Cow genome map
| Conread name: | Ss1.1-rfbs3939b_n22.5 |
| Conread position: | 6-301 |
| Cow position: | chr25:23420511-23420807 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 20, 86 |
| Conread position: | 10-309 |
| Cow position: | chr25:33157341-33157040 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 166 |
| Conread position: | 12-301 |
| Cow position: | chr25:33305434-33305147 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 21-300 |
| Cow position: | chr25:33156994-33156715 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 5, 196 |
| Conread position: | 21-302 |
| Cow position: | chr25:33305342-33305066 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 21-310 |
| Cow position: | chr25:34447081-34447372 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 22-244 |
| Cow position: | chr25:36801112-36801334 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-301 |
| Cow position: | chr25:33299044-33299323 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-250 |
| Cow position: | chr25:23420615-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-264 |
| Cow position: | chr25:33299635-33299867 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 25-264 |
| Cow position: | chr25:34447506-34447743 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 25-281 |
| Cow position: | chr25:33305171-33304918 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 127, 60 |
| Conread position: | 25-283 |
| Cow position: | chr25:36800695-36800953 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-289 |
| Cow position: | chr25:34769556-34769292 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-291 |
| Cow position: | chr25:33298711-33298977 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-297 |
| Cow position: | chr25:34447338-34447610 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-299 |
| Cow position: | chr25:33127950-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 145, 153 |
| Conread position: | 25-301 |
| Cow position: | chr25:23420447-23420723 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 159, 145 |
| Conread position: | 25-301 |
| Cow position: | chr25:33127866-33128142 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 217, 198 |
| Conread position: | 25-301 |
| Cow position: | chr25:33299299-33299575 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr25:33305900-33305630 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 144, 66 |
| Conread position: | 25-301 |
| Cow position: | chr25:34447422-34447698 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr25:34769724-34769448 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr25:34769976-34769700 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr25:34770060-34769784 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr25:36801523-36801799 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-302 |
| Cow position: | chr25:36801691-36801968 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-309 |
| Cow position: | chr25:33157493-33157208 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 25-309 |
| Cow position: | chr25:33299131-33299416 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 78 |
| Conread position: | 25-309 |
| Cow position: | chr25:33299467-33299752 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 25-309 |
| Cow position: | chr25:34769892-34769607 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 25-310 |
| Cow position: | chr25:34447254-34447540 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 277, 0 |
| Conread position: | 25-310 |
| Cow position: | chr25:34770144-34769858 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 25-310 |
| Cow position: | chr25:36800527-36800813 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 93 |
| Conread position: | 26-300 |
| Cow position: | chr25:34446920-34447193 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 26-301 |
| Cow position: | chr25:36801356-36801631 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 251, 239 |
| Conread position: | 26-309 |
| Cow position: | chr25:23420364-23420648 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 27-245 |
| Cow position: | chr25:34769470-34769252 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-251 |
| Cow position: | chr25:22235979-22236203 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-291 |
| Cow position: | chr25:346514-346778 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-300 |
| Cow position: | chr25:33298629-33298900 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 72 |
| Conread position: | 27-301 |
| Cow position: | chr25:326989-327263 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 27-301 |
| Cow position: | chr25:22235895-22236169 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 71 |
| Conread position: | 27-301 |
| Cow position: | chr25:33157071-33156797 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-301 |
| Cow position: | chr25:33299217-33299491 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-301 |
| Cow position: | chr25:34769806-34769532 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-303 |
| Cow position: | chr25:33299553-33299829 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-309 |
| Cow position: | chr25:33157155-33156872 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 216, 230 |
| Conread position: | 27-309 |
| Cow position: | chr25:33298881-33299164 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 27-309 |
| Cow position: | chr25:36800949-36801232 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 142, 147 |
| Conread position: | 27-309 |
| Cow position: | chr25:36801609-36801892 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 27-310 |
| Cow position: | chr25:33298797-33299081 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 30-245 |
| Cow position: | chr25:34433005-34433220 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 30-270 |
| Cow position: | chr25:18642102-18641860 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 239 |
| Conread position: | 30-301 |
| Cow position: | chr25:33299388-33299659 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-301 |
| Cow position: | chr25:36800868-36801139 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-309 |
| Cow position: | chr25:33157236-33156956 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 33-299 |
| Cow position: | chr25:33145170-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 33-301 |
| Cow position: | chr25:33127790-33128058 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-301 |
| Cow position: | chr25:33145086-33145354 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 55 |
| Conread position: | 33-309 |
| Cow position: | chr25:33298971-33299248 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 139, 145 |
| Conread position: | 36-289 |
| Cow position: | chr25:326572-326825 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-300 |
| Cow position: | chr25:34447181-34447445 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-307 |
| Cow position: | chr25:34762825-34763092 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 262, 0 |
| Conread position: | 41-309 |
| Cow position: | chr25:33298558-33298828 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 42-205 |
| Cow position: | chr25:366890-367053 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-299 |
| Cow position: | chr25:33144846-33145100 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 173, 166 |
| Conread position: | 42-310 |
| Cow position: | chr25:326494-326763 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 260, 0 |
| Conread position: | 43-251 |
| Cow position: | chr25:414698-414490 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 44-301 |
| Cow position: | chr25:366724-366981 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 45-301 |
| Cow position: | chr25:22235829-22236085 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 45-301 |
| Cow position: | chr25:36800799-36801055 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 124, 134 |
| Conread position: | 46-290 |
| Cow position: | chr25:427330-427574 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 131 |
| Conread position: | 47-309 |
| Cow position: | chr25:36800633-36800896 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 256, 0 |
| Conread position: | 66-309 |
| Cow position: | chr25:33127739-33127983 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 108-301 |
| Cow position: | chr25:34763225-34763418 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.