               Conread position:
               49-552
               

               Cow position:
               chr4:15635734-15635238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 85
               

               Conread position:
               49-552
               

               Cow position:
               chr4:19541829-19542349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 259
               

               Conread position:
               49-552
               

               Cow position:
               chr4:53125846-53126311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 60
               

               Conread position:
               50-207
               

               Cow position:
               chr4:47280415-47280260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               93, 15
               

               Conread position:
               50-214
               

               Cow position:
               chr4:32838810-32838644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               50-219
               

               Cow position:
               chr4:43064011-43064182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               50-220
               

               Cow position:
               chr4:20243840-20244012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               50-220
               

               Cow position:
               chr4:24671466-24671296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               50-220
               

               Cow position:
               chr4:29529150-29528979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               28, 152
               

               Conread position:
               50-220
               

               Cow position:
               chr4:66554322-66554152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               28, 58
               

               Conread position:
               50-260
               

               Cow position:
               chr4:14352971-14352751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               29, 73
               

               Conread position:
               50-265
               

               Cow position:
               chr4:11640908-11640690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 107
               

               Conread position:
               50-265
               

               Cow position:
               chr4:24432353-24432567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               28, 57
               

               Conread position:
               50-266
               

               Cow position:
               chr4:46176754-46176533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               50-302
               

               Cow position:
               chr4:49213009-49212753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 250
               

               Conread position:
               50-335
               

               Cow position:
               chr4:13371649-13371946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               26, 126
               

               Conread position:
               50-336
               

               Cow position:
               chr4:65891702-65891985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               43, 26
               

               Conread position:
               50-367
               

               Cow position:
               chr4:2609948-2610254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               50-390
               

               Cow position:
               chr4:28399698-28399370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               242
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               7, 73
               

               Conread position:
               50-393
               

               Cow position:
               chr4:58261441-58261100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 51
               

               Conread position:
               50-420
               

               Cow position:
               chr4:66112368-66111994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 233
               

               Conread position:
               50-430
               

               Cow position:
               chr4:27540331-27540709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 126
               

               Conread position:
               50-448
               

               Cow position:
               chr4:36730900-36731295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 249
               

               Conread position:
               50-451
               

               Cow position:
               chr4:47351517-47351910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               28, 71
               

               Conread position:
               50-453
               

               Cow position:
               chr4:43866141-43865747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 114
               

               Conread position:
               50-466
               

               Cow position:
               chr4:10055921-10056327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 110
               

               Conread position:
               50-523
               

               Cow position:
               chr4:40414921-40414441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 102
               

               Conread position:
               50-525
               

               Cow position:
               chr4:19584414-19584902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 256
               

               Conread position:
               50-525
               

               Cow position:
               chr4:46383661-46383177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               330
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               29, 87
               

               Conread position:
               50-526
               

               Cow position:
               chr4:25354264-25354717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               331
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               28, 122
               

               Conread position:
               50-527
               

               Cow position:
               chr4:9444979-9444492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               50-527
               

               Cow position:
               chr4:25197787-25197300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 53
               

               Conread position:
               50-527
               

               Cow position:
               chr4:53134321-53134787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 116
               

               Conread position:
               50-532
               

               Cow position:
               chr4:10992489-10992024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 15
               

               Conread position:
               50-532
               

               Cow position:
               chr4:27997394-27997871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 99
               

               Conread position:
               50-532
               

               Cow position:
               chr4:31136466-31136950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 9
               

               Conread position:
               50-532
               

               Cow position:
               chr4:51727793-51728269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 80
               

               Conread position:
               50-538
               

               Cow position:
               chr4:12030549-12031050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               326
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               28, 84
               

               Conread position:
               50-548
               

               Cow position:
               chr4:19313715-19314194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 53
               

               Conread position:
               50-548
               

               Cow position:
               chr4:34208638-34209144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 227
               

               Conread position:
               50-549
               

               Cow position:
               chr4:58248117-58248618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 54
               

               Conread position:
               50-551
               

               Cow position:
               chr4:62317148-62317660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 235
               

               Conread position:
               51-216
               

               Cow position:
               chr4:10993833-10993677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               51-218
               

               Cow position:
               chr4:17585307-17585143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               27, 116
               

               Conread position:
               51-220
               

               Cow position:
               chr4:36489984-36489813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               51-224
               

               Cow position:
               chr4:16859053-16858879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               27, 52
               

               Conread position:
               51-256
               

               Cow position:
               chr4:56409893-56410104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 53
               

               Conread position:
               51-260
               

               Cow position:
               chr4:69406079-69406291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               51-264
               

               Cow position:
               chr4:54468585-54468368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               51-265
               

               Cow position:
               chr4:35930140-35930357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               27, 135
               

               Conread position:
               51-268
               

               Cow position:
               chr4:3990911-3990695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               51-368
               

               Cow position:
               chr4:2422293-2422601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 138
               

               Conread position:
               51-370
               

               Cow position:
               chr4:24119200-24118880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 124
               

               Conread position:
               51-413
               

               Cow position:
               chr4:28377938-28377596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               27, 52
               

               Conread position:
               51-418
               

               Cow position:
               chr4:22741681-22741341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               256
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               25, 65
               

               Conread position:
               51-441
               

               Cow position:
               chr4:23494640-23495018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               20, 56
               

               Conread position:
               51-449
               

               Cow position:
               chr4:63459504-63459117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 52
               

               Conread position:
               51-461
               

               Cow position:
               chr4:39128242-39128655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 122
               

               Conread position:
               51-514
               

               Cow position:
               chr4:1060551-1060102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 100
               

               Conread position:
               51-516
               

               Cow position:
               chr4:17124580-17124130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 100
               

               Conread position:
               51-519
               

               Cow position:
               chr4:11187166-11187634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 116
               

               Conread position:
               51-520
               

               Cow position:
               chr4:10731930-10732404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 52
               

               Conread position:
               51-522
               

               Cow position:
               chr4:48152658-48152187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 219
               

               Conread position:
               51-527
               

               Cow position:
               chr4:62471779-62472266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 262
               

               Conread position:
               51-527
               

               Cow position:
               chr4:66381537-66381052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               324
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               27, 235
               

               Conread position:
               51-535
               

               Cow position:
               chr4:21064744-21065223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 58
               

               Conread position:
               51-551
               

               Cow position:
               chr4:34209737-34210248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 122
               

               Conread position:
               52-233
               

               Cow position:
               chr4:24371014-24370832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               27, 174
               

               Conread position:
               52-236
               

               Cow position:
               chr4:54607245-54607064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               25, 34
               

               Conread position:
               52-269
               

               Cow position:
               chr4:40678423-40678645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               52-375
               

               Cow position:
               chr4:53208951-53209269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 51
               

               Conread position:
               52-419
               

               Cow position:
               chr4:23853916-23854256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               268
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               25, 118
               

               Conread position:
               52-449
               

               Cow position:
               chr4:3850265-3850657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 51
               

               Conread position:
               52-455
               

               Cow position:
               chr4:14152786-14153219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 261
               

               Conread position:
               52-527
               

               Cow position:
               chr4:56570515-56570981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 53
               

               Conread position:
               52-537
               

               Cow position:
               chr4:22073598-22073119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 52
               

               Conread position:
               52-546
               

               Cow position:
               chr4:37342829-37343331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 121
               

               Conread position:
               52-550
               

               Cow position:
               chr4:14414631-14414140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 21
               

               Conread position:
               53-246
               

               Cow position:
               chr4:18489677-18489485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               25, 112
               

               Conread position:
               53-264
               

               Cow position:
               chr4:17175880-17176095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               25, 35
               

               Conread position:
               53-264
               

               Cow position:
               chr4:57555679-57555895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               53-265
               

               Cow position:
               chr4:30306916-30306698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               53-274
               

               Cow position:
               chr4:59833653-59833868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               25, 70
               

               Conread position:
               53-346
               

               Cow position:
               chr4:561114-561404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 50
               

               Conread position:
               53-349
               

               Cow position:
               chr4:51408249-51407964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               48, 19
               

               Conread position:
               53-349
               

               Cow position:
               chr4:54501736-54501428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               25, 110
               

               Conread position:
               53-411
               

               Cow position:
               chr4:59333259-59332916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               230, 113
               

               Conread position:
               53-412
               

               Cow position:
               chr4:12914085-12913738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               147, 26
               

               Conread position:
               53-412
               

               Cow position:
               chr4:65406647-65406301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               26, 54
               

               Conread position:
               53-434
               

               Cow position:
               chr4:29312648-29313031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               25, 233
               

               Conread position:
               53-516
               

               Cow position:
               chr4:45775628-45775151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 53
               

               Conread position:
               53-521
               

               Cow position:
               chr4:24198080-24197604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               319
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               29, 49
               

               Conread position:
               53-552
               

               Cow position:
               chr4:9795658-9795163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               349
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               25, 121
               

               Conread position:
               54-262
               

               Cow position:
               chr4:23573255-23573472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               54-394
               

               Cow position:
               chr4:64072638-64072304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               28, 64
               

               Conread position:
               54-416
               

               Cow position:
               chr4:17474151-17474512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 48
               

               Conread position:
               54-451
               

               Cow position:
               chr4:18255578-18255960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               281
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               23, 49
               

               Conread position:
               55-195
               

               Cow position:
               chr4:49992801-49992945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               55-222
               

               Cow position:
               chr4:18099258-18099094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               30, 0
               
UCSC Genome Browser
               Conread position:
               55-261
               

               Cow position:
               chr4:2671553-2671351 (view  custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               23, 48
               
UCSC Genome Browser
               
               
               
Conread position: 55-262

               
               
               
Cow position: chr4:23554966-23555179 (view  custom track)

               
               
               
Alignm length: 215

               
               
               
Alignm identity: 153

               
               
               
Alignm E-value: 2e-27

               
               
               
Alignm gaps (pig, cow): 22, 97
UCSC Genome Browser
               
               
               
Conread position: 55-264

               
               
               
Cow position: chr4:22744041-22744249 (view  custom track)

               
               
               
Alignm length: 212

               
               
               
Alignm identity: 166

               
               
               
Alignm E-value: 4.06377e-44

               
               
               
Alignm gaps (pig, cow): 169, 47

               
               
