Cow genome map

Conread name: Ss1.1-rfbs3939b_n22.5

Conread position: 10-289
Cow position: chr23:24654082-24654362 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 21, 0

Conread position: 18-291
Cow position: chr23:25626757-25627030 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 80, 67

Conread position: 19-301
Cow position: chr23:24522510-24522227 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 183
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 157

Conread position: 21-256
Cow position: chr23:25660463-25660699 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 21-301
Cow position: chr23:24639444-24639725 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 182
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 21-301
Cow position: chr23:25626591-25626872 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 5, 233

Conread position: 21-301
Cow position: chr23:25660211-25660492 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 181
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 25-218
Cow position: chr23:24560321-24560128 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 25-224
Cow position: chr23:24626541-24626738 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 184, 0

Conread position: 25-289
Cow position: chr23:24535728-24535464 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 176
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 252, 246

Conread position: 25-289
Cow position: chr23:25626680-25626944 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 25-290
Cow position: chr23:25626263-25626528 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 167
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 25-291
Cow position: chr23:25698591-25698325 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 65

Conread position: 25-298
Cow position: chr23:24654182-24654455 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 176
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 265, 224

Conread position: 25-300
Cow position: chr23:25626431-25626703 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 185
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 5

Conread position: 25-301
Cow position: chr23:24535812-24535536 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 188
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 235, 243

Conread position: 25-301
Cow position: chr23:24547013-24546737 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr23:24547097-24546821 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr23:24560405-24560129 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr23:24560489-24560213 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 192
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr23:24639281-24639557 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 179
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 100, 108

Conread position: 25-301
Cow position: chr23:25626095-25626371 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 182
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 25-301
Cow position: chr23:25660300-25660576 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 182
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 89, 70

Conread position: 25-309
Cow position: chr23:24522668-24522386 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 96, 64

Conread position: 25-309
Cow position: chr23:24546929-24546647 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 274, 0

Conread position: 25-309
Cow position: chr23:24626373-24626658 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 276, 0

Conread position: 25-309
Cow position: chr23:24639701-24639986 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 194
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 278, 0

Conread position: 25-310
Cow position: chr23:24547265-24546979 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 276, 0

Conread position: 27-222
Cow position: chr23:24639871-24640066 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 27-270
Cow position: chr23:24522417-24522174 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 27-298
Cow position: chr23:24560571-24560300 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 27-301
Cow position: chr23:24560655-24560381 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 27-301
Cow position: chr23:24639787-24640061 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 180
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 27-301
Cow position: chr23:25626013-25626287 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 181
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 27-302
Cow position: chr23:24626459-24626734 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 27-309
Cow position: chr23:24639535-24639818 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 183
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 274, 0

Conread position: 27-310
Cow position: chr23:24639619-24639903 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 194
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 223, 214

Conread position: 30-301
Cow position: chr23:24535975-24535704 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 178
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 93, 109

Conread position: 30-301
Cow position: chr23:25724057-25723786 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 233, 237

Conread position: 30-309
Cow position: chr23:24560820-24560540 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 178
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 272, 0

Conread position: 30-310
Cow position: chr23:25660389-25660670 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 181
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 60

Conread position: 33-301
Cow position: chr23:24535888-24535620 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 174
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 39-251
Cow position: chr23:25660146-25660358 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 39-309
Cow position: chr23:24626303-24626574 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 262, 0

Conread position: 43-290
Cow position: chr23:24522569-24522322 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 218, 204

Conread position: 44-309
Cow position: chr23:24547330-24547064 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 257, 0

Conread position: 48-310
Cow position: chr23:24560718-24560455 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 172
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 255, 0

Conread position: 50-292
Cow position: chr23:24521972-24521729 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 44

Conread position: 54-291
Cow position: chr23:24654043-24654280 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 158
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 80-301
Cow position: chr23:25625982-25626203 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 122-300
Cow position: chr23:24626302-24626480 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.