Cow genome map
| Conread name: | Ss1.1-rfbs3939b_n22.5 |
| Conread position: | 1-309 |
| Cow position: | chr2:78754788-78755098 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 7, 236 |
| Conread position: | 21-281 |
| Cow position: | chr2:78755229-78755488 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 157, 108 |
| Conread position: | 21-291 |
| Cow position: | chr2:78755313-78755581 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 221, 24 |
| Conread position: | 21-309 |
| Cow position: | chr2:82800090-82800380 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 5, 145 |
| Conread position: | 22-291 |
| Cow position: | chr2:82800176-82800445 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 25-210 |
| Cow position: | chr2:82800263-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 25-289 |
| Cow position: | chr2:78755065-78755329 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 213, 201 |
| Conread position: | 25-289 |
| Cow position: | chr2:78756070-78756332 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 89, 44 |
| Conread position: | 25-301 |
| Cow position: | chr2:78754897-78755173 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-309 |
| Cow position: | chr2:82799591-82799876 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 69, 62 |
| Conread position: | 26-301 |
| Cow position: | chr2:78754982-78755257 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 152, 144 |
| Conread position: | 26-303 |
| Cow position: | chr2:78755401-78755677 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 241, 117 |
| Conread position: | 27-251 |
| Cow position: | chr2:48689391-48689167 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 73, 69 |
| Conread position: | 27-262 |
| Cow position: | chr2:82799761-82799996 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-282 |
| Cow position: | chr2:78754495-78754746 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 151, 145 |
| Conread position: | 27-301 |
| Cow position: | chr2:48689474-48689201 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 244, 70 |
| Conread position: | 30-219 |
| Cow position: | chr2:78756159-78756346 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 30-251 |
| Cow position: | chr2:86465924-86466145 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 36-245 |
| Cow position: | chr2:86465426-86465635 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 135, 142 |
| Conread position: | 36-301 |
| Cow position: | chr2:78755160-78755424 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 36-301 |
| Cow position: | chr2:78755495-78755757 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 36-301 |
| Cow position: | chr2:78755996-78756262 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 36-310 |
| Cow position: | chr2:82799938-82800213 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 36-310 |
| Cow position: | chr2:82800022-82800297 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 265, 0 |
| Conread position: | 39-224 |
| Cow position: | chr2:78755663-78755848 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 142, 133 |
| Conread position: | 69-301 |
| Cow position: | chr2:82799467-82799699 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 192, 185 |
| Conread position: | 82-300 |
| Cow position: | chr2:82799394-82799614 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.