               Conread position:55-264
               
               
               Cow position:chr4:23561090-23561305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:55-265
               
               
               Cow position:chr4:23570512-23570728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:55-402
               
               
               Cow position:chr4:23563711-23564074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 233

               
               
               Conread position:55-405
               
               
               Cow position:chr4:51003091-51003428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:55-411
               
               
               Cow position:chr4:19007753-19008114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:55-419
               
               
               Cow position:chr4:23567851-23568233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):22, 292

               
               
               Conread position:55-525
               
               
               Cow position:chr4:13668901-13668430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:55-527
               
               
               Cow position:chr4:21531920-21531449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 25

               
               
               Conread position:55-550
               
               
               Cow position:chr4:7430034-7430516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:55-552
               
               
               Cow position:chr4:55271044-55270553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:56-151
               
               
               Cow position:chr4:54111269-54111364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:56-168
               
               
               Cow position:chr4:41186652-41186537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:56-190
               
               
               Cow position:chr4:1462999-1463135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:56-216
               
               
               Cow position:chr4:46708814-46708654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:56-217
               
               
               Cow position:chr4:11917957-11917794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:56-218
               
               
               Cow position:chr4:56852613-56852773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:56-219
               
               
               Cow position:chr4:13877912-13878068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:56-221
               
               
               Cow position:chr4:48591694-48591525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:56-223
               
               
               Cow position:chr4:19421047-19421215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:56-225
               
               
               Cow position:chr4:41469319-41469153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:56-229
               
               
               Cow position:chr4:4981686-4981857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:56-230
               
               
               Cow position:chr4:44449873-44449693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 106

               
               
               Conread position:56-238
               
               
               Cow position:chr4:29035631-29035816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:56-241
               
               
               Cow position:chr4:19256037-19256216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:154
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:56-250
               
               
               Cow position:chr4:49424557-49424742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):162, 13

               
               
               Conread position:56-262
               
               
               Cow position:chr4:27590123-27589915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):162, 101

               
               
               Conread position:56-264
               
               
               Cow position:chr4:11025647-11025434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:56-264
               
               
               Cow position:chr4:42267026-42266828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 113

               
               
               Conread position:56-264
               
               
               Cow position:chr4:63365661-63365452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:56-265
               
               
               Cow position:chr4:5189281-5189083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:56-265
               
               
               Cow position:chr4:45239989-45240197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:56-265
               
               
               Cow position:chr4:48784689-48784902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:56-266
               
               
               Cow position:chr4:21064286-21064079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):161, 115

               
               
               Conread position:56-266
               
               
               Cow position:chr4:46668286-46668493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 107

               
               
               Conread position:56-357
               
               
               Cow position:chr4:11901847-11901547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:56-363
               
               
               Cow position:chr4:27292247-27291932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:56-375
               
               
               Cow position:chr4:11201533-11201852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:56-375
               
               
               Cow position:chr4:11671166-11671484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:56-383
               
               
               Cow position:chr4:32827406-32827076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:56-386
               
               
               Cow position:chr4:60371119-60370783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:56-390
               
               
               Cow position:chr4:19497534-19497219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:56-404
               
               
               Cow position:chr4:16339876-16339543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:56-411
               
               
               Cow position:chr4:26373955-26373606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):10, 196

               
               
               Conread position:56-433
               
               
               Cow position:chr4:21257413-21257034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 195

               
               
               Conread position:56-453
               
               
               Cow position:chr4:9815636-9815238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 247

               
               
               Conread position:56-453
               
               
               Cow position:chr4:45738766-45738365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:56-462
               
               
               Cow position:chr4:18095960-18095554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:56-462
               
               
               Cow position:chr4:36893069-36893478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 214

               
               
               Conread position:56-463
               
               
               Cow position:chr4:11193898-11194305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:56-464
               
               
               Cow position:chr4:16736219-16736638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:56-509
               
               
               Cow position:chr4:19097008-19097463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:56-514
               
               
               Cow position:chr4:45634-46070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:56-516
               
               
               Cow position:chr4:26323455-26323923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:56-522
               
               
               Cow position:chr4:53208017-53208468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:56-522
               
               
               Cow position:chr4:66173081-66172610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:56-523
               
               
               Cow position:chr4:13589807-13590273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:56-524
               
               
               Cow position:chr4:25369832-25370281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 104

               
               
               Conread position:56-527
               
               
               Cow position:chr4:12048961-12049414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:56-527
               
               
               Cow position:chr4:49159060-49158602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 18

               
               
               Conread position:56-537
               
               
               Cow position:chr4:13142811-13142385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:325
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:56-537
               
               
               Cow position:chr4:20327999-20327525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:56-540
               
               
               Cow position:chr4:36840993-36841463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 208

               
               
               Conread position:56-545
               
               
               Cow position:chr4:23599886-23600361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 206

               
               
               Conread position:56-547
               
               
               Cow position:chr4:1014783-1015281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:56-547
               
               
               Cow position:chr4:18974153-18974637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:56-549
               
               
               Cow position:chr4:12033980-12034482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:324
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:56-552
               
               
               Cow position:chr4:7964935-7964431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:57-266
               
               
               Cow position:chr4:19237956-19238163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):20, 116

               
               
               Conread position:57-517
               
               
               Cow position:chr4:13327240-13326772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 228

               
               
               Conread position:58-428
               
               
               Cow position:chr4:16799474-16799101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:59-527
               
               
               Cow position:chr4:54937605-54938070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 147

               
               
               Conread position:60-367
               
               
               Cow position:chr4:55069223-55069530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 216

               
               
               Conread position:60-367
               
               
               Cow position:chr4:63002116-63002424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 216

               
               
               Conread position:60-397
               
               
               Cow position:chr4:11384179-11384517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 223

               
               
               Conread position:60-399
               
               
               Cow position:chr4:20298990-20299330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 153

               
               
               Conread position:60-461
               
               
               Cow position:chr4:41301270-41300880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:60-497
               
               
               Cow position:chr4:7571131-7571570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 102

               
               
               Conread position:60-527
               
               
               Cow position:chr4:7847547-7847097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:60-527
               
               
               Cow position:chr4:68387512-68387978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:60-540
               
               
               Cow position:chr4:49629218-49629689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 100

               
               
               Conread position:62-220
               
               
               Cow position:chr4:45095935-45095778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:63-546
               
               
               Cow position:chr4:10968661-10968190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:64-234
               
               
               Cow position:chr4:42638561-42638392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:64-264
               
               
               Cow position:chr4:29237426-29237234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 59

               
               
               Conread position:64-352
               
               
               Cow position:chr4:58512839-58512552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:64-375
               
               
               Cow position:chr4:21517277-21516971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):164, 21

               
               
               Conread position:64-411
               
               
               Cow position:chr4:33623444-33623781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):179, 107

               
               
               Conread position:64-527
               
               
               Cow position:chr4:4084722-4084266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:65-187
               
               
               Cow position:chr4:22547072-22546955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:65-220
               
               
               Cow position:chr4:46385851-46385696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-220
               
               
               Cow position:chr4:61235040-61234877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:65-222
               
               
               Cow position:chr4:44684433-44684277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 95

               
               
               Conread position:65-229
               
               
               Cow position:chr4:9482491-9482330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:65-232
               
               
               Cow position:chr4:48499573-48499731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:65-233
               
               
               Cow position:chr4:37955414-37955251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:65-238
               
               
               Cow position:chr4:40576191-40576021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:65-266
               
               
               Cow position:chr4:24415010-24415216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 104

               
               
               Conread position:65-312
               
               
               Cow position:chr4:11389809-11389567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):153, 35

               
               
               Conread position:65-349
               
               
               Cow position:chr4:6792169-6792444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):152, 39

               
               
               Conread position:65-352
               
               
               Cow position:chr4:67408268-67408536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):163, 34

               
               
               Conread position:65-373
               
               
               Cow position:chr4:20502381-20502668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):153, 94

               
               
               Conread position:65-402
               
               
               Cow position:chr4:51866721-51867051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:65-411
               
               
               Cow position:chr4:9845649-9845981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):153, 19

               
               
               Conread position:65-414
               
               
               Cow position:chr4:5999467-5999124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 216

               
               
               Conread position:65-432
               
               
               Cow position:chr4:488714-488335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 102

               
               
               Conread position:65-462
               
               
               Cow position:chr4:15462546-15462132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 60

               
               
               Conread position:65-503
               
               
               Cow position:chr4:25889106-25888677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 102

               
               
               Conread position:65-508
               
               
               Cow position:chr4:51122782-51123220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:65-522
               
               
               Cow position:chr4:29805631-29805184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 21

               
               
               Conread position:65-522
               
               
               Cow position:chr4:44665640-44665205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):199, 157

               
               
               Conread position:65-524
               
               
               Cow position:chr4:21073420-21072986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):153, 28

               
               
               Conread position:65-524
               
               
               Cow position:chr4:45235133-45234703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:309
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:65-524
               
               
               Cow position:chr4:68233706-68234150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 37

               
               
               Conread position:65-525
               
               
               Cow position:chr4:56240118-56239676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):380, 108

               
               
               Conread position:65-527
               
               
               Cow position:chr4:19744616-19745060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 48

               
               
               Conread position:65-527
               
               
               Cow position:chr4:20279067-20279494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:308
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:65-527
               
               
               Cow position:chr4:24187894-24187430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:314
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):15, 222

               
               
               Conread position:65-550
               
               
               Cow position:chr4:52748733-52748252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:65-551
               
               
               Cow position:chr4:59785041-59785538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:65-552
               
               
               Cow position:chr4:2121669-2121200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:66-195
               
               
               Cow position:chr4:34044024-34043896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:66-213
               
               
               Cow position:chr4:4300267-4300414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-216
               
               
               Cow position:chr4:5924795-5924650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:66-220
               
               
               Cow position:chr4:5850606-5850449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:66-220
               
               
               Cow position:chr4:11175819-11175971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:66-220
               
               
               Cow position:chr4:59358707-59358556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:66-225
               
               
               Cow position:chr4:58687709-58687550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-228
               
               
               Cow position:chr4:13920372-13920211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):129, 104

               
               
