Cow genome map
| Conread name: | Ss1.1-rfbs3939b_n22.5 |
| Conread position: | 9-249 |
| Cow position: | chr19:14948333-14948092 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 9-301 |
| Cow position: | chr19:14959603-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 10-309 |
| Cow position: | chr19:14940627-14940928 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 10-309 |
| Cow position: | chr19:14960424-14960125 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 255 |
| Conread position: | 18-301 |
| Cow position: | chr19:23614416-23614699 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-291 |
| Cow position: | chr19:23650204-23650475 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 21-301 |
| Cow position: | chr19:14940386-14940667 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 21-301 |
| Cow position: | chr19:23613662-23613943 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 5, 88 |
| Conread position: | 21-301 |
| Cow position: | chr19:23649952-23650233 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 21-301 |
| Cow position: | chr19:23650120-23650401 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 21-301 |
| Cow position: | chr19:43570246-43569965 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 5, 239 |
| Conread position: | 22-301 |
| Cow position: | chr19:23649450-23649729 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-299 |
| Cow position: | chr19:14959097-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-299 |
| Cow position: | chr19:23597432-23597706 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-300 |
| Cow position: | chr19:14960074-14959801 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 260, 0 |
| Conread position: | 25-300 |
| Cow position: | chr19:23614675-23614950 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 151, 145 |
| Conread position: | 25-301 |
| Cow position: | chr19:14940559-14940835 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:14959175-14958905 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:14960324-14960050 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:20635482-20635206 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 149, 153 |
| Conread position: | 25-301 |
| Cow position: | chr19:23597264-23597540 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:23597348-23597624 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:23613415-23613691 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:23613583-23613859 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 155, 165 |
| Conread position: | 25-301 |
| Cow position: | chr19:23613835-23614111 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 81, 72 |
| Conread position: | 25-301 |
| Cow position: | chr19:23613919-23614195 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 75, 61 |
| Conread position: | 25-301 |
| Cow position: | chr19:23614087-23614363 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:23614255-23614531 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:23614339-23614615 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:23614507-23614783 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:23614591-23614867 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 81, 72 |
| Conread position: | 25-301 |
| Cow position: | chr19:23614759-23615035 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:23649789-23650065 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr19:23649873-23650149 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 25-302 |
| Cow position: | chr19:43570157-43569880 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 146, 150 |
| Conread position: | 25-307 |
| Cow position: | chr19:14940223-14940506 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 25-309 |
| Cow position: | chr19:14940307-14940592 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 25-309 |
| Cow position: | chr19:43570073-43569788 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 25-310 |
| Cow position: | chr19:23597096-23597382 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 75 |
| Conread position: | 27-258 |
| Cow position: | chr19:14940813-14941044 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-291 |
| Cow position: | chr19:43569903-43569643 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 27-301 |
| Cow position: | chr19:14948398-14948124 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-301 |
| Cow position: | chr19:23614173-23614447 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 27-301 |
| Cow position: | chr19:23649623-23649897 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-301 |
| Cow position: | chr19:23649707-23649981 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 129, 136 |
| Conread position: | 27-310 |
| Cow position: | chr19:23596849-23597130 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 30-249 |
| Cow position: | chr19:20677771-20677990 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-251 |
| Cow position: | chr19:20678359-20678580 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-298 |
| Cow position: | chr19:14940144-14940412 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-300 |
| Cow position: | chr19:20678527-20678794 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 67, 78 |
| Conread position: | 30-301 |
| Cow position: | chr19:14960153-14959882 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 220, 211 |
| Conread position: | 30-301 |
| Cow position: | chr19:20678275-20678546 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-301 |
| Cow position: | chr19:23614848-23615117 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 30-307 |
| Cow position: | chr19:20677687-20677965 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 49, 78 |
| Conread position: | 30-309 |
| Cow position: | chr19:20677855-20678135 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 139, 146 |
| Conread position: | 30-310 |
| Cow position: | chr19:14940732-14941013 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 31-291 |
| Cow position: | chr19:23649543-23649803 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-301 |
| Cow position: | chr19:23597187-23597456 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-309 |
| Cow position: | chr19:20677605-20677883 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 138, 142 |
| Conread position: | 33-310 |
| Cow position: | chr19:14940483-14940761 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 268, 0 |
| Conread position: | 34-309 |
| Cow position: | chr19:14940064-14940340 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 35-250 |
| Cow position: | chr19:20635640-20635426 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 35-251 |
| Cow position: | chr19:20635304-20635088 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-309 |
| Cow position: | chr19:20678112-20678387 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 224, 218 |
| Conread position: | 35-309 |
| Cow position: | chr19:20678196-20678471 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 35-309 |
| Cow position: | chr19:23613761-23614036 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 228, 218 |
| Conread position: | 36-254 |
| Cow position: | chr19:20678449-20678667 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 36-301 |
| Cow position: | chr19:20635387-20635122 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 142, 136 |
| Conread position: | 36-310 |
| Cow position: | chr19:20635555-20635280 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 265, 0 |
| Conread position: | 38-301 |
| Cow position: | chr19:20635721-20635458 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 39-289 |
| Cow position: | chr19:14948469-14948220 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 111, 69 |
| Conread position: | 44-301 |
| Cow position: | chr19:14959650-14959394 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 44-301 |
| Cow position: | chr19:23613350-23613607 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 206, 197 |
| Conread position: | 44-301 |
| Cow position: | chr19:23649388-23649645 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.