Cow genome map

Conread name: Ss1.1-rfbs3939b_n22.5

Conread position: 6-301
Cow position: chr22:11640651-11640947 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 188
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 36

Conread position: 8-222
Cow position: chr22:12475501-12475287 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 8-251
Cow position: chr22:14429780-14430021 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 55, 22

Conread position: 9-310
Cow position: chr22:11641074-11641377 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 199
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 17, 258

Conread position: 18-301
Cow position: chr22:14429958-14430239 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 180
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 68, 17

Conread position: 18-301
Cow position: chr22:14430126-14430407 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 183
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 17

Conread position: 21-244
Cow position: chr22:12476415-12476189 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 151
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 21-301
Cow position: chr22:12399364-12399083 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 5, 248

Conread position: 21-307
Cow position: chr22:12399700-12399412 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 191
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 5, 221

Conread position: 21-343
Cow position: chr22:46654578-46654902 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 214
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 158, 151

Conread position: 25-179
Cow position: chr22:12385097-12384943 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 25-218
Cow position: chr22:12457955-12457762 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-221
Cow position: chr22:11641259-11641455 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 66, 74

Conread position: 25-222
Cow position: chr22:12499775-12499972 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 25-245
Cow position: chr22:14430215-14430435 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 61, 84

Conread position: 25-251
Cow position: chr22:11666680-11666906 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 75, 68

Conread position: 25-263
Cow position: chr22:12419315-12419077 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 25-263
Cow position: chr22:12430835-12430597 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 152
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 25-279
Cow position: chr22:12432431-12432177 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 25-289
Cow position: chr22:12430919-12430655 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 177
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 25-291
Cow position: chr22:12458123-12457857 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 61, 75

Conread position: 25-291
Cow position: chr22:12458459-12458193 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 172
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 25-298
Cow position: chr22:12399443-12399170 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 187
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr22:11640923-11641199 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 177
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 82

Conread position: 25-301
Cow position: chr22:12385435-12385157 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 27, 242

Conread position: 25-301
Cow position: chr22:12385603-12385325 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 180
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 133, 150

Conread position: 25-301
Cow position: chr22:12385687-12385411 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 20, 8

Conread position: 25-301
Cow position: chr22:12399191-12398915 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr22:12399779-12399503 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 207, 212

Conread position: 25-301
Cow position: chr22:12418878-12418602 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 176
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr22:12431003-12430727 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 182
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 222, 243

Conread position: 25-301
Cow position: chr22:12431171-12430895 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 223, 243

Conread position: 25-301
Cow position: chr22:12431339-12431063 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 145, 151

Conread position: 25-301
Cow position: chr22:12432263-12431987 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 178
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 236, 242

Conread position: 25-301
Cow position: chr22:12458039-12457763 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 185
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 226, 232

Conread position: 25-301
Cow position: chr22:12458207-12457931 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 181
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 145, 162

Conread position: 25-301
Cow position: chr22:12475568-12475292 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 187
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 75, 71

Conread position: 25-301
Cow position: chr22:12475904-12475628 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 178
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 155, 163

Conread position: 25-301
Cow position: chr22:12498851-12499127 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 176
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 226, 230

Conread position: 25-301
Cow position: chr22:12498935-12499211 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 142, 147

Conread position: 25-301
Cow position: chr22:12499691-12499967 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 25-307
Cow position: chr22:12399527-12399244 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 154, 147

Conread position: 25-309
Cow position: chr22:12431087-12430802 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 274, 0

Conread position: 25-309
Cow position: chr22:12431255-12430970 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 280, 0

Conread position: 25-309
Cow position: chr22:12431759-12431474 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 187
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 278, 0

Conread position: 25-309
Cow position: chr22:12431927-12431642 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 76, 64

Conread position: 25-309
Cow position: chr22:12458627-12458342 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 186
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 280, 0

Conread position: 25-309
Cow position: chr22:12475652-12475367 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 276, 0

Conread position: 25-309
Cow position: chr22:12475820-12475535 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 274, 0

Conread position: 25-309
Cow position: chr22:12476324-12476039 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 142, 148

Conread position: 25-309
Cow position: chr22:12499439-12499724 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 187
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 276, 0

Conread position: 25-309
Cow position: chr22:12499607-12499892 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 276, 0

Conread position: 25-309
Cow position: chr22:46654078-46654363 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 186
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 278, 0

Conread position: 25-309
Cow position: chr22:46654498-46654783 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 183
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 60

Conread position: 25-310
Cow position: chr22:12385265-12384979 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 276, 0

Conread position: 25-310
Cow position: chr22:12399107-12398821 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 55, 65

Conread position: 27-251
Cow position: chr22:11641177-11641401 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 78, 71

Conread position: 27-251
Cow position: chr22:11701420-11701644 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 147
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 149, 160

Conread position: 27-289
Cow position: chr22:12418960-12418698 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 27-291
Cow position: chr22:12499189-12499453 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 178
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 52, 58

Conread position: 27-301
Cow position: chr22:12399609-12399335 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 189
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 141, 151

Conread position: 27-301
Cow position: chr22:12476070-12475796 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 179
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 82, 59

Conread position: 27-301
Cow position: chr22:12476154-12475880 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 167, 149

Conread position: 27-309
Cow position: chr22:11640757-11641040 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 184
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 276, 0

Conread position: 27-309
Cow position: chr22:12431841-12431558 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 241, 235

Conread position: 27-310
Cow position: chr22:12418792-12418508 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 182
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 276, 0

Conread position: 27-310
Cow position: chr22:12499105-12499389 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 226, 241

Conread position: 30-291
Cow position: chr22:12399018-12398757 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 79, 63

Conread position: 30-301
Cow position: chr22:12476235-12475964 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 179
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 48, 58

Conread position: 30-301
Cow position: chr22:12499024-12499295 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 180
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 48, 58

Conread position: 30-301
Cow position: chr22:14468045-14468316 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 140, 144

Conread position: 30-303
Cow position: chr22:12385176-12384903 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 183
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 247, 241

Conread position: 30-309
Cow position: chr22:14429884-14430164 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 78

Conread position: 32-301
Cow position: chr22:46654421-46654690 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 176
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 32-309
Cow position: chr22:46654253-46654531 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 184
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 239, 226

Conread position: 33-301
Cow position: chr22:12399267-12398999 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 144, 154

Conread position: 33-301
Cow position: chr22:12458535-12458267 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 174
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 33-301
Cow position: chr22:12475728-12475460 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 181
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 230, 235

Conread position: 33-301
Cow position: chr22:12499531-12499799 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 179
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 33-309
Cow position: chr22:12458367-12458090 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 182
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 270, 0

Conread position: 34-301
Cow position: chr22:12385340-12385073 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 58, 75

Conread position: 34-301
Cow position: chr22:12475979-12475712 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 180
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 34-301
Cow position: chr22:12499280-12499547 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 176
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 35-310
Cow position: chr22:11666606-11666882 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 185
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 70, 61

Conread position: 36-251
Cow position: chr22:14468219-14468434 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 59

Conread position: 36-301
Cow position: chr22:14430730-14430988 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 174
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 257, 191

Conread position: 36-302
Cow position: chr22:12432168-12431902 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 176
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 134, 140

Conread position: 36-307
Cow position: chr22:12432336-12432064 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 182
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 133, 141

Conread position: 42-301
Cow position: chr22:12432498-12432239 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 167
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 141, 160

Conread position: 66-301
Cow position: chr22:12399822-12399587 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 154
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 105, 110

Show alignments to all cow chromosomes.