               Conread position:66-230
               
               
               Cow position:chr4:28789394-28789232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:66-264
               
               
               Cow position:chr4:55523102-55523287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:66-264
               
               
               Cow position:chr4:57931639-57931837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):154, 35

               
               
               Conread position:66-265
               
               
               Cow position:chr4:7213859-7213657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:66-265
               
               
               Cow position:chr4:44073042-44072841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:66-319
               
               
               Cow position:chr4:6630565-6630312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 107

               
               
               Conread position:66-356
               
               
               Cow position:chr4:19438186-19438478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 107

               
               
               Conread position:66-363
               
               
               Cow position:chr4:45114878-45114585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):158, 105

               
               
               Conread position:66-379
               
               
               Cow position:chr4:59106083-59105788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):281, 156

               
               
               Conread position:66-402
               
               
               Cow position:chr4:21371128-21371450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):154, 35

               
               
               Conread position:66-409
               
               
               Cow position:chr4:54930688-54930356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):151, 60

               
               
               Conread position:66-412
               
               
               Cow position:chr4:61624862-61624518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):134, 36

               
               
               Conread position:66-413
               
               
               Cow position:chr4:69509025-69509365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:66-419
               
               
               Cow position:chr4:51739975-51739641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):152, 95

               
               
               Conread position:66-431
               
               
               Cow position:chr4:20139791-20139429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 35

               
               
               Conread position:66-433
               
               
               Cow position:chr4:1405268-1405629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):153, 88

               
               
               Conread position:66-440
               
               
               Cow position:chr4:3251808-3251448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 165

               
               
               Conread position:66-448
               
               
               Cow position:chr4:46591390-46591772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 34

               
               
               Conread position:66-462
               
               
               Cow position:chr4:8947132-8947503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 93

               
               
               Conread position:66-462
               
               
               Cow position:chr4:46456319-46455950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:281
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):154, 36

               
               
               Conread position:66-516
               
               
               Cow position:chr4:36755477-36755919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:312
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:66-527
               
               
               Cow position:chr4:3440134-3440583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 105

               
               
               Conread position:66-527
               
               
               Cow position:chr4:15623572-15624027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:319
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:66-527
               
               
               Cow position:chr4:44612731-44613195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 35

               
               
               Conread position:66-542
               
               
               Cow position:chr4:22345289-22344823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:66-542
               
               
               Cow position:chr4:27529839-27530317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 205

               
               
               Conread position:66-550
               
               
               Cow position:chr4:28772339-28771857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 105

               
               
               Conread position:67-225
               
               
               Cow position:chr4:49885575-49885420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:67-233
               
               
               Cow position:chr4:49068168-49068332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:67-423
               
               
               Cow position:chr4:22115333-22115684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:67-442
               
               
               Cow position:chr4:65179402-65179048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 81

               
               
               Conread position:67-548
               
               
               Cow position:chr4:65826126-65825613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 175

               
               
               Conread position:68-218
               
               
               Cow position:chr4:61969908-61969758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-219
               
               
               Cow position:chr4:19114022-19114173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 60

               
               
               Conread position:68-220
               
               
               Cow position:chr4:48098779-48098624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:68-261
               
               
               Cow position:chr4:27504700-27504895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:68-265
               
               
               Cow position:chr4:13141483-13141283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:68-312
               
               
               Cow position:chr4:53763389-53763152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:68-356
               
               
               Cow position:chr4:52632241-52631951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:68-433
               
               
               Cow position:chr4:33395960-33395608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:68-528
               
               
               Cow position:chr4:44496112-44496553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 104

               
               
               Conread position:68-532
               
               
               Cow position:chr4:2141476-2141904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 33

               
               
               Conread position:68-552
               
               
               Cow position:chr4:41867174-41867663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 103

               
               
               Conread position:69-188
               
               
               Cow position:chr4:60030672-60030793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:69-213
               
               
               Cow position:chr4:10041769-10041908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:69-217
               
               
               Cow position:chr4:14131247-14131387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:69-229
               
               
               Cow position:chr4:67042694-67042852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:69-265
               
               
               Cow position:chr4:22354670-22354863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:69-376
               
               
               Cow position:chr4:63119500-63119206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):149, 92

               
               
               Conread position:69-413
               
               
               Cow position:chr4:68795575-68795224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:69-441
               
               
               Cow position:chr4:47348563-47348924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 59

               
               
               Conread position:69-455
               
               
               Cow position:chr4:51783911-51784292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:69-516
               
               
               Cow position:chr4:46550115-46550568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 176

               
               
               Conread position:69-520
               
               
               Cow position:chr4:31004672-31004229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 8

               
               
               Conread position:69-523
               
               
               Cow position:chr4:23509318-23509777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:69-527
               
               
               Cow position:chr4:203419-202953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 218

               
               
               Conread position:69-532
               
               
               Cow position:chr4:52225740-52226180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 174

               
               
               Conread position:69-551
               
               
               Cow position:chr4:12560772-12561231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 8

               
               
               Conread position:70-227
               
               
               Cow position:chr4:19577793-19577951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:70-262
               
               
               Cow position:chr4:43495634-43495823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):148, 31

               
               
               Conread position:70-265
               
               
               Cow position:chr4:51014850-51015032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:70-412
               
               
               Cow position:chr4:12697380-12697706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):148, 31

               
               
               Conread position:70-458
               
               
               Cow position:chr4:33030293-33030662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):159, 35

               
               
               Conread position:70-546
               
               
               Cow position:chr4:1985381-1985857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:71-219
               
               
               Cow position:chr4:13818698-13818549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:71-222
               
               
               Cow position:chr4:61066386-61066529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:71-544
               
               
               Cow position:chr4:3283716-3283247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 123

               
               
               Conread position:72-234
               
               
               Cow position:chr4:61954290-61954452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):156, 117

               
               
               Conread position:72-362
               
               
               Cow position:chr4:9912465-9912749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:72-368
               
               
               Cow position:chr4:17660471-17660162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:73-218
               
               
               Cow position:chr4:66127594-66127448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:73-347
               
               
               Cow position:chr4:18577042-18576766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:74-265
               
               
               Cow position:chr4:26541467-26541665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:74-384
               
               
               Cow position:chr4:35940275-35939966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 27

               
               
               Conread position:75-394
               
               
               Cow position:chr4:123464-123159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:76-234
               
               
               Cow position:chr4:42103834-42103987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:76-527
               
               
               Cow position:chr4:8801242-8801679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:77-225
               
               
               Cow position:chr4:34180852-34180705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:77-229
               
               
               Cow position:chr4:455033-455184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):81, 97

               
               
               Conread position:77-232
               
               
               Cow position:chr4:61399686-61399541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):141, 24

               
               
               Conread position:77-256
               
               
               Cow position:chr4:10471962-10472139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):147, 97

               
               
               Conread position:77-264
               
               
               Cow position:chr4:1237377-1237192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):141, 38

               
               
               Conread position:77-264
               
               
               Cow position:chr4:54667952-54667764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):141, 111

               
               
               Conread position:77-265
               
               
               Cow position:chr4:27561135-27561322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):144, 94

               
               
               Conread position:77-265
               
               
               Cow position:chr4:46083157-46082966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):32, 161

               
               
               Conread position:77-265
               
               
               Cow position:chr4:62411613-62411804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 25

               
               
               Conread position:77-265
               
               
               Cow position:chr4:62570554-62570743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):68, 87

               
               
               Conread position:77-266
               
               
               Cow position:chr4:19542535-19542722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):141, 93

               
               
               Conread position:77-335
               
               
               Cow position:chr4:26746223-26746475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):140, 94

               
               
               Conread position:77-359
               
               
               Cow position:chr4:37470290-37470568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):237, 60

               
               
               Conread position:77-411
               
               
               Cow position:chr4:36396385-36396062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):164, 25

               
               
               Conread position:77-412
               
               
               Cow position:chr4:33612624-33612290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 207

               
               
               Conread position:77-412
               
               
               Cow position:chr4:54146736-54146399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):147, 94

               
               
               Conread position:77-414
               
               
               Cow position:chr4:26307761-26307418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):149, 76

               
               
               Conread position:77-433
               
               
               Cow position:chr4:36813111-36813467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):116, 94

               
               
               Conread position:77-434
               
               
               Cow position:chr4:47289809-47290172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):141, 217

               
               
               Conread position:77-454
               
               
               Cow position:chr4:48235378-48235737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):157, 150

               
               
               Conread position:77-456
               
               
               Cow position:chr4:63096336-63095961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 59

               
               
               Conread position:77-519
               
               
               Cow position:chr4:63349736-63349293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:321
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:77-524
               
               
               Cow position:chr4:31172405-31172841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 269

               
               
               Conread position:77-524
               
               
               Cow position:chr4:40823376-40822943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:303
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):141, 94

               
               
               Conread position:77-525
               
               
               Cow position:chr4:46597122-46597542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 25

               
               
               Conread position:77-526
               
               
               Cow position:chr4:21365153-21365573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:304
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):141, 24

               
               
               Conread position:77-526
               
               
               Cow position:chr4:23445312-23444849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 24

               
               
               Conread position:77-526
               
               
               Cow position:chr4:43909491-43909954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 75

               
               
               Conread position:77-527
               
               
               Cow position:chr4:961924-961475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 55

               
               
               Conread position:77-527
               
               
               Cow position:chr4:31348455-31348010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 340

               
               
               Conread position:77-527
               
               
               Cow position:chr4:34310716-34310275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 212

               
               
               Conread position:77-527
               
               
               Cow position:chr4:34630641-34631097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 24

               
               
               Conread position:77-527
               
               
               Cow position:chr4:43895064-43894619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 12

               
               
               Conread position:77-532
               
               
               Cow position:chr4:34641990-34641528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 93

               
               
               Conread position:77-535
               
               
               Cow position:chr4:66548014-66547565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 67

               
               
               Conread position:77-537
               
               
               Cow position:chr4:37691569-37691111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 82

               
               
               Conread position:77-540
               
               
               Cow position:chr4:35869954-35870388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:312
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):223, 88

               
               
               Conread position:77-543
               
               
               Cow position:chr4:3340690-3341161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 96

               
               
               Conread position:77-544
               
               
               Cow position:chr4:35981728-35982205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 342

