Cow genome map

Conread name: Ss1.1-rfbs3939b_n22.5

Conread position: 4-301
Cow position: chr14:447718-448015 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 186
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 95, 104

Conread position: 7-301
Cow position: chr14:25876870-25877165 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 195
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 7, 0

Conread position: 10-289
Cow position: chr14:3156116-3156396 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 185
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 16, 87

Conread position: 10-310
Cow position: chr14:3080544-3080242 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 193
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 19-301
Cow position: chr14:3155957-3156240 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 179
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 19-301
Cow position: chr14:25876715-25876997 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 176
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 19-301
Cow position: chr14:25876967-25877249 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 21-299
Cow position: chr14:3155470-3155749 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 180
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 5, 68

Conread position: 21-301
Cow position: chr14:3080029-3079748 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 176
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 21-301
Cow position: chr14:3155554-3155835 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 180
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 5, 76

Conread position: 21-301
Cow position: chr14:25783825-25784106 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 174
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 22-300
Cow position: chr14:3101189-3100914 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 179
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 253, 125

Conread position: 25-250
Cow position: chr14:3127704-3127480 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 61, 73

Conread position: 25-250
Cow position: chr14:25783914-25784138 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 149
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 53, 67

Conread position: 25-251
Cow position: chr14:25877561-25877787 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 151
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-258
Cow position: chr14:3101270-3101038 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 155
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 69

Conread position: 25-291
Cow position: chr14:3156216-3156482 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 171
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-291
Cow position: chr14:25794864-25794598 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 156, 147

Conread position: 25-291
Cow position: chr14:25836869-25837135 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 172
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 25-298
Cow position: chr14:25860510-25860783 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 175
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 213, 208

Conread position: 25-301
Cow position: chr14:3127620-3127344 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 182
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 250, 239

Conread position: 25-301
Cow position: chr14:3127956-3127680 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 175
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25783410-25783686 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 181
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 72, 61

Conread position: 25-301
Cow position: chr14:25783494-25783770 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 179
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25783578-25783854 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 176
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25783662-25783938 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 175
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 224, 242

Conread position: 25-301
Cow position: chr14:25784334-25784610 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 180
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25795116-25794840 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 176
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25795452-25795176 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 170
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25836113-25836389 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25836365-25836641 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 176
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25836449-25836725 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25836617-25836893 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 181
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25859334-25859610 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 180
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25859838-25860114 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 145, 151

Conread position: 25-301
Cow position: chr14:25859922-25860198 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 178
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 132, 145

Conread position: 25-301
Cow position: chr14:25860342-25860618 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 179
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25876637-25876913 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25877141-25877417 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25877393-25877669 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 182
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 53, 62

Conread position: 25-301
Cow position: chr14:25895852-25896128 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 175
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25910897-25911173 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr14:25910981-25911257 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 178
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 25-309
Cow position: chr14:25784082-25784367 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 276, 0

Conread position: 25-309
Cow position: chr14:25784250-25784535 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 276, 0

Conread position: 25-309
Cow position: chr14:25794780-25794495 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 182
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 72, 64

Conread position: 25-309
Cow position: chr14:25795032-25794747 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 177
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 276, 0

Conread position: 26-310
Cow position: chr14:3155881-3156166 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 187
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 277, 0

Conread position: 27-251
Cow position: chr14:25859756-25859980 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 27-251
Cow position: chr14:25876807-25877031 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 27-291
Cow position: chr14:447573-447837 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 239, 243

Conread position: 27-299
Cow position: chr14:3061673-3061401 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 171
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 248, 237

Conread position: 27-301
Cow position: chr14:680963-681237 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 181
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 54, 63

Conread position: 27-301
Cow position: chr14:3080442-3080168 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 183
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 248, 242

Conread position: 27-310
Cow position: chr14:3101351-3101068 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 185
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 92, 19

Conread position: 27-310
Cow position: chr14:3127870-3127586 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 188
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 276, 0

Conread position: 29-301
Cow position: chr14:25836285-25836557 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 173
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 29-301
Cow position: chr14:25859674-25859946 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 179
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 29-310
Cow position: chr14:25836537-25836819 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 188
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 272, 0

Conread position: 30-301
Cow position: chr14:3100850-3100579 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 30-301
Cow position: chr14:25860263-25860534 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 173
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 55

Conread position: 30-301
Cow position: chr14:25877314-25877585 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 171
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 243, 222

Conread position: 30-301
Cow position: chr14:25910818-25911089 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 173
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 30-309
Cow position: chr14:3080355-3080075 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 173
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 273, 0

Conread position: 31-290
Cow position: chr14:434134-434393 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 162
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-300
Cow position: chr14:3080102-3079833 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 173
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 31-301
Cow position: chr14:3127782-3127512 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 139, 157

Conread position: 32-301
Cow position: chr14:25860181-25860450 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 172
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 32-301
Cow position: chr14:25877232-25877501 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 171
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 33-251
Cow position: chr14:25836709-25836927 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 33-290
Cow position: chr14:680801-681058 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 164
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 75, 63

Conread position: 33-291
Cow position: chr14:3080268-3080010 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 161
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-301
Cow position: chr14:25794520-25794251 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 174
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 182, 225

Conread position: 33-301
Cow position: chr14:25859174-25859442 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 33-301
Cow position: chr14:25859258-25859526 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 33-301
Cow position: chr14:25895692-25895960 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 169
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 238, 242

Conread position: 33-302
Cow position: chr14:447663-447932 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 173
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 241, 232

Conread position: 34-301
Cow position: chr14:25784175-25784442 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 170
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 36-301
Cow position: chr14:25859513-25859778 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 166
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 36-301
Cow position: chr14:25860437-25860702 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 173
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 44, 62

Conread position: 36-301
Cow position: chr14:25876564-25876829 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 171
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 36-301
Cow position: chr14:25877488-25877753 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 174
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 44, 62

Conread position: 36-330
Cow position: chr14:25836964-25837256 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 197
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 227, 232

Conread position: 40-300
Cow position: chr14:3155406-3155666 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 173
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 44-301
Cow position: chr14:25860109-25860366 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 44-301
Cow position: chr14:25876320-25876577 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 164
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 88, 97

Conread position: 45-300
Cow position: chr14:3080760-3080505 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 164
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.