Cow genome map
| Conread name: | Ss1.1-rfbs3939b_n22.5 |
| Conread position: | 4-301 |
| Cow position: | chr6:49340699-49340996 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 175, 184 |
| Conread position: | 21-301 |
| Cow position: | chr6:49340379-49340660 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 22-301 |
| Cow position: | chr6:49340465-49340744 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 220, 194 |
| Conread position: | 22-309 |
| Cow position: | chr6:49340969-49341257 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 25-224 |
| Cow position: | chr6:49341224-49341423 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-291 |
| Cow position: | chr6:49396441-49396707 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 156, 165 |
| Conread position: | 25-301 |
| Cow position: | chr6:49340636-49340912 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 225, 216 |
| Conread position: | 25-301 |
| Cow position: | chr6:49341056-49341332 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr6:49395943-49396219 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 213, 207 |
| Conread position: | 25-301 |
| Cow position: | chr6:49396357-49396633 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-301 |
| Cow position: | chr6:49396693-49396969 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-307 |
| Cow position: | chr6:49396273-49396556 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 25-309 |
| Cow position: | chr6:49340552-49340837 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 154, 162 |
| Conread position: | 25-309 |
| Cow position: | chr6:49340804-49341089 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 27-310 |
| Cow position: | chr6:49340890-49341174 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 36-301 |
| Cow position: | chr6:49362330-49362595 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-301 |
| Cow position: | chr6:49396122-49396381 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.