               
               
               Conread position:77-545
               
               
               Cow position:chr4:8769849-8770300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:317
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):146, 25

               
               
               Conread position:77-547
               
               
               Cow position:chr4:46060685-46061156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 75

               
               
               Conread position:77-551
               
               
               Cow position:chr4:4321267-4320779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 233

               
               
               Conread position:77-552
               
               
               Cow position:chr4:19316258-19315791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 25

               
               
               Conread position:77-552
               
               
               Cow position:chr4:19699838-19700307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 206

               
               
               Conread position:77-552
               
               
               Cow position:chr4:23526436-23526912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 106

               
               
               Conread position:78-207
               
               
               Cow position:chr4:18755925-18756050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:78-225
               
               
               Cow position:chr4:36073605-36073749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:78-234
               
               
               Cow position:chr4:41898996-41899153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:78-243
               
               
               Cow position:chr4:52177400-52177235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):156, 144

               
               
               Conread position:78-346
               
               
               Cow position:chr4:3475370-3475633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:78-358
               
               
               Cow position:chr4:22849970-22849701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):140, 75

               
               
               Conread position:78-419
               
               
               Cow position:chr4:13435482-13435813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):100, 142

               
               
               Conread position:78-532
               
               
               Cow position:chr4:62983813-62983363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 28

               
               
               Conread position:78-548
               
               
               Cow position:chr4:6208211-6208652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:314
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):190, 25

               
               
               Conread position:78-551
               
               
               Cow position:chr4:14505260-14504834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 81

               
               
               Conread position:79-219
               
               
               Cow position:chr4:51630398-51630538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-220
               
               
               Cow position:chr4:40396254-40396394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:79-264
               
               
               Cow position:chr4:2536574-2536755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):145, 31

               
               
               Conread position:79-450
               
               
               Cow position:chr4:18439832-18439463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):139, 110

               
               
               Conread position:79-450
               
               
               Cow position:chr4:55395509-55395868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 85

               
               
               Conread position:79-490
               
               
               Cow position:chr4:395691-396075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):142, 51

               
               
               Conread position:79-516
               
               
               Cow position:chr4:5797708-5798125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:79-527
               
               
               Cow position:chr4:23847310-23846864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 110

               
               
               Conread position:79-539
               
               
               Cow position:chr4:22249702-22249267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):111, 23

               
               
               Conread position:80-225
               
               
               Cow position:chr4:9821898-9822042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:80-227
               
               
               Cow position:chr4:65464074-65463935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:80-266
               
               
               Cow position:chr4:12260040-12259855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:80-377
               
               
               Cow position:chr4:38181423-38181715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:80-449
               
               
               Cow position:chr4:10378840-10379217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:80-523
               
               
               Cow position:chr4:27664747-27665203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 206

               
               
               Conread position:80-546
               
               
               Cow position:chr4:6149188-6148720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):242, 93

               
               
               Conread position:81-252
               
               
               Cow position:chr4:20926416-20926246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):144, 63

               
               
               Conread position:81-356
               
               
               Cow position:chr4:33357674-33357949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 60

               
               
               Conread position:81-411
               
               
               Cow position:chr4:50203490-50203821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):137, 194

               
               
               Conread position:81-433
               
               
               Cow position:chr4:59008626-59008265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 20

               
               
               Conread position:81-440
               
               
               Cow position:chr4:25983970-25984317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 94

               
               
               Conread position:81-462
               
               
               Cow position:chr4:45367479-45367858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 21

               
               
               Conread position:81-527
               
               
               Cow position:chr4:45583385-45582932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 208

               
               
               Conread position:82-443
               
               
               Cow position:chr4:42922102-42921760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 79

               
               
               Conread position:82-489
               
               
               Cow position:chr4:63965247-63964839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:82-493
               
               
               Cow position:chr4:62921113-62920720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 72

               
               
               Conread position:83-257
               
               
               Cow position:chr4:40410375-40410204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):141, 73

               
               
               Conread position:84-250
               
               
               Cow position:chr4:22259671-22259516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:84-250
               
               
               Cow position:chr4:41292234-41292066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:140
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:84-397
               
               
               Cow position:chr4:26549209-26549536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 77

               
               
               Conread position:84-462
               
               
               Cow position:chr4:49089540-49089905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 112

               
               
               Conread position:84-491
               
               
               Cow position:chr4:20157667-20157270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:84-532
               
               
               Cow position:chr4:12676559-12676990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 17

               
               
               Conread position:84-551
               
               
               Cow position:chr4:19708687-19709157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 89

               
               
               Conread position:85-229
               
               
               Cow position:chr4:43762788-43762931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 69

               
               
               Conread position:87-264
               
               
               Cow position:chr4:53447917-53447744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:88-211
               
               
               Cow position:chr4:59118396-59118273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:88-265
               
               
               Cow position:chr4:59565290-59565465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):137, 50

               
               
               Conread position:88-335
               
               
               Cow position:chr4:5630003-5629759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):136, 76

               
               
               Conread position:88-412
               
               
               Cow position:chr4:58433461-58433151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):127, 84

               
               
               Conread position:88-456
               
               
               Cow position:chr4:7808328-7808686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 147

               
               
               Conread position:89-361
               
               
               Cow position:chr4:44025067-44024801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:89-451
               
               
               Cow position:chr4:19322328-19321970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:89-524
               
               
               Cow position:chr4:3837030-3837455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 142

               
               
               Conread position:89-548
               
               
               Cow position:chr4:65842011-65841580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:310
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:90-264
               
               
               Cow position:chr4:46370562-46370739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:91-217
               
               
               Cow position:chr4:52177404-52177527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:91-256
               
               
               Cow position:chr4:11563193-11563357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):134, 68

               
               
               Conread position:91-411
               
               
               Cow position:chr4:13043023-13043331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 65

               
               
               Conread position:91-455
               
               
               Cow position:chr4:13406458-13406816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 178

               
               
               Conread position:91-525
               
               
               Cow position:chr4:11897546-11897114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 110

               
               
               Conread position:92-220
               
               
               Cow position:chr4:21250496-21250375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:92-229
               
               
               Cow position:chr4:40434381-40434247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:92-249
               
               
               Cow position:chr4:3268581-3268424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):131, 73

               
               
               Conread position:92-409
               
               
               Cow position:chr4:49813913-49813614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):149, 86

               
               
               Conread position:92-420
               
               
               Cow position:chr4:21233117-21232797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 61

               
               
               Conread position:92-527
               
               
               Cow position:chr4:29291276-29291696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 62

               
               
               Conread position:93-220
               
               
               Cow position:chr4:19430071-19430198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 103

               
               
               Conread position:93-497
               
               
               Cow position:chr4:3820177-3820590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):125, 60

               
               
               Conread position:93-527
               
               
               Cow position:chr4:26659060-26659490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 43

               
               
               Conread position:93-537
               
               
               Cow position:chr4:41602604-41603024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:93-552
               
               
               Cow position:chr4:54455589-54455131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 85

               
               
               Conread position:94-251
               
               
               Cow position:chr4:33062666-33062824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 148

               
               
               Conread position:94-537
               
               
               Cow position:chr4:25226689-25227134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:306
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):82, 188

               
               
               Conread position:94-549
               
               
               Cow position:chr4:34383581-34383127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 58

               
               
               Conread position:95-205
               
               
               Cow position:chr4:27184967-27184860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:95-229
               
               
               Cow position:chr4:9168895-9168761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):124, 89

               
               
               Conread position:95-234
               
               
               Cow position:chr4:45653726-45653584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:95-250
               
               
               Cow position:chr4:39011570-39011414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 97

               
               
               Conread position:95-266
               
               
               Cow position:chr4:16091643-16091473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):129, 93

               
               
               Conread position:95-388
               
               
               Cow position:chr4:28173043-28172762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):124, 57

               
               
               Conread position:95-409
               
               
               Cow position:chr4:14919756-14920055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):122, 61

               
               
               Conread position:95-457
               
               
               Cow position:chr4:37502578-37502927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):124, 68

               
               
               Conread position:95-471
               
               
               Cow position:chr4:14944812-14945188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 197

               
               
               Conread position:95-527
               
               
               Cow position:chr4:657061-656618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 100

               
               
               Conread position:95-527
               
               
               Cow position:chr4:12127886-12127449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 94

               
               
               Conread position:96-428
               
               
               Cow position:chr4:65431903-65432235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:96-462
               
               
               Cow position:chr4:58881209-58880843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 201

               
               
               Conread position:96-532
               
               
               Cow position:chr4:13255853-13256262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:97-214
               
               
               Cow position:chr4:62406912-62407029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:97-462
               
               
               Cow position:chr4:32725981-32726342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 171

               
               
               Conread position:97-520
               
               
               Cow position:chr4:43740280-43740714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:98-551
               
               
               Cow position:chr4:65824165-65824621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):120, 173

               
               
               Conread position:99-220
               
               
               Cow position:chr4:43752938-43753059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:99-262
               
               
               Cow position:chr4:53554056-53554220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 74

               
               
               Conread position:99-453
               
               
               Cow position:chr4:22724884-22725200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:101-264
               
               
               Cow position:chr4:23911826-23911659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:101-264
               
               
               Cow position:chr4:43295929-43295770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):114, 69

               
               
               Conread position:101-535
               
               
               Cow position:chr4:25356543-25356132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 102

               
               
               Conread position:102-386
               
               
               Cow position:chr4:14964544-14964819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:102-413
               
               
               Cow position:chr4:14550614-14550909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:103-238
               
               
               Cow position:chr4:63262411-63262276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 89

               
               
               Conread position:103-381
               
               
               Cow position:chr4:19463255-19463534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 208

               
               
               Conread position:103-410
               
               
               Cow position:chr4:25359376-25359665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):115, 21

               
               
               Conread position:104-343
               
               
               Cow position:chr4:41908026-41907801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):120, 69

               
               
               Conread position:104-453
               
               
               Cow position:chr4:2601995-2602340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:105-449
               
               
               Cow position:chr4:34337503-34337167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 73

               
               
               Conread position:106-265
               
               
               Cow position:chr4:43750044-43749883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:106-362
               
               
               Cow position:chr4:56435573-56435823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 41

               
               
               Conread position:106-457
               
               
               Cow position:chr4:8704752-8705108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):116, 71

               
               
               Conread position:106-481
               
               
               Cow position:chr4:37344665-37344290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):114, 189

               
               
               Conread position:107-264
               
               
               Cow position:chr4:46501123-46501276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 90

               
               
               Conread position:107-527
               
               
               Cow position:chr4:4319382-4318964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:108-524
               
               
               Cow position:chr4:13222406-13221993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):158, 60

               
               
               Conread position:109-527
               
               
               Cow position:chr4:22860935-22860537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):128, 61

               
               
               Conread position:110-267
               
               
               Cow position:chr4:10016830-10016668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:110-547
               
               
               Cow position:chr4:56590802-56591250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 203

               
               
               Conread position:110-552
               
               
               Cow position:chr4:36290379-36290837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 204

               
               
               Conread position:113-527
               
               
               Cow position:chr4:24810672-24810261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:115-359
               
               
               Cow position:chr4:51083585-51083357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):113, 131

               
               
               Conread position:116-350
               
               
               Cow position:chr4:34924915-34924683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):102, 165

               
               
               Conread position:116-357
               
               
               Cow position:chr4:27687701-27687941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):102, 45

               
               
               Conread position:116-411
               
               
               Cow position:chr4:19548774-19549060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):243, 55

               
               
               Conread position:116-412
               
               
               Cow position:chr4:44973420-44973703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):116, 47

               
               
               Conread position:116-462
               
               
               Cow position:chr4:46488058-46487723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:116-527
               
               
               Cow position:chr4:36945414-36945022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:116-547
               
               
               Cow position:chr4:16762954-16762519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 109

               
               
               Conread position:118-546
               
               
               Cow position:chr4:59277700-59277267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 156

               
               
               Conread position:120-255
               
               
               Cow position:chr4:13608023-13608159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:120-532
               
               
               Cow position:chr4:85477-85889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:121-524
               
               
               Cow position:chr4:38935141-38935545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:121-535
               
               
               Cow position:chr4:39767128-39767529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):124, 101

               
               
               Conread position:122-349
               
               
               Cow position:chr4:36724826-36725047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 41

               
               
               Conread position:122-420
               
               
               Cow position:chr4:11331873-11332174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:124-349
               
               
               Cow position:chr4:5623411-5623195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 36

               
               
               Conread position:125-453
               
               
               Cow position:chr4:13974185-13973860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):101, 58

               
               
               Conread position:125-551
               
               
               Cow position:chr4:31506243-31505807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:126-412
               
               
               Cow position:chr4:45952586-45952317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):93, 143

               
               
               Conread position:126-461
               
               
               Cow position:chr4:13941246-13941574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:127-524
               
               
               Cow position:chr4:29384430-29384054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:127-527
               
               
               Cow position:chr4:48321817-48322227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):99, 31

               
               
               Conread position:127-550
               
               
               Cow position:chr4:6413402-6412989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:128-264
               
               
               Cow position:chr4:29842675-29842812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 119

               
               
               Conread position:128-545
               
               
               Cow position:chr4:9681091-9681500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:129-551
               
               
               Cow position:chr4:36929104-36929511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 166

               
               
               Conread position:130-537
               
               
               Cow position:chr4:28839418-28839810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:130-551
               
               
               Cow position:chr4:31859053-31859482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):135, 112

               
               
               Conread position:131-461
               
               
               Cow position:chr4:1354821-1354495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:131-523
               
               
               Cow position:chr4:1026436-1026052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 127

               
               
               Conread position:131-527
               
               
               Cow position:chr4:13284169-13284573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:132-532
               
               
               Cow position:chr4:51768906-51769300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:132-535
               
               
               Cow position:chr4:38944471-38944059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 173

               
               
               Conread position:133-456
               
               
               Cow position:chr4:30791759-30792081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):84, 139

               
               
               Conread position:133-509
               
               
               Cow position:chr4:16593878-16594248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:136-452
               
               
               Cow position:chr4:20842718-20843026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):92, 164

               
               
               Conread position:136-527
               
               
               Cow position:chr4:61389276-61388878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:136-532
               
               
               Cow position:chr4:13344339-13344731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:136-547
               
               
               Cow position:chr4:29106697-29107119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):83, 181

               
               
               Conread position:138-532
               
               
               Cow position:chr4:27344871-27344488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):276, 18

               
               
               Conread position:139-549
               
               
               Cow position:chr4:68805828-68806215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:140-463
               
               
               Cow position:chr4:43515524-43515836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 155

               
               
               Conread position:140-527
               
               
               Cow position:chr4:54111545-54111913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 158

               
               
               Conread position:140-538
               
               
               Cow position:chr4:19408198-19407790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:141-384
               
               
               Cow position:chr4:3689511-3689745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:146-409
               
               
               Cow position:chr4:44676001-44676259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:148-358
               
               
               Cow position:chr4:42347478-42347264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):78, 125

               
               
               Conread position:154-449
               
               
               Cow position:chr4:61148405-61148721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):65, 248

               
               
               Conread position:154-456
               
               
               Cow position:chr4:65175327-65175032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:156-527
               
               
               Cow position:chr4:22713677-22713305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 124

               
               
               Conread position:159-411
               
               
               Cow position:chr4:4843431-4843176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 111

               
               
               Conread position:159-534
               
               
               Cow position:chr4:45077252-45076881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):63, 27

               
               
               Conread position:159-535
               
               
               Cow position:chr4:33097159-33096772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 121

               
               
               Conread position:160-415
               
               
               Cow position:chr4:46552503-46552265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):5, 138

               
               
               Conread position:160-453
               
               
               Cow position:chr4:17084519-17084230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:160-526
               
               
               Cow position:chr4:17186535-17186159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 146

               
               
               Conread position:160-527
               
               
               Cow position:chr4:50769946-50769595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:162-524
               
               
               Cow position:chr4:3421447-3421811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:163-411
               
               
               Cow position:chr4:64118-63873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:163-525
               
               
               Cow position:chr4:34022766-34022398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 118

               
               
               Conread position:163-532
               
               
               Cow position:chr4:32459041-32458661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:165-552
               
               
               Cow position:chr4:34369629-34369250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 9

               
               
               Conread position:166-527
               
               
               Cow position:chr4:47262353-47262727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:167-550
               
               
               Cow position:chr4:52823579-52823188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:168-516
               
               
               Cow position:chr4:54479078-54478735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 82

               
               
               Conread position:168-532
               
               
               Cow position:chr4:37732663-37732284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:169-551
               
               
               Cow position:chr4:11610708-11611079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:170-462
               
               
               Cow position:chr4:59377742-59378028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:173-526
               
               
               Cow position:chr4:16881532-16881184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:174-451
               
               
               Cow position:chr4:69543010-69543290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 113

               
               
               Conread position:174-525
               
               
               Cow position:chr4:27632285-27632629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:174-537
               
               
               Cow position:chr4:20147017-20147385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:174-549
               
               
               Cow position:chr4:2885712-2885331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:175-551
               
               
               Cow position:chr4:17774521-17774153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 130

               
               
               Conread position:176-527
               
               
               Cow position:chr4:9925801-9925449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 110

               
               
               Conread position:176-550
               
               
               Cow position:chr4:34076790-34077159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:177-527
               
               
               Cow position:chr4:41371105-41370751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:177-537
               
               
               Cow position:chr4:19501249-19500888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 65

               
               
               Conread position:177-551
               
               
               Cow position:chr4:45685303-45685664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):85, 73

               
               
               Conread position:178-552
               
               
               Cow position:chr4:33100981-33100590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:179-548
               
               
               Cow position:chr4:15439416-15439798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:182-525
               
               
               Cow position:chr4:64192351-64191992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:182-525
               
               
               Cow position:chr4:68569813-68569456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 116

               
               
               Conread position:183-416
               
               
               Cow position:chr4:9570890-9571128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 158

               
               
               Conread position:183-550
               
               
               Cow position:chr4:45249817-45250185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:184-526
               
               
               Cow position:chr4:48104731-48104376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:186-446
               
               
               Cow position:chr4:53346170-53346434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:189-498
               
               
               Cow position:chr4:44449659-44449360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:190-456
               
               
               Cow position:chr4:61313360-61313100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:190-546
               
               
               Cow position:chr4:19118854-19119228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:192-388
               
               
               Cow position:chr4:47047743-47047939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:192-545
               
               
               Cow position:chr4:18756283-18756645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:193-451
               
               
               Cow position:chr4:54524479-54524237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:193-526
               
               
               Cow position:chr4:48409415-48409096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:196-456
               
               
               Cow position:chr4:36577776-36577514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:196-514
               
               
               Cow position:chr4:54171476-54171802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:196-524
               
               
               Cow position:chr4:52087789-52088095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:196-524
               
               
               Cow position:chr4:54927586-54927243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:196-550
               
               
               Cow position:chr4:20027247-20026894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:197-516
               
               
               Cow position:chr4:4826980-4827312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):29, 99

               
               
               Conread position:197-544
               
               
               Cow position:chr4:37313025-37313374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:199-456
               
               
               Cow position:chr4:48396937-48396685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:203-524
               
               
               Cow position:chr4:54872166-54871836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:204-505
               
               
               Cow position:chr4:25537407-25537718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:204-524
               
               
               Cow position:chr4:21874036-21874365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:206-412
               
               
               Cow position:chr4:13771525-13771332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:208-527
               
               
               Cow position:chr4:68889691-68889389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:209-463
               
               
               Cow position:chr4:24481797-24481552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:209-527
               
               
               Cow position:chr4:5913482-5913174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:211-524
               
               
               Cow position:chr4:52832149-52831828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:212-537
               
               
               Cow position:chr4:52779724-52780045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):206, 81

               
               
               Conread position:213-462
               
               
               Cow position:chr4:65265440-65265187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 84

               
               
               Conread position:214-527
               
               
               Cow position:chr4:1419094-1419414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:215-441
               
               
               Cow position:chr4:39609606-39609815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):10, 54

               
               
               Conread position:217-444
               
               
               Cow position:chr4:46183287-46183514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):120, 75

               
               
               Conread position:217-519
               
               
               Cow position:chr4:14500377-14500065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:217-522
               
               
               Cow position:chr4:55508363-55508076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:217-527
               
               
               Cow position:chr4:7043946-7043627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 103

               
               
               Conread position:217-547
               
               
               Cow position:chr4:45837750-45837419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:220-551
               
               
               Cow position:chr4:45636044-45636370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:221-549
               
               
               Cow position:chr4:16513639-16513316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):149, 71

               
               
               Conread position:224-410
               
               
               Cow position:chr4:67466606-67466789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:225-462
               
               
               Cow position:chr4:11380169-11380398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:225-523
               
               
               Cow position:chr4:213904-214196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):219, 44

               
               
               Conread position:225-524
               
               
               Cow position:chr4:34700153-34699857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 132

               
               
               Conread position:225-524
               
               
               Cow position:chr4:46494181-46494488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):141, 75

               
               
               Conread position:225-527
               
               
               Cow position:chr4:38157206-38156903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:225-551
               
               
               Cow position:chr4:38946093-38946429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):99, 70

               
               
               Conread position:225-552
               
               
               Cow position:chr4:59873316-59873640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:227-461
               
               
               Cow position:chr4:12901667-12901440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:227-552
               
               
               Cow position:chr4:13026189-13026509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):267, 118

               
               
               Conread position:232-523
               
               
               Cow position:chr4:61066666-61066939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):79, 67

               
               
               Conread position:232-535
               
               
               Cow position:chr4:2774609-2774921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):147, 61

               
               
               Conread position:233-527
               
               
               Cow position:chr4:46136644-46136939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):220, 60

               
               
               Conread position:238-552
               
               
               Cow position:chr4:69455727-69455410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:245-550
               
               
               Cow position:chr4:32693689-32694003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:247-524
               
               
               Cow position:chr4:19102978-19102689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):77, 87

               
               
               Conread position:249-498
               
               
               Cow position:chr4:34562293-34562542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):78, 6

               
               
               Conread position:249-546
               
               
               Cow position:chr4:38822409-38822112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):201, 70

               
               
               Conread position:278-552
               
               
               Cow position:chr4:69290801-69290524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 19

               
               
               Conread position:280-416
               
               
               Cow position:chr4:19493492-19493628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:280-449
               
               
               Cow position:chr4:66136665-66136502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:280-456
               
               
               Cow position:chr4:19323912-19324087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:280-456
               
               
               Cow position:chr4:39984334-39984519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):24, 107

               
               
               Conread position:280-459
               
               
               Cow position:chr4:20505142-20504970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):175, 57

               
               
               Conread position:280-511
               
               
               Cow position:chr4:48422815-48423042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 25

               
               
               Conread position:280-527
               
               
               Cow position:chr4:17851313-17851071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 13

               
               
               Conread position:280-527
               
               
               Cow position:chr4:28701294-28701535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:280-527
               
               
               Cow position:chr4:36517546-36517309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:280-535
               
               
               Cow position:chr4:34509778-34510027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:280-537
               
               
               Cow position:chr4:46566534-46566272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 225

               
               
               Conread position:280-539
               
               
               Cow position:chr4:10851510-10851262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:281-456
               
               
               Cow position:chr4:34503233-34503409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:281-462
               
               
               Cow position:chr4:65131514-65131335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:147
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:282-443
               
               
               Cow position:chr4:9092-8934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:282-453
               
               
               Cow position:chr4:61188928-61188760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:282-455
               
               
               Cow position:chr4:54541699-54541526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:282-456
               
               
               Cow position:chr4:49800635-49800803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:282-462
               
               
               Cow position:chr4:19098407-19098591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:282-462
               
               
               Cow position:chr4:54921146-54920973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):151, 24

               
               
               Conread position:282-532
               
               
               Cow position:chr4:47038708-47038966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:282-535
               
               
               Cow position:chr4:19430302-19430557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 228

               
               
               Conread position:282-535
               
               
               Cow position:chr4:20142025-20141789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):243, 13

               
               
               Conread position:282-544
               
               
               Cow position:chr4:26333259-26332993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:282-544
               
               
               Cow position:chr4:26335426-26335160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:283-450
               
               
               Cow position:chr4:61235262-61235100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:283-517
               
               
               Cow position:chr4:23880717-23880491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:283-523
               
               
               Cow position:chr4:66380400-66380150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:283-532
               
               
               Cow position:chr4:60719043-60719287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 17

               
               
               Conread position:284-455
               
               
               Cow position:chr4:49826194-49826364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):161, 21

               
               
               Conread position:284-527
               
               
               Cow position:chr4:68456975-68456726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):151, 10

               
               
               Conread position:285-532
               
               
               Cow position:chr4:12441840-12442104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):166, 21

               
               
               Conread position:285-532
               
               
               Cow position:chr4:13241570-13241834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):166, 21

               
               
               Conread position:285-544
               
               
               Cow position:chr4:38700215-38699968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:286-526
               
               
               Cow position:chr4:8182695-8182445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:286-532
               
               
               Cow position:chr4:46435268-46435529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):168, 16

               
               
               Conread position:288-527
               
               
               Cow position:chr4:60363294-60363541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:289-527
               
               
               Cow position:chr4:65173049-65173292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 13

               
               
               Conread position:289-534
               
               
               Cow position:chr4:21161047-21161302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:289-543
               
               
               Cow position:chr4:38210029-38209768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:290-527
               
               
               Cow position:chr4:19431748-19431500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):156, 19

               
               
               Conread position:290-547
               
               
               Cow position:chr4:19199339-19199075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):165, 7

               
               
               Conread position:290-548
               
               
               Cow position:chr4:20142957-20142702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):181, 16

               
               
               Conread position:291-515
               
               
               Cow position:chr4:60506228-60506454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):160, 26

               
               
               Conread position:293-552
               
               
               Cow position:chr4:42232073-42231818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:294-440
               
               
               Cow position:chr4:42176525-42176377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:294-532
               
               
               Cow position:chr4:44903247-44903479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):150, 6

               
               
               Conread position:294-546
               
               
               Cow position:chr4:19573235-19573495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):145, 243

               
               
               Conread position:294-549
               
               
               Cow position:chr4:19292672-19292922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):141, 126

               
               
               Conread position:295-531
               
               
               Cow position:chr4:386439-386198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):160, 14

               
               
               Conread position:295-548
               
               
               Cow position:chr4:47305029-47305288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):143, 135

               
               
               Conread position:296-438
               
               
               Cow position:chr4:61478560-61478700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:296-456
               
               
               Cow position:chr4:36744533-36744691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:296-524
               
               
               Cow position:chr4:62370269-62370496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):160, 134

               
               
               Conread position:296-551
               
               
               Cow position:chr4:22546885-22546629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):157, 8

               
               
               Conread position:297-527
               
               
               Cow position:chr4:16221923-16221681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 214

               
               
               Conread position:297-532
               
               
               Cow position:chr4:10558488-10558731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 211

               
               
               Conread position:297-537
               
               
               Cow position:chr4:63472121-63471887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:298-462
               
               
               Cow position:chr4:65753295-65753129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:298-527
               
               
               Cow position:chr4:617423-617187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):144, 39

               
               
               Conread position:299-527
               
               
               Cow position:chr4:68590733-68590959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 55

               
               
               Conread position:302-459
               
               
               Cow position:chr4:22196253-22196100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:302-549
               
               
               Cow position:chr4:45724827-45725075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):81, 101

               
               
               Conread position:304-443
               
               
               Cow position:chr4:26012358-26012500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:304-456
               
               
               Cow position:chr4:19256657-19256806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:304-456
               
               
               Cow position:chr4:51920505-51920657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:304-504
               
               
               Cow position:chr4:3268401-3268203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):156, 5

               
               
               Conread position:304-519
               
               
               Cow position:chr4:69317399-69317610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:304-524
               
               
               Cow position:chr4:11969417-11969641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):140, 71

               
               
               Conread position:304-532
               
               
               Cow position:chr4:46050039-46049822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):221, 49

               
               
               Conread position:304-536
               
               
               Cow position:chr4:26830664-26830898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:305-479
               
               
               Cow position:chr4:59625639-59625811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):96, 142

               
               
               Conread position:305-527
               
               
               Cow position:chr4:10962606-10962394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):99, 70

               
               
               Conread position:305-540
               
               
               Cow position:chr4:60527141-60527384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 187

               
               
               Conread position:305-552
               
               
               Cow position:chr4:7698227-7698477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:306-452
               
               
               Cow position:chr4:5964028-5963881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 6

               
               
               Conread position:306-452
               
               
               Cow position:chr4:56336630-56336774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:306-462
               
               
               Cow position:chr4:12135964-12135808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:306-462
               
               
               Cow position:chr4:47280092-47280246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:306-535
               
               
               Cow position:chr4:45588474-45588235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:306-535
               
               
               Cow position:chr4:59002176-59001940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 73

               
               
               Conread position:306-551
               
               
               Cow position:chr4:31177789-31178035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):155, 24

               
               
               Conread position:308-461
               
               
               Cow position:chr4:10472154-10472309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 130

               
               
               Conread position:308-523
               
               
               Cow position:chr4:44184152-44183934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 169

               
               
               Conread position:308-535
               
               
               Cow position:chr4:19333351-19333582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):150, 202

               
               
               Conread position:308-545
               
               
               Cow position:chr4:17051322-17051075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):57, 128

               
               
               Conread position:309-454
               
               
               Cow position:chr4:48381347-48381489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:309-518
               
               
               Cow position:chr4:34653903-34653694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:309-524
               
               
               Cow position:chr4:14020466-14020686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):145, 52

               
               
               Conread position:309-526
               
               
               Cow position:chr4:38350234-38350005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 74

               
               
               Conread position:309-527
               
               
               Cow position:chr4:5727810-5728021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 115

               
               
               Conread position:309-527
               
               
               Cow position:chr4:19578356-19578573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:183
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 41

               
               
               Conread position:309-527
               
               
               Cow position:chr4:26960003-26959776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:309-527
               
               
               Cow position:chr4:33181510-33181734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):147, 191

               
               
               Conread position:309-527
               
               
               Cow position:chr4:47037268-47037485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 66

               
               
               Conread position:309-527
               
               
               Cow position:chr4:65463534-65463323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):146, 10

               
               
               Conread position:309-535
               
               
               Cow position:chr4:69169612-69169847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):144, 10

               
               
               Conread position:309-546
               
               
               Cow position:chr4:60141551-60141320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):154, 42

               
               
               Conread position:309-551
               
               
               Cow position:chr4:32561795-32562042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):144, 134

               
               
               Conread position:309-551
               
               
               Cow position:chr4:44773077-44772828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):144, 222

               
               
               Conread position:309-551
               
               
               Cow position:chr4:45626661-45626431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):149, 105

               
               
               Conread position:309-552
               
               
               Cow position:chr4:44854324-44854072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 25

               
               
               Conread position:310-432
               
               
               Cow position:chr4:13990988-13990870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:310-527
               
               
               Cow position:chr4:60303048-60302825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 158

               
               
               Conread position:310-535
               
               
               Cow position:chr4:23655941-23656171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):143, 12

               
               
               Conread position:310-537
               
               
               Cow position:chr4:15236603-15236823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:310-550
               
               
               Cow position:chr4:18951940-18952189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):134, 239

               
               
               Conread position:311-449
               
               
               Cow position:chr4:60443074-60442937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:311-529
               
               
               Cow position:chr4:17987770-17988000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 116

               
               
               Conread position:311-532
               
               
               Cow position:chr4:58018312-58018537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:311-545
               
               
               Cow position:chr4:46404936-46404703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:312-524
               
               
               Cow position:chr4:12047841-12048065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 194

               
               
               Conread position:312-532
               
               
               Cow position:chr4:67393059-67393290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:312-547
               
               
               Cow position:chr4:35638935-35638696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):13, 204

               
               
               Conread position:312-552
               
               
               Cow position:chr4:5577242-5576998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:313-456
               
               
               Cow position:chr4:11496677-11496538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:313-532
               
               
               Cow position:chr4:54391048-54390819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 116

               
               
               Conread position:315-520
               
               
               Cow position:chr4:34983525-34983321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:318-527
               
               
               Cow position:chr4:61969755-61969540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 185

               
               
               Conread position:318-543
               
               
               Cow position:chr4:49212765-49212542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):133, 54

               
               
               Conread position:318-550
               
               
               Cow position:chr4:4295561-4295790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):135, 112

               
               
               Conread position:319-466
               
               
               Cow position:chr4:61345995-61346139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:319-527
               
               
               Cow position:chr4:18099086-18098871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:321-461
               
               
               Cow position:chr4:58305927-58305789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:321-512
               
               
               Cow position:chr4:26901305-26901497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 149

               
               
               Conread position:321-527
               
               
               Cow position:chr4:4150032-4150229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:321-527
               
               
               Cow position:chr4:14131415-14131614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):134, 42

               
               
               Conread position:321-527
               
               
               Cow position:chr4:21506978-21506774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 123

               
               
               Conread position:321-537
               
               
               Cow position:chr4:6094088-6093865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:321-544
               
               
               Cow position:chr4:19089872-19090092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:321-545
               
               
               Cow position:chr4:19539259-19539026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):132, 202

               
               
               Conread position:321-549
               
               
               Cow position:chr4:33838822-33838589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 54

               
               
               Conread position:321-550
               
               
               Cow position:chr4:45213212-45212976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:321-551
               
               
               Cow position:chr4:47748393-47748627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):129, 59

               
               
               Conread position:321-552
               
               
               Cow position:chr4:56745969-56746207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):121, 27

               
               
               Conread position:322-527
               
               
               Cow position:chr4:69305606-69305825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:323-523
               
               
               Cow position:chr4:13918961-13919165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):133, 43

               
               
               Conread position:323-526
               
               
               Cow position:chr4:27699012-27699229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:323-527
               
               
               Cow position:chr4:20124988-20124778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:323-527
               
               
               Cow position:chr4:43916268-43916483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:323-527
               
               
               Cow position:chr4:50687881-50687675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):81, 117

               
               
               Conread position:323-527
               
               
               Cow position:chr4:61391246-61391045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:323-549
               
               
               Cow position:chr4:46560160-46560390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):102, 80

               
               
               Conread position:323-550
               
               
               Cow position:chr4:45706023-45706250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):148, 38

               
               
               Conread position:323-552
               
               
               Cow position:chr4:40995711-40995946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):132, 48

               
               
               Conread position:324-452
               
               
               Cow position:chr4:50676189-50676064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:324-462
               
               
               Cow position:chr4:32272993-32272854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:324-552
               
               
               Cow position:chr4:61608984-61608751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 181

               
               
               Conread position:325-525
               
               
               Cow position:chr4:29247219-29247012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):114, 104

               
               
               Conread position:327-513
               
               
               Cow position:chr4:53819702-53819508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:327-515
               
               
               Cow position:chr4:61268175-61268367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:328-542
               
               
               Cow position:chr4:29318091-29317863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):112, 189

               
               
               Conread position:328-543
               
               
               Cow position:chr4:19496479-19496707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:329-524
               
               
               Cow position:chr4:69497101-69497300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 106

               
               
               Conread position:329-526
               
               
               Cow position:chr4:41907596-41907393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:330-520
               
               
               Cow position:chr4:13995374-13995571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):116, 45

               
               
               Conread position:330-546
               
               
               Cow position:chr4:8083812-8083599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:331-552
               
               
               Cow position:chr4:39007495-39007710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 44

               
               
               Conread position:333-552
               
               
               Cow position:chr4:3299807-3299584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:334-455
               
               
               Cow position:chr4:32353457-32353336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:334-540
               
               
               Cow position:chr4:32790012-32789812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):191, 53

               
               
               Conread position:336-462
               
               
               Cow position:chr4:54650492-54650365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:336-537
               
               
               Cow position:chr4:561625-561831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):115, 36

               
               
               Conread position:336-552
               
               
               Cow position:chr4:33360099-33360308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:338-453
               
               
               Cow position:chr4:2593843-2593954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:338-527
               
               
               Cow position:chr4:62794368-62794166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:338-548
               
               
               Cow position:chr4:12052331-12052124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:339-455
               
               
               Cow position:chr4:18576538-18576423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:339-490
               
               
               Cow position:chr4:13141098-13140949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:340-524
               
               
               Cow position:chr4:11506786-11506602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):106, 93

               
               
               Conread position:340-524
               
               
               Cow position:chr4:32601834-32602013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:340-526
               
               
               Cow position:chr4:25724-25541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 43

               
               
               Conread position:340-537
               
               
               Cow position:chr4:37991589-37991789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):111, 35

               
               
               Conread position:340-547
               
               
               Cow position:chr4:30769032-30769239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):120, 61

               
               
               Conread position:341-519
               
               
               Cow position:chr4:27511542-27511730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):110, 88

               
               
               Conread position:341-522
               
               
               Cow position:chr4:48137946-48138130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):110, 20

               
               
               Conread position:341-537
               
               
               Cow position:chr4:9269889-9269698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:341-537
               
               
               Cow position:chr4:56395510-56395718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:341-549
               
               
               Cow position:chr4:56410343-56410557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):110, 79

               
               
               Conread position:341-549
               
               
               Cow position:chr4:59015590-59015792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:341-550
               
               
               Cow position:chr4:17790294-17790082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 152

               
               
               Conread position:341-552
               
               
               Cow position:chr4:53347972-53347764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 35

               
               
               Conread position:341-552
               
               
               Cow position:chr4:54881079-54880856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 88

               
               
               Conread position:342-528
               
               
               Cow position:chr4:61887635-61887832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:344-483
               
               
               Cow position:chr4:51708066-51708204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):127, 110

               
               
               Conread position:344-526
               
               
               Cow position:chr4:42374155-42373966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:344-546
               
               
               Cow position:chr4:12867106-12867308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:344-547
               
               
               Cow position:chr4:12245213-12245419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:344-552
               
               
               Cow position:chr4:23059855-23059636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:345-505
               
               
               Cow position:chr4:53380689-53380859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:345-519
               
               
               Cow position:chr4:19122874-19123052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 156

               
               
               Conread position:345-524
               
               
               Cow position:chr4:29842828-29843006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:345-527
               
               
               Cow position:chr4:51083336-51083150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):113, 90

               
               
               Conread position:345-547
               
               
               Cow position:chr4:45840399-45840602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:345-547
               
               
               Cow position:chr4:54785925-54785720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):113, 8

               
               
               Conread position:346-490
               
               
               Cow position:chr4:56805181-56805325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:347-524
               
               
               Cow position:chr4:42080698-42080518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):108, 162

               
               
               Conread position:347-527
               
               
               Cow position:chr4:20164689-20164507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):94, 60

               
               
               Conread position:347-548
               
               
               Cow position:chr4:348421-348224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 157

               
               
               Conread position:347-550
               
               
               Cow position:chr4:61999198-61998987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):32, 192

               
               
               Conread position:347-552
               
               
               Cow position:chr4:46656133-46656348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):106, 193

               
               
               Conread position:349-456
               
               
               Cow position:chr4:21533090-21532984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:349-527
               
               
               Cow position:chr4:13508235-13508049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:349-533
               
               
               Cow position:chr4:30691010-30691198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:349-546
               
               
               Cow position:chr4:13193969-13194164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):9, 150

               
               
               Conread position:349-548
               
               
               Cow position:chr4:25802696-25802903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):106, 190

               
               
               Conread position:350-527
               
               
               Cow position:chr4:22071665-22071482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):73, 69

               
               
               Conread position:350-527
               
               
               Cow position:chr4:47048124-47048304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):102, 153

               
               
               Conread position:350-540
               
               
               Cow position:chr4:39864446-39864625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):177, 95

               
               
               Conread position:351-527
               
               
               Cow position:chr4:5624-5789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:351-547
               
               
               Cow position:chr4:3519429-3519629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:351-548
               
               
               Cow position:chr4:27656985-27657180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:351-552
               
               
               Cow position:chr4:21275593-21275400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:352-535
               
               
               Cow position:chr4:61286552-61286735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:352-545
               
               
               Cow position:chr4:49094281-49094095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):182, 60

               
               
               Conread position:353-513
               
               
               Cow position:chr4:39091898-39092060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:353-524
               
               
               Cow position:chr4:21554074-21553902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:353-545
               
               
               Cow position:chr4:55694186-55694377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:354-524
               
               
               Cow position:chr4:28854261-28854089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:354-527
               
               
               Cow position:chr4:479781-479612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):104, 141

               
               
               Conread position:354-527
               
               
               Cow position:chr4:63261481-63261663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:354-549
               
               
               Cow position:chr4:21479220-21479041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:354-550
               
               
               Cow position:chr4:5250198-5250402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):99, 185

               
               
               Conread position:355-489
               
               
               Cow position:chr4:5047134-5047000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:355-526
               
               
               Cow position:chr4:35291032-35291212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 74

               
               
               Conread position:356-526
               
               
               Cow position:chr4:66168320-66168149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:356-527
               
               
               Cow position:chr4:60955340-60955511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 75

               
               
               Conread position:356-548
               
               
               Cow position:chr4:19542949-19543154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:356-552
               
               
               Cow position:chr4:36876845-36876643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):97, 46

               
               
               Conread position:357-544
               
               
               Cow position:chr4:22215497-22215306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:357-546
               
               
               Cow position:chr4:16239154-16238959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:358-471
               
               
               Cow position:chr4:66892044-66891933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:359-456
               
               
               Cow position:chr4:19580740-19580643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 77

               
               
               Conread position:359-532
               
               
               Cow position:chr4:10786125-10785945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:361-532
               
               
               Cow position:chr4:14063266-14063101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:361-532
               
               
               Cow position:chr4:19200130-19200301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 61

               
               
               Conread position:361-540
               
               
               Cow position:chr4:28660533-28660344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 179

               
               
               Conread position:361-544
               
               
               Cow position:chr4:42608756-42608947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:361-550
               
               
               Cow position:chr4:8352547-8352351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 176

               
               
               Conread position:362-527
               
               
               Cow position:chr4:51617980-51617806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:363-524
               
               
               Cow position:chr4:22331144-22331307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):99, 139

               
               
               Conread position:363-545
               
               
               Cow position:chr4:65291836-65291655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):131, 69

               
               
               Conread position:364-549
               
               
               Cow position:chr4:34919249-34919061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:365-462
               
               
               Cow position:chr4:48321500-48321405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:365-519
               
               
               Cow position:chr4:44681230-44681078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:365-535
               
               
               Cow position:chr4:21112550-21112377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:365-548
               
               
               Cow position:chr4:40392837-40393022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):13, 18

               
               
               Conread position:365-552
               
               
               Cow position:chr4:43579391-43579201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 144

               
               
               Conread position:366-524
               
               
               Cow position:chr4:48693621-48693782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:366-525
               
               
               Cow position:chr4:66122344-66122181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:366-527
               
               
               Cow position:chr4:61524455-61524620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:366-552
               
               
               Cow position:chr4:22849468-22849287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:367-549
               
               
               Cow position:chr4:25929240-25929417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:368-524
               
               
               Cow position:chr4:38940918-38940755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 63

               
               
               Conread position:368-547
               
               
               Cow position:chr4:23943620-23943430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:368-548
               
               
               Cow position:chr4:21128160-21128332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 52

               
               
               Conread position:369-527
               
               
               Cow position:chr4:2537303-2537459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:369-532
               
               
               Cow position:chr4:299175-299345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:371-524
               
               
               Cow position:chr4:51026377-51026538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:371-527
               
               
               Cow position:chr4:23271310-23271474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:371-527
               
               
               Cow position:chr4:59105655-59105495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:371-548
               
               
               Cow position:chr4:30943982-30944165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:372-520
               
               
               Cow position:chr4:36070731-36070885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:372-525
               
               
               Cow position:chr4:39569232-39569385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:133
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:372-527
               
               
               Cow position:chr4:20153520-20153364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 57

               
               
               Conread position:372-527
               
               
               Cow position:chr4:59608156-59608006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:372-536
               
               
               Cow position:chr4:36545248-36545078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:372-548
               
               
               Cow position:chr4:68776964-68777150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 60

               
               
               Conread position:372-549
               
               
               Cow position:chr4:12713998-12713821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:372-549
               
               
               Cow position:chr4:12716867-12716692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 127

               
               
               Conread position:373-544
               
               
               Cow position:chr4:66412216-66412391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:373-549
               
               
               Cow position:chr4:2770103-2770283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):87, 160

               
               
               Conread position:375-526
               
               
               Cow position:chr4:30250239-30250094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:375-551
               
               
               Cow position:chr4:12748381-12748210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:379-527
               
               
               Cow position:chr4:12908409-12908559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:379-527
               
               
               Cow position:chr4:27425747-27425899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):79, 137

               
               
               Conread position:379-532
               
               
               Cow position:chr4:66509673-66509821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:380-524
               
               
               Cow position:chr4:63293496-63293645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:380-527
               
               
               Cow position:chr4:8675406-8675557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:382-524
               
               
               Cow position:chr4:59755605-59755464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:382-549
               
               
               Cow position:chr4:62821017-62820844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:383-537
               
               
               Cow position:chr4:12920372-12920534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:385-526
               
               
               Cow position:chr4:14964870-14965004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:385-551
               
               
               Cow position:chr4:19503970-19504134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:385-552
               
               
               Cow position:chr4:19496944-19496766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 157

               
               
               Conread position:389-527
               
               
               Cow position:chr4:35939688-35939552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:391-527
               
               
               Cow position:chr4:49880647-49880515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:392-527
               
               
               Cow position:chr4:68358379-68358516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 87

               
               
               Conread position:399-549
               
               
               Cow position:chr4:34544362-34544516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 78

               
               
               Conread position:401-549
               
               
               Cow position:chr4:63183624-63183471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:402-527
               
               
               Cow position:chr4:29206591-29206715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:402-547
               
               
               Cow position:chr4:19328643-19328793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:406-516
               
               
               Cow position:chr4:16797110-16796995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:406-525
               
               
               Cow position:chr4:49338104-49338227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:409-527
               
               
               Cow position:chr4:61193274-61193154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:414-532
               
               
               Cow position:chr4:6202333-6202208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:417-550
               
               
               Cow position:chr4:22701736-22701602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:418-551
               
               
               Cow position:chr4:45386896-45387034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:452-552
               
               
               Cow position:chr4:57550857-57550958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 0
Show alignments to all cow chromosomes.
Conread position:	7-264
Cow position:	chr4:41598983-41599247 (view UCSC Genome Browser custom track)
Alignm length:	265
Alignm identity:	180
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	71, 0
Conread position:	7-527
Cow position:	chr4:30779168-30778629 (view UCSC Genome Browser custom track)
Alignm length:	545
Alignm identity:	370
Alignm E-value:	0
Alignm gaps (pig, cow):	71, 269
Conread position:	12-265
Cow position:	chr4:26908791-26908534 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	169
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	56, 21
Conread position:	12-266
Cow position:	chr4:5610397-5610145 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	203
Alignm E-value:	0
Alignm gaps (pig, cow):	20, 27
Conread position:	12-373
Cow position:	chr4:24458427-24458073 (view UCSC Genome Browser custom track)
Alignm length:	368
Alignm identity:	266
Alignm E-value:	0
Alignm gaps (pig, cow):	66, 93
Conread position:	12-454
Cow position:	chr4:41441237-41441676 (view UCSC Genome Browser custom track)
Alignm length:	451
Alignm identity:	317
Alignm E-value:	0
Alignm gaps (pig, cow):	66, 181
Conread position:	13-229
Cow position:	chr4:53701212-53701419 (view UCSC Genome Browser custom track)
Alignm length:	220
Alignm identity:	155
Alignm E-value:	4e-22
Alignm gaps (pig, cow):	66, 93
Conread position:	13-546
Cow position:	chr4:21258896-21259414 (view UCSC Genome Browser custom track)
Alignm length:	540
Alignm identity:	343
Alignm E-value:	2e-38
Alignm gaps (pig, cow):	10, 51
Conread position:	17-218
Cow position:	chr4:28094771-28094579 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	143
Alignm E-value:	4e-22
Alignm gaps (pig, cow):	6, 108
Conread position:	21-217
Cow position:	chr4:19742287-19742096 (view UCSC Genome Browser custom track)
Alignm length:	197
Alignm identity:	138
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	44, 0
Conread position:	25-234
Cow position:	chr4:18522145-18521939 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	153
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	33, 41
Conread position:	25-256
Cow position:	chr4:48182399-48182635 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	162
Alignm E-value:	6e-26
Alignm gaps (pig, cow):	10, 108
Conread position:	25-543
Cow position:	chr4:10034587-10035107 (view UCSC Genome Browser custom track)
Alignm length:	538
Alignm identity:	338
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	28, 167
Conread position:	25-552
Cow position:	chr4:4085452-4084896 (view UCSC Genome Browser custom track)
Alignm length:	566
Alignm identity:	427
Alignm E-value:	0
Alignm gaps (pig, cow):	35, 120
Conread position:	26-264
Cow position:	chr4:10026174-10026405 (view UCSC Genome Browser custom track)
Alignm length:	243
Alignm identity:	170
Alignm E-value:	7e-28
Alignm gaps (pig, cow):	52, 147
Conread position:	26-462
Cow position:	chr4:17052908-17052474 (view UCSC Genome Browser custom track)
Alignm length:	446
Alignm identity:	303
Alignm E-value:	0
Alignm gaps (pig, cow):	200, 25
Conread position:	27-269
Cow position:	chr4:15848024-15848269 (view UCSC Genome Browser custom track)
Alignm length:	248
Alignm identity:	168
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	51, 11
Conread position:	27-350
Cow position:	chr4:54974998-54975303 (view UCSC Genome Browser custom track)
Alignm length:	328
Alignm identity:	224
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	15, 36
Conread position:	27-424
Cow position:	chr4:620461-620054 (view UCSC Genome Browser custom track)
Alignm length:	416
Alignm identity:	305
Alignm E-value:	0
Alignm gaps (pig, cow):	52, 25
Conread position:	29-167
Cow position:	chr4:48212792-48212647 (view UCSC Genome Browser custom track)
Alignm length:	146
Alignm identity:	115
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	27, 0